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freebsd-ports/biology/py-dna-features-viewer/Makefile

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biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
2022-02-03 13:37:38 +01:00
PORTNAME= dna-features-viewer
biology/py-dna-features-viewer: Update to 3.1.1 python 3.9 compatibility Changes: https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/tags Reported by: portscout
2022-05-08 14:48:38 +02:00
DISTVERSION= 3.1.1
biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
2022-02-03 13:37:38 +01:00
CATEGORIES= biology python
*/*: rename CHEESESHOP to PYPI in MASTER_SITES PR: 267994 Differential revision: D37518 Approved by: bapt
2023-01-11 16:47:15 +01:00
MASTER_SITES= PYPI
biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
2022-02-03 13:37:38 +01:00
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= dna_features_viewer-${PORTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files
Add WWW entries to port Makefiles It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
2022-09-07 23:06:12 +02:00
WWW= https://pypi.python.org/project/dna-features-viewer/
biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
2022-02-03 13:37:38 +01:00
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENCE.txt
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3:math/py-matplotlib@${PY_FLAVOR} \
biology/py-dna-features-viewer: Add py-bcbio-gff dep Needed to automatically extract features from GFF files
2022-02-03 21:11:38 +01:00
${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} \
biology/py-dna-features-viewer: Add missing dependency py-packaging not mentioned in setup.py, but runtime errors thrown without it.
2022-02-12 16:11:33 +01:00
${PYTHON_PKGNAMEPREFIX}bcbio-gff>0:biology/py-bcbio-gff@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}
biology/py-dna-features-viewer: Python lib to visualize DNA features DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files. DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
2022-02-03 13:37:38 +01:00
USES= python
USE_PYTHON= autoplist distutils
.include <bsd.port.mk>
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