Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 22:39:51 +02:00
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bin/nex2text_tree.pl
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bin/nexplot.pl
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bin/nextool.pl
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%%SITE_PERL%%/Bio/NEXUS.pm
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2012-02-09 02:23:59 +01:00
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%%SITE_PERL%%/Bio/NEXUS/._UnalignedBlock.pm
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 22:39:51 +02:00
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%%SITE_PERL%%/Bio/NEXUS/DataBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/CodonsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/NotesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/NHXCmd.pm
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%%SITE_PERL%%/Bio/NEXUS/HistoryBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxUnit.pm
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%%SITE_PERL%%/Bio/NEXUS/CharactersBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/SpanBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/UnalignedBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxUnitSet.pm
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%%SITE_PERL%%/Bio/NEXUS/DistancesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/UnknownBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/Node.pm
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%%SITE_PERL%%/Bio/NEXUS/Matrix.pm
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%%SITE_PERL%%/Bio/NEXUS/Tree.pm
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%%SITE_PERL%%/Bio/NEXUS/WeightSet.pm
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%%SITE_PERL%%/Bio/NEXUS/SetsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxaBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TreesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/AssumptionsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/Block.pm
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%%SITE_PERL%%/Bio/NEXUS/Functions.pm
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%%SITE_PERL%%/Bio/NEXUS/Util/Exceptions.pm
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%%SITE_PERL%%/Bio/NEXUS/Util/Logger.pm
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2010-09-07 09:15:24 +02:00
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%%SITE_PERL%%/Bio/NEXUS/Tools/NexModifier.pm
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%%SITE_PERL%%/Bio/NEXUS/Tools/NexPlotter.pm
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%%SITE_PERL%%/Bio/NEXUS/Tools/GraphicsParams.pm
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 22:39:51 +02:00
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%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS/.packlist
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@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
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@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
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2010-09-07 09:15:24 +02:00
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@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Tools
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 22:39:51 +02:00
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@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Util
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@dirrmtry %%SITE_PERL%%/Bio/NEXUS
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@dirrmtry %%SITE_PERL%%/Bio
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