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Reassign biology/ perl modules to perl@.

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Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.
This commit is contained in:
Adam Weinberger 2015-05-08 18:12:36 +00:00
parent 83dcea8eb8
commit 03f1abf704
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=385811
8 changed files with 22 additions and 21 deletions
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2
biology/p5-AcePerl/Makefile
View file

@ -8,7 +8,7 @@ CATEGORIES= biology databases perl5
MASTER_SITES= CPAN/Ace
PKGNAMEPREFIX= p5-
MAINTAINER= ports@FreeBSD.org
MAINTAINER= perl@FreeBSD.org
COMMENT= Perl5 interface to the ACEDB genome database system
LICENSE= ART10 GPLv1

12
biology/p5-AcePerl/files/patch-Makefile.PL
View file

@ -1,20 +1,20 @@
--- Makefile.PL.orig Fri Sep 28 16:13:04 2001
+++ Makefile.PL Fri Jan 25 14:11:26 2002
@@ -2,7 +2,7 @@
use ExtUtils::MakeMaker qw(prompt WriteMakefile);
--- Makefile.PL.orig 2006-01-04 15:18:10 UTC
+++ Makefile.PL
@@ -3,7 +3,7 @@ use ExtUtils::MakeMaker qw(prompt WriteM
use File::Path;
require 5.8.0;
-my $choice;
+my $choice = 3;
while (!$choice) {
$reply = prompt(
"\nWhat do you want to build?\n\n" .
@@ -22,8 +22,6 @@
@@ -23,8 +23,6 @@ my @extlib = ();
push @extlib,'Freesubs' if $choice >= 2;
push @extlib,'RPC' if $choice >= 3;
-print "\n";
-setup_sitedefs() if prompt("Do you want to install Ace::Browser? ","n") =~ /[yY]/;
my $headers = "./ace/wh";
my $headers = "./acelib/wh";
WriteMakefile(

6
biology/p5-AcePerl/files/patch-RPC__RPC.xs
View file

@ -1,6 +1,6 @@
--- ./RPC/RPC.xs.orig 2014-08-21 20:31:10.000000000 -0400
+++ ./RPC/RPC.xs 2014-08-21 20:31:34.000000000 -0400
@@ -153,7 +153,7 @@
--- RPC/RPC.xs.orig 2000-06-13 17:17:19 UTC
+++ RPC/RPC.xs
@@ -153,7 +153,7 @@ int arg;
break;
case '_':
if (strEQ(name, "_ACECLIENT_"))

4
biology/p5-AcePerl/files/patch-acelib_memsubs.c
View file

@ -1,5 +1,5 @@
--- acelib/memsubs.c.orig Mon Jan 11 02:01:29 1999
+++ acelib/memsubs.c Thu Jul 27 17:18:45 2000
--- acelib/memsubs.c.orig 2002-11-24 19:24:23 UTC
+++ acelib/memsubs.c
@@ -21,7 +21,7 @@
#if defined(NEXT) || defined(HP) || defined(MACINTOSH)
extern void* malloc(mysize_t size) ;

4
biology/p5-AcePerl/files/patch-acelib_wh_mydirent.h
View file

@ -1,5 +1,5 @@
--- acelib/wh/mydirent.h.orig Mon Jul 16 23:04:45 2001
+++ acelib/wh/mydirent.h Mon Aug 13 12:41:59 2001
--- acelib/wh/mydirent.h.orig 2002-11-14 20:00:06 UTC
+++ acelib/wh/mydirent.h
@@ -55,7 +55,7 @@
extern char *getwd(char *pathname) ;
#endif /* HP || SOLARIS || WIN32 */

6
biology/p5-AcePerl/files/patch-acelib_wh_mystdlib.h
View file

@ -1,6 +1,6 @@
--- acelib/wh/mystdlib.h.orig Mon Jul 16 23:04:45 2001
+++ acelib/wh/mystdlib.h Mon Aug 13 12:42:25 2001
@@ -161,7 +161,8 @@
--- acelib/wh/mystdlib.h.orig 2002-11-14 20:00:06 UTC
+++ acelib/wh/mystdlib.h
@@ -161,7 +161,8 @@ char *DosToPosix(char *path) ; /* define
#endif
#if defined(POSIX) || defined(LINUX) || defined(SOLARIS) || defined(SGI) || \

6
biology/p5-Bio-ASN1-EntrezGene/Makefile
View file

@ -3,16 +3,18 @@
PORTNAME= Bio-ASN1-EntrezGene
PORTVERSION= 1.70
PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
PKGNAMEPREFIX= p5-
MAINTAINER= ports@FreeBSD.org
MAINTAINER= perl@FreeBSD.org
COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene
WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-${PORTVERSION}
BUILD_DEPENDS= p5-bioperl>=0:${PORTSDIR}/biology/p5-bioperl
RUN_DEPENDS:= ${BUILD_DEPENDS}
USES= perl5
USE_PERL5= configure

3
biology/p5-bioperl/Makefile
View file

@ -3,7 +3,7 @@
PORTNAME= bioperl
PORTVERSION= 1.6.924
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
@ -18,7 +18,6 @@ LICENSE_COMB= dual
BUILD_DEPENDS= p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \
p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \
p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \
p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \
p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \
p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \