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freebsd-ports/biology/mapm3/Makefile

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Add NO_STAGE all over the place in preparation for the staging support (cat: biology)
2013-09-20 17:55:44 +02:00
# Created by: Tassilo Philipp <tphilipp@potion-studios.com>
MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program. MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL). WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ PR: ports/122452 Submitted by: Tassilo Philipp <tphilipp at potion-studios.com>
2008-04-06 06:49:05 +02:00
# $FreeBSD$
PORTNAME= mapm3
PORTVERSION= 3.0
CATEGORIES= biology
MASTER_SITES= http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ \
ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/ \
http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/ \
http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/
DISTNAME= mapm3-source
EXTRACT_SUFX= .tar.Z
MAINTAINER= tphilipp@potion-studios.com
COMMENT= Constructs linkage maps of markers segregating in experimental crosses
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS Also link with libncurses, not libtermcap approved by: infrastructure blanket
2016-02-01 23:09:10 +01:00
USES= ncurses
- Fix build with clang - Stage support PR: ports/185655 Submitted by: Tassilo Philipp <tphilipp@potion-studios.com> (maintainer) Approved by: thierry (mentor)
2014-01-12 20:07:28 +01:00
USE_CSTD= gnu89
CFLAGS+= -Wno-return-type
MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program. MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL). WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ PR: ports/122452 Submitted by: Tassilo Philipp <tphilipp at potion-studios.com>
2008-04-06 06:49:05 +02:00
NO_WRKSUBDIR= yes
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS Also link with libncurses, not libtermcap approved by: infrastructure blanket
2016-02-01 23:09:10 +01:00
MAKE_ARGS+= SYS_LIBS="${LDFLAGS} -lm -lncurses"
- Mark MAKE_JOBS_UNSAFE Reported by: pointyhat
2009-11-20 23:53:09 +01:00
MAKE_JOBS_UNSAFE= yes
MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program. MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL). WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ PR: ports/122452 Submitted by: Tassilo Philipp <tphilipp at potion-studios.com>
2008-04-06 06:49:05 +02:00
post-patch:
${CP} ${WRKSRC}/sun/* ${WRKSRC}
- Fix build with clang - Stage support PR: ports/185655 Submitted by: Tassilo Philipp <tphilipp@potion-studios.com> (maintainer) Approved by: thierry (mentor)
2014-01-12 20:07:28 +01:00
pre-install:
@${REINPLACE_CMD} -e 's|/usr/local|${STAGEDIR}${PREFIX}|' ${WRKSRC}/Makefile
MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program. MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL). WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ PR: ports/122452 Submitted by: Tassilo Philipp <tphilipp at potion-studios.com>
2008-04-06 06:49:05 +02:00
.include <bsd.port.mk>
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