freebsd-ports/biology/mrbayes/Makefile

# Created by: mzaki@biol.s.u-tokyo.ac.jp
# $FreeBSD$

PORTNAME=	mrbayes
PORTVERSION=	3.1.2
PORTREVISION=	3
CATEGORIES=	biology
MASTER_SITES=	SF

MAINTAINER=	mzaki@m.u-tokyo.ac.jp
COMMENT=	Bayesian inference of phylogeny

OPTIONS_DEFINE=	EXAMPLES

USES=		gmake readline:port

PLIST_FILES=	bin/mb

PORTEXAMPLES=	adh.nex anolis.nex avian_ovomucoids.nex bglobin.nex \
		cynmix.nex kim.nex primates.nex replicase.nex

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/mb ${STAGEDIR}${PREFIX}/bin/
	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
.for file in ${PORTEXAMPLES}
	${INSTALL_DATA} ${WRKSRC}/${file} ${STAGEDIR}${EXAMPLESDIR}
.endfor

.include <bsd.port.mk>
Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 17:55:44 +02:00			`# Created by: mzaki@biol.s.u-tokyo.ac.jp`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00			`# $FreeBSD$`

			`PORTNAME= mrbayes`
			`PORTVERSION= 3.1.2`
Update devel/readline to 8.0 - Bump PORTREVISION of dependent ports for shlib change Changes: https://tiswww.case.edu/php/chet/readline/CHANGES PR: 236156 Exp-run by: antoine 2019-04-09 16:04:49 +02:00			`PORTREVISION= 3`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00			`CATEGORIES= biology`
			`MASTER_SITES= SF`

- Update maintainer's email address Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer) 2008-05-17 18:52:34 +02:00			`MAINTAINER= mzaki@m.u-tokyo.ac.jp`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00			`COMMENT= Bayesian inference of phylogeny`

Support stage USE_GMAKE -> USES=gmake use USES=readline:port 2013-12-10 18:54:12 +01:00			`OPTIONS_DEFINE= EXAMPLES`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00
Support stage USE_GMAKE -> USES=gmake use USES=readline:port 2013-12-10 18:54:12 +01:00			`USES= gmake readline:port`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00
			`PLIST_FILES= bin/mb`

			`PORTEXAMPLES= adh.nex anolis.nex avian_ovomucoids.nex bglobin.nex \`
			`cynmix.nex kim.nex primates.nex replicase.nex`

			`do-install:`
Fix build on -current by un-clobbering LDFLAGS. Also, don't mute installation commands. 2014-08-15 18:37:37 +02:00			`${INSTALL_PROGRAM} ${WRKSRC}/mb ${STAGEDIR}${PREFIX}/bin/`
Support stage USE_GMAKE -> USES=gmake use USES=readline:port 2013-12-10 18:54:12 +01:00			`@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00			`.for file in ${PORTEXAMPLES}`
Fix build on -current by un-clobbering LDFLAGS. Also, don't mute installation commands. 2014-08-15 18:37:37 +02:00			`${INSTALL_DATA} ${WRKSRC}/${file} ${STAGEDIR}${EXAMPLESDIR}`
MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp 2007-12-15 16:13:41 +01:00			`.endfor`

			`.include <bsd.port.mk>`