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freebsd-ports/science/py-pyteomics/Makefile

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Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
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# $FreeBSD$
PORTNAME= pyteomics
Update to 4.4.0 Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
2020-11-21 10:20:52 +01:00
PORTVERSION= 4.4.0
Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
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CATEGORIES= science python
- Update to 2.1.5 and [1]: - Allow to build with python3 - Simplify MASTER_SITES - Don't remove python shared directories Prompted by: rm [1]
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MASTER_SITES= CHEESESHOP
Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
Update to 4.1 - Update pkg-descr - Update WWW - Take maintainership Changes: https://pyteomics.readthedocs.io/en/latest/changelog.html
2019-04-18 20:00:52 +02:00
MAINTAINER= sunpoet@FreeBSD.org
Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
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COMMENT= Python modules for proteomics data analysis
- Add LICENSE - Add NO_ARCH
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LICENSE= APACHE20
Unbreak bulk -a
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USES= python:3.6+
Update to 4.1 - Update pkg-descr - Update WWW - Take maintainership Changes: https://pyteomics.readthedocs.io/en/latest/changelog.html
2019-04-18 20:00:52 +02:00
USE_PYTHON= autoplist concurrent distutils
- Add LICENSE - Add NO_ARCH
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NO_ARCH= yes
Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
2013-03-28 14:05:42 +01:00
Add DF, GRAPHICS, TDA, UNIMOD and XML options
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OPTIONS_DEFINE= DF GRAPHICS TDA UNIMOD XML
OPTIONS_DEFAULT=DF GRAPHICS TDA UNIMOD XML
DF_DESC= DataFrame support
GRAPHICS_DESC= Graphics support
TDA_DESC= Target-decoy approach support
UNIMOD_DESC= Unimod database support
XML_DESC= XML support
Update to 4.4.0 Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
2020-11-21 10:20:52 +01:00
DF_RUN_DEPENDS= ${PY_PANDAS}
Add DF, GRAPHICS, TDA, UNIMOD and XML options
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GRAPHICS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR}
TDA_RUN_DEPENDS= ${PYNUMPY}
UNIMOD_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}sqlalchemy13>=0:databases/py-sqlalchemy13@${PY_FLAVOR}
XML_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml@${PY_FLAVOR} \
${PYNUMPY}
Add new port science/pyteomics: Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics
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.include <bsd.port.mk>
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