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freebsd-ports/biology/iolib/pkg-plist

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- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
bin/append_sff
bin/convert_trace
bin/cram_dump
- Update to 1.14.9 - Use github
2017-02-24 19:57:56 +01:00
bin/cram_filter
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
bin/cram_index
- Update to 1.14.2
2015-09-17 14:54:47 +02:00
bin/cram_size
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
bin/extract_fastq
bin/extract_qual
bin/extract_seq
bin/get_comment
bin/hash_exp
bin/hash_extract
bin/hash_list
bin/hash_sff
bin/hash_tar
bin/index_tar
bin/io_lib-config
bin/makeSCF
bin/scf_dump
bin/scf_info
bin/scf_update
bin/scram_flagstat
bin/scram_merge
bin/scram_pileup
- Update from 1.13.5 to 1.13.7 - Add libtool to USES - Take maintainership
2014-05-31 19:57:06 +02:00
bin/scram_test
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
bin/scramble
bin/srf2fasta
bin/srf2fastq
bin/srf_dump_all
bin/srf_extract_hash
bin/srf_extract_linear
bin/srf_filter
bin/srf_index_hash
bin/srf_info
bin/srf_list
bin/trace_dump
bin/ztr_dump
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/Read.h
include/io_lib/abi.h
include/io_lib/alf.h
include/io_lib/array.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/bam.h
- Update to 1.14.9 - Use github
2017-02-24 19:57:56 +01:00
include/io_lib/bgzip.h
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
include/io_lib/binning.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/compress.h
include/io_lib/compression.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/cram.h
include/io_lib/cram_codecs.h
include/io_lib/cram_decode.h
include/io_lib/cram_encode.h
include/io_lib/cram_index.h
include/io_lib/cram_io.h
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
include/io_lib/cram_stats.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/cram_structs.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/deflate_interlaced.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/dstring.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/error.h
include/io_lib/expFileIO.h
include/io_lib/fpoint.h
include/io_lib/hash_table.h
include/io_lib/io_lib_config.h
include/io_lib/jenkins_lookup3.h
include/io_lib/mFILE.h
include/io_lib/mach-io.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/md5.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/misc.h
include/io_lib/open_trace_file.h
include/io_lib/os.h
include/io_lib/plain.h
- Update to 1.12.2 - Reset maintainer
2010-05-21 08:19:18 +02:00
include/io_lib/pooled_alloc.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/sam_header.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/scf.h
include/io_lib/scf_extras.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/scram.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/seqIOABI.h
include/io_lib/sff.h
include/io_lib/srf.h
include/io_lib/stdio_hack.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/string_alloc.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/tar_format.h
- Update to version 1.13.5 PR: 188863 Submitted by: ports fury
2014-04-26 04:35:37 +02:00
include/io_lib/thread_pool.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/traceType.h
include/io_lib/translate.h
include/io_lib/vlen.h
include/io_lib/xalloc.h
- Update to 1.13.0 - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
2013-04-30 17:41:49 +02:00
include/io_lib/zfio.h
Io_lib is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-29 01:34:20 +02:00
include/io_lib/ztr.h
lib/libstaden-read.a
lib/libstaden-read.so
- Update to 1-14-10 - Move USES to make portlint happy
2018-09-28 20:47:49 +02:00
lib/libstaden-read.so.13
lib/libstaden-read.so.13.0.0
Support stage Conver USE_GMAKE
2014-01-20 18:02:11 +01:00
man/man1/scramble.1.gz
man/man1/srf2fasta.1.gz
man/man1/srf2fastq.1.gz
man/man1/srf_index_hash.1.gz
man/man1/srf_info.1.gz
man/man1/srf_list.1.gz
man/man3/ExperimentFile.3.gz
man/man3/exp2read.3.gz
man/man3/fread_reading.3.gz
man/man3/fread_scf.3.gz
man/man3/fwrite_reading.3.gz
man/man3/fwrite_scf.3.gz
man/man3/read2exp.3.gz
man/man3/read2scf.3.gz
man/man3/read_allocate.3.gz
man/man3/read_deallocate.3.gz
man/man3/read_reading.3.gz
man/man3/read_scf.3.gz
man/man3/read_scf_header.3.gz
man/man3/scf2read.3.gz
man/man3/write_reading.3.gz
man/man3/write_scf.3.gz
man/man3/write_scf_header.3.gz
man/man4/Read.4.gz
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