freebsd-ports/biology/paml/pkg-descr

Phylogenetic Analysis by Maximum Likelihood (PAML)

PAML is a package of programs for phylogenetic analyses of DNA or protein
sequences using maximum likelihood.  It is not good for tree making.  It may be
used to estimate parameters and test hypotheses for the study the evolutionary
process using trees reconstructed with programs such as PAUP*, PHYLIP, MOLPHY,
PhyML, or RaxML.

WWW: http://abacus.gene.ucl.ac.uk/software/paml.html
Add paml version 3.01. A set of utilities for performing Phylogenetic Analysis by Maximum Likelihood (PAML). PR: 19753 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> 2000-07-10 05:21:05 +02:00			`Phylogenetic Analysis by Maximum Likelihood (PAML)`

biology/paml: update to version 4.9c and various improvements - Update to version 4.9c - Set LICENSE=GPLv3 - Use the variable PORTDOCS to automate the generation of the DOCS plist (as suggested by mat@). - Install dat/ examples/ and Technical/ directories as well as files in the root directory of the distribution tarball. - Fix broken permissions. - Delete Windows executables. - Build and install useful binaries not built by upstream's Makefile. - Update pkg-descr. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D8040 2016-09-28 04:30:29 +02:00			`PAML is a package of programs for phylogenetic analyses of DNA or protein`
			`sequences using maximum likelihood. It is not good for tree making. It may be`
			`used to estimate parameters and test hypotheses for the study the evolutionary`
			`process using trees reconstructed with programs such as PAUP*, PHYLIP, MOLPHY,`
			`PhyML, or RaxML.`
Add paml version 3.01. A set of utilities for performing Phylogenetic Analysis by Maximum Likelihood (PAML). PR: 19753 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> 2000-07-10 05:21:05 +02:00
			`WWW: http://abacus.gene.ucl.ac.uk/software/paml.html`