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freebsd-ports/biology/py-crossmap/Makefile

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biology/py-crossmap: Lift over genomics coordinates between assemblies CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.
2021-04-13 01:30:30 +02:00
PORTNAME= crossmap
biology/py-crossmap: Update to 0.5.4 Add viewchain command Reported by: portscout
2021-04-21 15:22:37 +02:00
DISTVERSION= 0.5.4
biology/py-crossmap: Lift over genomics coordinates between assemblies CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.
2021-04-13 01:30:30 +02:00
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= CrossMap-${DISTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Lift over genomics coordinates between assemblies
LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
biology/py-crossmap: Fix build with Python 3.8+ * Add missing dependency devel/py-nose that is required to build. With Python 3.6/3.7 there are no build issues because the sdist contains Python Eggs of "nose" for these versions. While I'm here: * Set NO_ARCH because the port has no architecture specific files. * Make it concurrent safe, package installs a script and bump PORTREVISION due package change. PR: 253815 Approved by: portmgr (build fix) MFH: No (The port was added after the 2021Q1 branch)
2021-04-21 09:44:44 +02:00
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0.10.4:devel/py-nose@${PY_FLAVOR}
biology/py-crossmap: Lift over genomics coordinates between assemblies CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.
2021-04-13 01:30:30 +02:00
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}bx-python>0:biology/py-bx-python@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-bigwig@${PY_FLAVOR}
USES= python:3.5+
biology/py-crossmap: Fix build with Python 3.8+ * Add missing dependency devel/py-nose that is required to build. With Python 3.6/3.7 there are no build issues because the sdist contains Python Eggs of "nose" for these versions. While I'm here: * Set NO_ARCH because the port has no architecture specific files. * Make it concurrent safe, package installs a script and bump PORTREVISION due package change. PR: 253815 Approved by: portmgr (build fix) MFH: No (The port was added after the 2021Q1 branch)
2021-04-21 09:44:44 +02:00
USE_PYTHON= autoplist concurrent cython distutils
NO_ARCH= yes
biology/py-crossmap: Lift over genomics coordinates between assemblies CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and gVCF.
2021-04-13 01:30:30 +02:00
.include <bsd.port.mk>
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