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freebsd-ports/biology/pycogent/Makefile

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- Update to 1.5.3 - Trim Makefile headers
2012-10-08 05:17:02 +02:00
# Created by: Wen Heping <wenheping@gmail.com>
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
# $FreeBSD$
PORTNAME= pycogent
- Update to 1.5.3 - Trim Makefile headers
2012-10-08 05:17:02 +02:00
PORTVERSION= 1.5.3
Update the default version of GCC in the Ports Collection from GCC 4.7.4 to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)
2014-09-10 22:50:31 +02:00
PORTREVISION= 3
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
CATEGORIES= biology python
- Switch SourceForge ports to the new File Release System: categories starting with B,C
2009-08-22 02:15:15 +02:00
MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION}
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
DISTNAME= PyCogent-${PORTVERSION}
EXTRACT_SUFX= .tgz
- Update to 1.4 - Update my mail address to FreeBSD
2009-12-17 07:51:53 +01:00
MAINTAINER= wen@FreeBSD.org
- Stage support [1] - Pet portlint [1] - Add LICENSE - Convert to PYDISTUTILS_AUTOPLIST PR: 188819 [1] Submitted by: Bartek Rutkowski <ports@robakdesign.com> [1]
2014-05-02 16:00:13 +02:00
COMMENT= Toolkit for statistical analysis of biological sequences
LICENSE= GPLv2
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
BUILD_DEPENDS= ${PYNUMPY} \
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c. With hat: portmgr Sponsored by: Absolight
2016-04-01 15:29:15 +02:00
${LOCALBASE}/bin/cython:lang/cython \
${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \
${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:databases/py-sqlalchemy06
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned about for a while. PR: ports/168208 Approved by: portmgr (miwi)
2012-06-10 20:42:48 +02:00
RUN_DEPENDS:= ${BUILD_DEPENDS}
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
- Convert ports from benchmarks/ and biology/ to new USES=python Approved by: portmgr (implicit)
2014-10-19 09:38:11 +02:00
USES= python
USE_PYTHON= distutils autoplist
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
2009-06-22 14:46:56 +02:00
.include <bsd.port.mk>
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