2019-05-17 16:45:19 +02:00
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# $FreeBSD$
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2019-05-19 00:41:15 +02:00
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PORTNAME= gemma
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2019-05-17 16:45:19 +02:00
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DISTVERSION= 0.98.1
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Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
2019-07-26 22:46:53 +02:00
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PORTREVISION= 1
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2019-05-17 16:45:19 +02:00
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Genome-wide Efficient Mixed Model Association
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libcblas.so:math/cblas \
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libgsl.so:math/gsl
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USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \
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localbase:ldflags
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USE_GITHUB= yes
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GH_ACCOUNT= genetics-statistics
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2019-05-19 00:41:15 +02:00
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GH_PROJECT= GEMMA
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2019-05-17 16:45:19 +02:00
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MAKEFILE= ${FILESDIR}/Makefile
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CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -DOPENBLAS_LEGACY
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LDFLAGS+= -lopenblas
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OPTIONS_DEFINE= EXAMPLES
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pre-configure:
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@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
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do-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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do-test:
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(cd ${WRKSRC}/test && ${SH} test_suite.sh)
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2019-05-19 00:41:15 +02:00
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.include <bsd.port.mk>
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