2021-08-13 15:34:09 +02:00
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PORTNAME= ont-fast5-api
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DISTVERSIONPREFIX= release_
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2022-03-25 17:37:29 +01:00
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DISTVERSION= 4.0.2
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2021-08-13 15:34:09 +02:00
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CATEGORIES= biology python
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Interface to HDF5 files in Oxford Nanopore .fast5 format
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2022-09-07 23:06:12 +02:00
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WWW= https://pypi.python.org/pypi/ont_fast5_api
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2021-08-13 15:34:09 +02:00
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LICENSE= MPL20
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LICENSE_FILE= ${WRKSRC}/LICENSE.md
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LIB_DEPENDS= libvbz_hdf_plugin.so:archivers/vbz-compression
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RUN_DEPENDS= ${PYNUMPY} \
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${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}progressbar>0:misc/py-progressbar@${PY_FLAVOR}
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TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>=0:devel/py-pip@${PY_FLAVOR}
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USES= python
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2022-03-25 17:37:29 +01:00
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USE_PYTHON= autoplist concurrent distutils
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2021-08-13 15:34:09 +02:00
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USE_GITHUB= yes
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GH_ACCOUNT= nanoporetech
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GH_PROJECT= ont_fast5_api
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NO_ARCH= yes
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NO_BUILD= yes
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post-patch:
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${RM} ${WRKSRC}/ont_fast5_api/vbz_plugin/*
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pre-configure:
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@${REINPLACE_CMD} -e 's|progressbar33|progressbar|g' \
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${WRKSRC}/setup.py \
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${WRKSRC}/README.rst \
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${WRKSRC}/ont_fast5_api/conversion_tools/conversion_utils.py
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do-test:
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@cd ${WRKSRC} && ${PYTHON_CMD} ${PYDISTUTILS_SETUP} test
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.include <bsd.port.mk>
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