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- Update The Glorious Glasgow Haskell Compiler to version 7.4.2 - Update Haskell Platform to version 2012.4.0.0 - Update Gtk2Hs to 0.12.4 - Transfer maintainership of math/hs-math-functions to haskell@ [1] Please note that port revisions for all the Haskell ports without version changes are bumped. Some further highlights of the update: - Trim Makefile headers - Enable dynamic libraries and dynamic linking by default - Enable bootstrapping by versions of GHC and HsColour already installed - Use GCC and binutils from ports New ports (32): devel/hs-List 0.5.1 devel/hs-ReadArgs 1.2.1 devel/hs-SafeSemaphore 0.9.0 devel/hs-activehs-base 0.3.0.2 devel/hs-async 2.0.1.3 devel/hs-basic-prelude 0.3.1.0 devel/hs-classy-prelude 0.4.1 devel/hs-classy-prelude-conduit 0.4.1 devel/hs-data-pprint 0.2.1.4 devel/hs-date-cache 0.3.0 devel/hs-fsnotify 0.0.4 devel/hs-hinotify 0.3.5 devel/hs-hspec-expectations 0.3.0.3 devel/hs-kqueue 0.1.2.4 devel/hs-monad-logger 0.2.3 devel/hs-optparse-applicative 0.4.2 devel/hs-project-template 0.1.0.1 devel/hs-setenv 0.1.0 devel/hs-simple-reflect 0.2 devel/hs-threads 0.5.0.1 devel/hs-time-compat 0.1.0.2 devel/hs-unix-time 0.1.4 devel/hs-word8 0.0.2 graphics/hs-dia-base 0.1.1.2 graphics/hs-dia-functions 0.2.1.3 mail/hs-mime-types 0.1.0.0 net/hs-network-info 0.2.0.3 net/hs-network-multicast 0.0.7 security/hs-cipher-aes 0.1.5 textproc/hs-hexpat 0.20.3 www/hs-activehs 0.3.0.1 www/hs-http-reverse-proxy 0.1.0.6 Updated ports (211): archivers/hs-tar 0.4.0.0_1 --> 0.4.0.1 archivers/hs-zip-archive 0.1.1.8_1 --> 0.1.2.1 archivers/hs-zlib 0.5.3.3_1 --> 0.5.4.0 archivers/hs-zlib-bindings 0.1.0.1_1 --> 0.1.1.2 archivers/hs-zlib-conduit 0.4.0.2 --> 0.5.0.3 archivers/hs-zlib-enum 0.2.2.1_1 --> 0.2.3 audio/hs-libmpd 0.8.0_1 --> 0.8.0.1 benchmarks/hs-criterion 0.6.0.1_2 --> 0.6.2.0 converters/hs-dataenc 0.14.0.3_2 --> 0.14.0.4 converters/hs-json 0.5_1 --> 0.7 databases/hs-persistent 0.9.0.4_1 --> 1.0.2.2 databases/hs-persistent-sqlite 0.9.0.2_1 --> 1.0.1 databases/hs-persistent-template 0.9.0.2_1 --> 1.0.0.2 devel/hs-Boolean 0.0.1_5 --> 0.1.1 devel/hs-DeepArrow 0.3.5_2 --> 0.3.7 devel/hs-HUnit 1.2.4.2_2 --> 1.2.5.1 devel/hs-MemoTrie 0.5_1 --> 0.6.1 devel/hs-MissingH 1.1.1.0_2 --> 1.2.0.0 devel/hs-MonadCatchIO-mtl 0.3.0.4_3 --> 0.3.0.5 devel/hs-QuickCheck 2.4.2_1 --> 2.5.1.1 devel/hs-Stream 0.4.6_2 --> 0.4.6.1 devel/hs-TypeCompose 0.9.1_2 --> 0.9.7 devel/hs-abstract-deque 0.1.5_1 --> 0.1.6 devel/hs-alex 3.0.1_1 --> 3.0.2 devel/hs-arrows 0.4.4.0_4 --> 0.4.4.1 devel/hs-asn1-data 0.6.1.3_1 --> 0.7.1 devel/hs-base-unicode-symbols 0.2.2.3_2 --> 0.2.2.4 devel/hs-base64-bytestring 0.1.2.0 --> 1.0.0.0 devel/hs-blaze-builder-conduit 0.4.0.2_1 --> 0.5.0.3 devel/hs-blaze-builder-enumerator 0.2.0.4_1 --> 0.2.0.5 devel/hs-blaze-textual 0.2.0.6_2 --> 0.2.0.8 devel/hs-bytestring-nums 0.3.5_2 --> 0.3.6 devel/hs-c2hs 0.16.3_3 --> 0.16.4 devel/hs-cmdargs 0.9.5_1 --> 0.10.1 devel/hs-conduit 0.4.2_1 --> 0.5.5 devel/hs-configurator 0.2.0.0_2 --> 0.2.0.1 devel/hs-cpphs 1.14 --> 1.15 devel/hs-darcs 2.8.1_1 --> 2.8.3 devel/hs-data-default 0.4.0_1 --> 0.5.0 devel/hs-directory-tree 0.10.1 --> 0.11.0 devel/hs-edit-distance 0.2.1_1 --> 0.2.1.1 devel/hs-fast-logger 0.0.2_2 --> 0.3.1 devel/hs-file-embed 0.0.4.4_1 --> 0.0.4.6 devel/hs-filemanip 0.3.5.2_6 --> 0.3.6.2 devel/hs-filestore 0.5_1 --> 0.5.0.1 devel/hs-filesystem-conduit 0.4.0_1 --> 0.5.0.2 devel/hs-gconf 0.12.1_3 --> 0.12.1.1 devel/hs-ghc-events 0.4.0.0_2 --> 0.4.2.0 devel/hs-ghc-mtl 1.0.1.1_2 --> 1.0.1.2 devel/hs-gio 0.12.3_1 --> 0.12.4 devel/hs-git-annex 3.20120807 --> 3.20121211 devel/hs-glib 0.12.3.1_1 --> 0.12.4 devel/hs-gtk2hs-buildtools 0.12.3.1_1 --> 0.12.4 devel/hs-haddock 2.10.0_1 --> 2.11.0 devel/hs-happy 1.18.9_1 --> 1.18.10 devel/hs-hashable 1.1.2.3_1 --> 1.1.2.5 devel/hs-hashed-storage 0.5.9_2 --> 0.5.10 devel/hs-hashtables 1.0.1.6_1 --> 1.0.1.8 devel/hs-haskell-src-exts 1.13.3_1 --> 1.13.5 devel/hs-hastache 0.4.1 --> 0.4.2 devel/hs-hint 0.3.3.4_1 --> 0.3.3.5 devel/hs-hlint 1.8.30 --> 1.8.39 devel/hs-hoogle 4.2.11_1 --> 4.2.14 devel/hs-hslogger 1.1.5_2 --> 1.2.1 devel/hs-hspec 1.2.0.1 --> 1.4.2 devel/hs-language-javascript 0.5.4_1 --> 0.5.7 devel/hs-largeword 1.0.1_2 --> 1.0.3 devel/hs-lifted-base 0.1.1_1 --> 0.2 devel/hs-logict 0.5.0.1_1 --> 0.5.0.2 devel/hs-monad-control 0.3.1.3_1 --> 0.3.1.4 devel/hs-mtl 2.1.1_1 --> 2.1.2 devel/hs-murmur-hash 0.1.0.5_2 --> 0.1.0.6 devel/hs-parallel 3.2.0.2_1 --> 3.2.0.3 devel/hs-pool-conduit 0.1.0.2_1 --> 0.1.0.3 devel/hs-primitive 0.4.1_2 --> 0.5.0.1 devel/hs-resource-pool 0.2.1.0_1 --> 0.2.1.1 devel/hs-resourcet 0.3.3.1 --> 0.4.4 devel/hs-silently 1.2.0.2 --> 1.2.4 devel/hs-split 0.1.4.3 --> 0.2.1.1 devel/hs-stm 2.3_1 --> 2.4 devel/hs-syb 0.3.6.1_1 --> 0.3.7 devel/hs-syb-with-class 0.6.1.3_2 --> 0.6.1.4 devel/hs-system-fileio 0.3.8 --> 0.3.10 devel/hs-system-filepath 0.4.6_1 --> 0.4.7 devel/hs-tagged 0.4.2.1_1 --> 0.4.4 devel/hs-temporary 1.1.2.3_1 --> 1.1.2.4 devel/hs-terminfo 0.3.2.4 --> 0.3.2.5 devel/hs-test-framework 0.6_1 --> 0.8 devel/hs-test-framework-hunit 0.2.7_2 --> 0.3.0 devel/hs-test-framework-quickcheck2 0.2.12.2_1 --> 0.3.0.1 devel/hs-text 0.11.2.0_1 --> 0.11.2.3 devel/hs-threadscope 0.2.1_3 --> 0.2.2 devel/hs-uniplate 1.6.7_1 --> 1.6.10 devel/hs-unix-compat 0.3.0.1_1 --> 0.4.0.0 devel/hs-unordered-containers 0.2.1.0_1 --> 0.2.2.1 devel/hs-uuagc 0.9.40.3_1 --> 0.9.42.2 devel/hs-uuagc-cabal 1.0.2.0_2 --> 1.0.4.0 devel/hs-vault 0.2.0.0_1 --> 0.2.0.1 devel/hs-vector 0.9.1_2 --> 0.10.0.1 devel/hs-vector-algorithms 0.5.4_1 --> 0.5.4.2 devel/hs-void 0.5.6 --> 0.5.8 ftp/hs-curl 1.3.7_3 --> 1.3.8 graphics/hs-cairo 0.12.3.1_1 --> 0.12.4 lang/hs-unlambda 0.1_6 --> 0.1.3 mail/hs-email-validate 0.2.8_1 --> 0.3.2 mail/hs-mime 0.3.3.2 --> 0.3.4 mail/hs-mime-mail 0.4.1.1_2 --> 0.4.1.2 math/hs-categories 1.0.3_1 --> 1.0.4 math/hs-comonad 1.1.1.6_1 --> 3.0.0.2 math/hs-comonad-transformers 2.1.2 --> 3.0 math/hs-data-lens 2.10.0_1 --> 2.10.2 math/hs-data-lens-template 2.1.5_1 --> 2.1.7 math/hs-math-functions 0.1.1.1_2 --> 0.1.1.2 [1] math/hs-mwc-random 0.12.0.0_1 --> 0.12.0.1 math/hs-pointed 2.1.0.2_1 --> 3.0.1 math/hs-semigroupoids 1.3.4 --> 3.0.0.1 math/hs-semigroups 0.8.3.2_1 --> 0.8.4.1 math/hs-statistics 0.10.1.0_1 --> 0.10.2.0 math/hs-vector-space 0.8.2 --> 0.8.6 multimedia/hs-gstreamer 0.12.1.1_1 --> 0.12.1.2 net/hs-network 2.3.0.13_1 --> 2.3.1.0 net/hs-network-conduit 0.4.0.1_1 --> 0.6.1.1 net/hs-pcap 0.4.5.1_4 --> 0.4.5.2 net/hs-sendfile 0.7.6_1 --> 0.7.8 net/hs-simple-sendfile 0.2.4 --> 0.2.8 net/hs-socks 0.4.1_1 --> 0.4.2 print/hs-hscolour 1.20.2,1 --> 1.20.3,1 security/hs-Crypto 4.2.5_1 --> 4.2.5.1 security/hs-HsOpenSSL 0.10.3.2 --> 0.10.3.3 security/hs-RSA 1.2.1.0_1 --> 1.2.2.0 security/hs-SHA 1.5.0.1_1 --> 1.6.1 security/hs-certificate 1.2.3_1 --> 1.3.3 security/hs-clientsession 0.7.5_1 --> 0.8.0.1 security/hs-cprng-aes 0.2.3_2 --> 0.2.4 security/hs-crypto-conduit 0.3.2_1 --> 0.4.1 security/hs-crypto-pubkey-types 0.1.1_1 --> 0.2.0 security/hs-cryptocipher 0.3.5 --> 0.3.6 security/hs-cryptohash 0.7.5_1 --> 0.7.9 security/hs-digest 0.0.1.1_1 --> 0.0.1.2 security/hs-monadcryptorandom 0.4.1_1 --> 0.5 security/hs-pureMD5 2.1.0.3_2 --> 2.1.2.1 security/hs-pwstore-fast 2.2_2 --> 2.3 security/hs-skein 0.1.0.7_1 --> 0.1.0.10 security/hs-tls 0.9.5_1 --> 1.0.2 security/hs-tls-extra 0.4.6_1 --> 0.5.0 sysutils/hs-angel 0.3.2_1 --> 0.3.3 textproc/hs-HStringTemplate 0.6.8_2 --> 0.6.12 textproc/hs-attoparsec-conduit 0.4.0.1_1 --> 0.5.0.3 textproc/hs-attoparsec-enumerator 0.3_2 --> 0.3.1 textproc/hs-blaze-html 0.5.0.0 --> 0.5.1.1 textproc/hs-blaze-markup 0.5.1.0_1 --> 0.5.1.2 textproc/hs-case-insensitive 0.4.0.1_2 --> 0.4.0.3 textproc/hs-citeproc-hs 0.3.4_1 --> 0.3.6 textproc/hs-double-conversion 0.2.0.4_2 --> 0.2.0.5 textproc/hs-highlighting-kate 0.5.1_1 --> 0.5.3.3 textproc/hs-hs-bibutils 4.12_4 --> 4.15 textproc/hs-html-conduit 0.0.1_1 --> 0.1.0.4 textproc/hs-hxt 9.2.2_1 --> 9.3.1.1 textproc/hs-lhs2tex 1.17_4 --> 1.18.1 textproc/hs-pandoc 1.9.4.2 --> 1.9.4.5 textproc/hs-parsec 3.1.2_1 --> 3.1.3 textproc/hs-regex-pcre-builtin 0.94.2.1.7.7_4 --> 0.94.4.3.8.31 textproc/hs-regex-posix 0.95.1_2 --> 0.95.2 textproc/hs-stringsearch 0.3.6.3_2 --> 0.3.6.4 textproc/hs-tagsoup 0.12.6_2 --> 0.12.8 textproc/hs-tagstream-conduit 0.3.2_1 --> 0.5.3 textproc/hs-texmath 0.6.0.6_1 --> 0.6.1.1 textproc/hs-xml-conduit 0.7.0.3_1 --> 1.0.3.3 textproc/hs-xml-types 0.3.2 --> 0.3.3 textproc/hs-xmlhtml 0.2.0.2 --> 0.2.0.3 textproc/hs-yaml 0.7.0.3 --> 0.8.1.1 www/hs-HTTP 4000.2.3_1 --> 4000.2.5 www/hs-authenticate 1.2.1.1_1 --> 1.3.2 www/hs-cookie 0.4.0_1 --> 0.4.0.1 www/hs-gitit 0.10.0.1 --> 0.10.0.2 www/hs-hamlet 1.0.1.4 --> 1.1.1.1 www/hs-happstack 7.0.0_1 --> 7.0.1 www/hs-happstack-server 7.0.3 --> 7.1.1 www/hs-heist 0.8.1.1 --> 0.8.2 www/hs-hjsmin 0.1.2_1 --> 0.1.3 www/hs-http-conduit 1.4.1.10 --> 1.8.4.3 www/hs-http-date 0.0.2_1 --> 0.0.3 www/hs-http-server 1_5 --> 1.0.1 www/hs-http-types 0.6.11_1 --> 0.7.3.0.1 www/hs-path-pieces 0.1.1_1 --> 0.1.2 www/hs-shakespeare 1.0.0.2_1 --> 1.0.2 www/hs-shakespeare-css 1.0.1.2_1 --> 1.0.2 www/hs-shakespeare-js 1.0.0.3_1 --> 1.1.0 www/hs-shakespeare-text 1.0.0.2_1 --> 1.0.0.5 www/hs-snap 0.9.0.1 --> 0.9.2.2 www/hs-snap-core 0.9.0 --> 0.9.2.2 www/hs-snap-server 0.9.0 --> 0.9.2.4 www/hs-wai 1.2.0.3 --> 1.3.0.1 www/hs-wai-app-static 1.2.0.4 --> 1.3.0.4 www/hs-wai-extra 1.2.0.5 --> 1.3.0.4 www/hs-wai-logger 0.1.4_1 --> 0.3.0 www/hs-wai-test 1.2.0.2_1 --> 1.3.0 www/hs-warp 1.2.2 --> 1.3.5 www/hs-yesod 1.0.1.6_1 --> 1.1.4.1 www/hs-yesod-auth 1.0.2.1_1 --> 1.1.2 www/hs-yesod-core 1.0.1.2_1 --> 1.1.6.1 www/hs-yesod-default 1.0.1.1_1 --> 1.1.2 www/hs-yesod-form 1.0.0.4_1 --> 1.2.0.1 www/hs-yesod-json 1.0.0.1_1 --> 1.1.2 www/hs-yesod-persistent 1.0.0.1_1 --> 1.1.0 www/hs-yesod-platform 1.0.5 --> 1.1.5 www/hs-yesod-routes 1.0.1.2_1 --> 1.1.1.1 www/hs-yesod-static 1.0.0.3_1 --> 1.1.1.1 www/hs-yesod-test 0.2.1 --> 0.3.1.1 x11-toolkits/hs-gtk 0.12.3.1 --> 0.12.4 x11-toolkits/hs-pango 0.12.3_1 --> 0.12.4 Removed ports (1): textproc/hs-xml2html 0.1.2.3_1 Approved by: wen (maintainer) [1] Obtained from: FreeBSD Haskell
2012-12-20 03:23:04 +01:00
# Created by: Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 06:02:13 +01:00
# $FreeBSD$
PORTNAME= bio
- Update to 0.5.2 Obtained from: FreeBSD Haskell
2012-06-04 00:21:27 +02:00
PORTVERSION= 0.5.2
- Reroll and update bootstrap Haskell compilers to GHC 7.6.3 on 8.x and 9.x in order to prevent run-time breakage after the recent changes in libiconv - Bump port revision for lang/ghc and all dependents, as a consequence Obtained from: FreeBSD Haskell
2014-03-29 01:52:54 +01:00
PORTREVISION= 8
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 06:02:13 +01:00
CATEGORIES= science haskell
- Pass maintainership to haskell@FreeBSD.org: audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows devel/hs-checkers, devel/hs-convertible, devel/hs-datetime devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths devel/hs-ghc-paths-docs, devel/hs-haskeline devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck devel/hs-split, devel/hs-testpack, devel/hs-transformers devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat devel/hs-utility-ht, devel/hs-uuagc, devel/hs-uulib devel/hs-uvector, devel/hs-uvector-algorithms, graphics/hs-HGL lang/hs-brainfuck, lang/hs-unlambda, mail/hs-mime, math/hs-Agda math/hs-Agda-executable, math/hs-category-extras, math/hs-erf math/hs-mwc-random, math/hs-probability, math/hs-statistics math/hs-vector-space, print/hs-hscolour, print/hs-hscolour-docs science/hs-bio, textproc/hs-Diff, textproc/hs-feed textproc/hs-tagsoup, textproc/hs-texmath, textproc/hs-xml www/hs-HTTP, www/hs-cgi, www/hs-fastcgi, www/hs-http-server www/hs-oeis, www/hs-scgi, www/hs-url, x11-toolkits/hs-GLURaw x11-toolkits/hs-OpenGLRaw Approved by: pgj (mentor)
2010-05-26 13:18:46 +02:00
MAINTAINER= haskell@FreeBSD.org
- Update The Glorious Glasgow Haskell Compiler to version 7.6.3 - Update Haskell Platform to version 2013.2.0.0 Please note that port revisions for all the Haskell ports without version changes are bumped. Some highlights of the update: - Fix PDF generation for pandoc [1] - From now on, PREFIX/{lib,share,share/doc}/cabal/ghc-GHC_VERSION are used for hs- ports (Cabal packages) as prefixes to avoid problems when upgrading with portmaster(8) [2] - Experimental support for LLVM-based code generation (disabled by default) - Many simplifications, refactoring in bsd.cabal.mk New ports (11): devel/hs-asn1-types 0.1.3 devel/hs-data-default-class 0.0.1 devel/hs-data-default-instances-base 0.0.1 devel/hs-data-default-instances-containers 0.0.1 devel/hs-data-default-instances-dlist 0.0.1 devel/hs-data-default-instances-old-locale 0.0.1 devel/hs-extensible-exceptions 0.1.1.4 devel/hs-mmorph 1.0.0 devel/hs-quickcheck-io 0.1.0 x11-toolkits/hs-GLURaw 1.3.0.0 x11-toolkits/hs-OpenGLRaw 1.3.0.0 Updated ports (104): archivers/hs-zlib 0.5.4.0_1 --> 0.5.4.1 databases/hs-persistent 1.1.5.1 --> 1.2.0.1 databases/hs-persistent-sqlite 1.1.5 --> 1.2.0 databases/hs-persistent-template 1.1.2.4 --> 1.2.0 devel/hs-HUnit 1.2.5.1_1 --> 1.2.5.2 devel/hs-IORefCAS 0.2_3 --> 0.2.0.1 devel/hs-MonadRandom 0.1.8 --> 0.1.9 devel/hs-QuickCheck 2.5.1.1_1 --> 2.6 devel/hs-abstract-deque 0.1.6_1 --> 0.2 devel/hs-alex 3.0.2_1 --> 3.0.5 devel/hs-async 2.0.1.3_1 --> 2.0.1.4 devel/hs-basic-prelude 0.3.4.0 --> 0.3.5.0 devel/hs-blaze-builder 0.3.1.0_4 --> 0.3.1.1 devel/hs-byteorder 1.0.3_4 --> 1.0.4 devel/hs-cabal-install 0.14.0_4 --> 1.16.0.2 devel/hs-classy-prelude 0.5.3 --> 0.5.7 devel/hs-cmdargs 0.10.2 --> 0.10.3 devel/hs-conduit 1.0.2 --> 1.0.5 devel/hs-data-default 0.5.0_1 --> 0.5.3 devel/hs-fsnotify 0.0.6 --> 0.0.11 devel/hs-generic-deriving 1.4.0 --> 1.5.0 devel/hs-git-annex 4.20130323_1 --> 4.20130601 devel/hs-haddock 2.11.0_1 --> 2.13.2 devel/hs-hashable 1.2.0.5 --> 1.1.2.5,1 devel/hs-hlint 1.8.43 --> 1.8.45 devel/hs-hspec 1.4.4 --> 1.5.4 devel/hs-hspec-expectations 0.3.0.3_1 --> 0.3.2 devel/hs-largeword 1.0.4 --> 1.0.5 devel/hs-lens 3.8.7.3 --> 3.9.0.2 devel/hs-lifted-base 0.2.0.2 --> 0.2.0.5 devel/hs-monad-control 0.3.1.4_1 --> 0.3.2.1 devel/hs-monad-logger 0.3.0.1 --> 0.3.1.1 devel/hs-monad-par 0.3.4.1 --> 0.3.4.2 devel/hs-pool-conduit 0.1.1_1 --> 0.1.2 devel/hs-profunctors 3.3 --> 3.3.0.1 devel/hs-reflection 1.1.7 --> 1.3.2 devel/hs-resourcet 0.4.5 --> 0.4.7.1 devel/hs-show 0.5 --> 0.6 devel/hs-split 0.2.1.1_1 --> 0.2.2 devel/hs-stm 2.4_1 --> 2.4.2 devel/hs-syb 0.3.7_1 --> 0.4.0 devel/hs-tagged 0.4.4_1 --> 0.6 devel/hs-text 0.11.2.3_1 --> 0.11.3.1 devel/hs-unix-compat 0.4.1.0 --> 0.4.1.1 devel/hs-unix-time 0.1.5 --> 0.1.8 devel/hs-unordered-containers 0.2.3.0 --> 0.2.3.1 devel/hs-utility-ht 0.0.8_3 --> 0.0.9 devel/hs-uuagc 0.9.42.2_3 --> 0.9.42.3 devel/hs-uuid 1.2.9 --> 1.2.13 devel/hs-void 0.5.11 --> 0.6 math/hs-NumInstances 1.2 --> 1.3 math/hs-comonad-transformers 3.0.1_1 --> 3.0.2 math/hs-semigroups 0.9 --> 0.9.1 math/hs-statistics 0.10.2.0_2 --> 0.10.3.1 net/hs-network 2.3.1.0_1 --> 2.4.1.2 net/hs-publicsuffixlist 0.0.3 --> 0.1 net/hs-socks 0.5.0 --> 0.5.1 security/hs-certificate 1.3.5_1 --> 1.3.7 security/hs-cipher-aes 0.1.7 --> 0.1.8 security/hs-clientsession 0.8.1_1 --> 0.9 security/hs-crypto-api 0.11 --> 0.12.1 security/hs-crypto-conduit 0.5.0 --> 0.5.2 security/hs-crypto-pubkey 0.1.2_1 --> 0.1.3 security/hs-crypto-pubkey-types 0.2.0_1 --> 0.3.2 security/hs-cryptocipher 0.4.0_1 --> 0.5.0 security/hs-cryptohash 0.8.3_1 --> 0.9.0 security/hs-skein 0.1.0.12 --> 1.0.3 textproc/hs-HaXml 1.23.3_2 --> 1.24 textproc/hs-attoparsec-conduit 1.0.0 --> 1.0.1 textproc/hs-blaze-html 0.6.0.0 --> 0.6.1.1 textproc/hs-blaze-markup 0.5.1.4 --> 0.5.1.5 textproc/hs-case-insensitive 1.0 --> 1.0.0.2 textproc/hs-highlighting-kate 0.5.3.8 --> 0.5.3.9 textproc/hs-hs-bibutils 4.17 --> 5.0 textproc/hs-polyparse 1.8_3 --> 1.9 textproc/hs-texmath 0.6.1.3 --> 0.6.1.5 textproc/hs-xml 1.3.12_4 --> 1.3.13 textproc/hs-yaml 0.8.2.3 --> 0.8.2.4 www/hs-HTTP 4000.2.5_1 --> 4000.2.8 www/hs-cgi 3001.1.7.4_6,1 --> 3001.1.7.5,1 www/hs-hamlet 1.1.6.3 --> 1.1.7.1 www/hs-happstack-server 7.1.7 --> 7.1.7.1 www/hs-heist 0.11.1 --> 0.12.0 www/hs-http-conduit 1.9.0 --> 1.9.3 www/hs-http-reverse-proxy 0.1.1.3 --> 0.1.1.6 www/hs-shakespeare 1.0.3.1 --> 1.0.5 www/hs-shakespeare-css 1.0.3 --> 1.0.5.1 www/hs-shakespeare-js 1.1.2.1 --> 1.1.4 www/hs-snap 0.11.2 --> 0.12.0 www/hs-wai-extra 1.3.2.4 --> 1.3.4 www/hs-wai-test 1.3.0.4 --> 1.3.1 www/hs-warp 1.3.7.4 --> 1.3.8.1 www/hs-yesod 1.1.9.2 --> 1.2.0.1 www/hs-yesod-auth 1.1.5.3 --> 1.2.0 www/hs-yesod-core 1.1.8.2 --> 1.2.0.4 www/hs-yesod-form 1.2.1.3 --> 1.3.0 www/hs-yesod-persistent 1.1.0.1_1 --> 1.2.0 www/hs-yesod-platform 1.1.8 --> 1.2.0.1 www/hs-yesod-routes 1.1.2 --> 1.2.0 www/hs-yesod-static 1.1.2.2 --> 1.2.0 www/hs-yesod-test 0.3.5 --> 1.2.0 x11-toolkits/hs-GLUT 2.1.2.1_7,1 --> 2.4.0.0,1 x11-toolkits/hs-OpenGL 2.2.3.1_4,1 --> 2.8.0.0,1 x11/hs-xmobar 0.16_2 --> 0.17 Removed ports (2): www/hs-yesod-default 1.1.3.2 www/hs-yesod-json 1.1.2.1 PR: ports/179146 [1] Requested by: Omar Thameen <omar@biglist.com> [1] Reported by: sperber, bapt [2] Tested by: sperber [2] Obtained from: FreeBSD Haskell
2013-06-04 20:53:40 +02:00
COMMENT= Bioinformatics library
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 06:02:13 +01:00
- Please welcome GHC 7.0.3 GHC in the ports tree has been updated to 7.0.3 and all other Haskell ports are also updated to their corresponding Haskell Platform versions, or latest versions. We would like to acknowledge the support of the FreeBSD Donations Team and Eotvos Lorand University, Faculty of Informatics who contributed to the server that we used for testing. We would also like to thank all the testers who tested FreeBSD Haskell ports and provided their feedback. PR: ports/156642 Approved by: tabthorpe (mentor) Obtained from: FreeBSD Haskell
2011-05-09 07:28:57 +02:00
LICENSE= LGPL21
- Update to 0.5.2 Obtained from: FreeBSD Haskell
2012-06-04 00:21:27 +02:00
USE_CABAL= mtl parallel parsec QuickCheck>=2 tagsoup>=0.8
EXECUTABLE= fastout flowclip flx frecover frename orf rselect-pe
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 06:02:13 +01:00
Introduce a new (and hopefully better) ports infrastructure for Haskell Cabal ports which makes possible the direct translation of Cabal package descriptions to FreeBSD ports. It promises both easier addition and maintenance for Cabal-based ports.
2010-05-12 18:33:59 +02:00
.include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk"
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 06:02:13 +01:00
.include <bsd.port.mk>
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