2012-06-04 00:21:27 +02:00
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This is a collection of data structures and algorithms useful for
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building bioinformatics-related tools and utilities. Current list of
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features includes: a Sequence data type supporting protein and
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nucleotide sequences and conversion between them. As of version 0.4,
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different kinds of sequence have different types. Support for quality
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data, reading and writing Fasta formatted files, reading TwoBit and phd
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formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support
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for doing alignments - including dynamic adjustment of scores based on
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sequence quality. Also Blast output parsing. Partly implemented single
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linkage clustering, and multiple alignment. Reading Gene Ontology (GO)
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annotations (GOA) and definitions hierarchy.
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2010-01-03 06:02:13 +01:00
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2012-02-13 06:20:41 +01:00
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WWW: http://biohaskell.org/Libraries/Bio
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