freebsd-ports/biology/jalview/Makefile

# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$

PORTNAME=	jalview
PORTVERSION=	2.07
PORTREVISION=	2
CATEGORIES=	biology java
MASTER_SITES=	http://www.jalview.org/source/
DISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/}

MAINTAINER=	ports@FreeBSD.org
COMMENT=	Viewer and editor for multiple sequence alignments

USE_JAVA=	yes
JAVA_VERSION=	1.6+
USE_ANT=	yes
ALL_TARGET=	makejars
WRKSRC=		${WRKDIR}/${PORTNAME}

DATADIR=	${JAVASHAREDIR}/${PORTNAME}
SUB_FILES=	jalview.sh

do-install:
	${INSTALL_SCRIPT} ${WRKDIR}/jalview.sh ${STAGEDIR}${PREFIX}/bin/jalview
	@${MKDIR} ${STAGEDIR}${DATADIR}
	${INSTALL_DATA} ${WRKSRC}/dist/* ${STAGEDIR}${DATADIR}

.include <bsd.port.mk>
- Reassign to the heap at maintainer's request 2012-10-01 16:45:16 +02:00			`# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>`
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> 2006-02-13 10:42:13 +01:00			`# $FreeBSD$`

			`PORTNAME= jalview`
			`PORTVERSION= 2.07`
Bump portrevision due to upgrade of devel/gettext. The affected ports are the ones with gettext as a run-dependency according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT in Makefile (29 of them). PR: ports/124340 Submitted by: edwin@ Approved by: portmgr (pav) 2008-06-06 15:08:29 +02:00			`PORTREVISION= 2`
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> 2006-02-13 10:42:13 +01:00			`CATEGORIES= biology java`
			`MASTER_SITES= http://www.jalview.org/source/`
			`DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/}`

- Reassign to the heap at maintainer's request 2012-10-01 16:45:16 +02:00			`MAINTAINER= ports@FreeBSD.org`
Support stage 2014-01-21 00:10:10 +01:00			`COMMENT= Viewer and editor for multiple sequence alignments`
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> 2006-02-13 10:42:13 +01:00
			`USE_JAVA= yes`
Decommissioning java 1.5 (EOLed since October 2009): suppress any reference to USE_JAVA= 1.5+ (part1) 2012-12-10 12:25:27 +01:00			`JAVA_VERSION= 1.6+`
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> 2006-02-13 10:42:13 +01:00			`USE_ANT= yes`
			`ALL_TARGET= makejars`
			`WRKSRC= ${WRKDIR}/${PORTNAME}`

			`DATADIR= ${JAVASHAREDIR}/${PORTNAME}`
			`SUB_FILES= jalview.sh`

			`do-install:`
Support stage 2014-01-21 00:10:10 +01:00			`${INSTALL_SCRIPT} ${WRKDIR}/jalview.sh ${STAGEDIR}${PREFIX}/bin/jalview`
			`@${MKDIR} ${STAGEDIR}${DATADIR}`
			`${INSTALL_DATA} ${WRKSRC}/dist/* ${STAGEDIR}${DATADIR}`
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) and is also available as a general purpose alignment editor. WWW: http://www.jalview.org PR: 93054 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> 2006-02-13 10:42:13 +01:00
			`.include <bsd.port.mk>`