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freebsd-ports/biology/htslib/pkg-plist

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HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
bin/bgzip
biology/htslib: update 1.1 -> 1.2.1 PR: 198291 Submitted by: Reed Cartwright <cartwright@asu.edu>
2015-03-06 13:45:22 +01:00
bin/htsfile
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
bin/tabix
include/htslib/bgzf.h
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 - Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require version 1.3 of htslib. - Add CURL option to htslib - Add TEST_TARGET with perl and bash dependencies for testing - Tidy up spacing and pkg-message's PR: 205524 PR: 205525 PR: 205526 Submitted by: cartwright@asu.edu (maintainer)
2015-12-25 02:31:09 +01:00
include/htslib/cram.h
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
include/htslib/faidx.h
include/htslib/hfile.h
include/htslib/hts.h
include/htslib/hts_defs.h
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 - Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require version 1.3 of htslib. - Add CURL option to htslib - Add TEST_TARGET with perl and bash dependencies for testing - Tidy up spacing and pkg-message's PR: 205524 PR: 205525 PR: 205526 Submitted by: cartwright@asu.edu (maintainer)
2015-12-25 02:31:09 +01:00
include/htslib/kbitset.h
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
include/htslib/kfunc.h
include/htslib/khash.h
include/htslib/khash_str2int.h
include/htslib/klist.h
include/htslib/knetfile.h
include/htslib/kseq.h
include/htslib/ksort.h
include/htslib/kstring.h
biology/htslib: update 1.1 -> 1.2.1 PR: 198291 Submitted by: Reed Cartwright <cartwright@asu.edu>
2015-03-06 13:45:22 +01:00
include/htslib/regidx.h
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
include/htslib/sam.h
include/htslib/synced_bcf_reader.h
include/htslib/tbx.h
include/htslib/vcf.h
include/htslib/vcf_sweep.h
include/htslib/vcfutils.h
lib/libhts.a
lib/libhts.so
lib/libhts.so.1
lib/libhts.so.%%PORTVERSION%%
libdata/pkgconfig/htslib.pc
biology/htslib: update 1.1 -> 1.2.1 PR: 198291 Submitted by: Reed Cartwright <cartwright@asu.edu>
2015-03-06 13:45:22 +01:00
man/man1/htsfile.1.gz
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 23:35:07 +01:00
man/man1/tabix.1.gz
man/man5/faidx.5.gz
man/man5/sam.5.gz
man/man5/vcf.5.gz
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