math/dgl: New port: Deep Graph Library
This commit is contained in:
Yuri Victorovich
parent
85aebbb57b
commit
0779caf299
10 changed files with 261 additions and 0 deletions
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@ -268,6 +268,7 @@
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SUBDIR += cvc5
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SUBDIR += dbcsr
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SUBDIR += deal.ii
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SUBDIR += dgl
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SUBDIR += dieharder
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SUBDIR += dihydrogen
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SUBDIR += dionysus
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67
math/dgl/Makefile
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67
math/dgl/Makefile
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@ -0,0 +1,67 @@
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PORTNAME= dgl
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DISTVERSION= 1.1.0
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CATEGORIES= math # machine-learning
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Deep Graph Library
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WWW= https://www.dgl.ai/
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LICENSE= APACHE20
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= ${BACKEND_DEPENDS} \
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bash:shells/bash \
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gmake:devel/gmake
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USES= cmake:testing localbase:ldflags python:build shebangfix
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USE_LDCONFIG= yes
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USE_GITHUB= yes
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GH_ACCOUNT= dmlc
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GH_TUPLE= apache:tvm:b2e418c:tvm/third_party/tvm \
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dmlc:dlpack:e2bdd3b:dlpack/third_party/dlpack \
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dmlc:dmlc-core:bfad207:dmlc_core/third_party/dmlc-core \
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greg7mdp:parallel-hashmap:25293ce:phmap/third_party/phmap \
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herumi:xbyak:757e406:xbyak/third_party/xbyak \
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imneme:pcg-cpp:428802d:pcg/third_party/pcg \
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jlblancoc:nanoflann:4c47ca2:nanoflann/third_party/nanoflann \
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KarypisLab:METIS:1060348:metis/third_party/METIS \
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KarypisLab:GKlib:62de20c:metis_GKlib/third_party/METIS/GKlib \
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pytorch:tensorpipe:6042f1a:tensorpipe/third_party/tensorpipe \
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libuv:libuv:1dff88e:tensorpipe_libuv/third_party/tensorpipe/third_party/libuv \
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google:libnop:aa95422:tensorpipe_libnop/third_party/tensorpipe/third_party/libnop \
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hfp:libxsmm:fa68755:libxsmm/third_party/libxsmm \
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NVIDIA:thrust:6a3078c:thrust/third_party/thrust \
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google:googletest:f71fb4f:googletest/third_party/googletest
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SHEBANG_GLOB= *.sh
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MAKE_ENV= PYTHON=${PYTHON_CMD}
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CMAKE_ON= BUILD_SHARED_LIBS
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CMAKE_TESTING_ON= BUILD_CPP_TEST # tests fail to compile, see https://github.com/dmlc/dgl/issues/5664
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BINARY_ALIAS= make=${GMAKE} python3=${PYTHON_CMD}
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PLIST_FILES= lib/libdgl_metis.so # workaround for https://github.com/dmlc/dgl/issues/5666
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OPTIONS_RADIO= BACKEND
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OPTIONS_RADIO_BACKEND= PYTORCH TENSORFLOW MXNET
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OPTIONS_DEFAULT= PYTORCH
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PYTORCH_DESC= Use PyTorch backend
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PYTORCH_VARS= BACKEND_DEPENDS=${PYTHON_PKGNAMEPREFIX}pytorch>0:misc/py-pytorch@${PY_FLAVOR}
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PYTORCH_MAKE_ENV= DGLBACKEND=pytorch
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TENSORFLOW_DESC= Use TensorFlow backend
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TENSORFLOW_VARS= BACKEND_DEPENDS=${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR}
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TENSORFLOW_MAKE_ENV= DGLBACKEND=tensorflow
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TENSORFLOW_CMAKE_ON= -DBUILD_SPARSE=OFF
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MXNET_DESC= Use MXNET backend
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MXNET_VARS= BACKEND_DEPENDS=${PYTHON_PKGNAMEPREFIX}mxnet>0:misc/py-mxnet@${PY_FLAVOR}
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MXNET_MAKE_ENV= DGLBACKEND=mxnet
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post-install: # workaround for https://github.com/dmlc/dgl/issues/5666
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${INSTALL_LIB} ${BUILD_WRKSRC}/third_party/METIS/libmetis/libdgl_metis.so ${STAGEDIR}${PREFIX}/lib
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.include <bsd.port.mk>
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33
math/dgl/distinfo
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33
math/dgl/distinfo
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@ -0,0 +1,33 @@
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TIMESTAMP = 1683606177
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SHA256 (dmlc-dgl-1.1.0_GH0.tar.gz) = 71c8ba7777ffdca37638bc796524d42c51006fad385967fa140235b60aac0252
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SIZE (dmlc-dgl-1.1.0_GH0.tar.gz) = 5536874
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SHA256 (apache-tvm-b2e418c_GH0.tar.gz) = f351aee38d7ad4bb1025407e26d5ed21704d1daf6cb2c2b7972ec1bef11189b7
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SIZE (apache-tvm-b2e418c_GH0.tar.gz) = 4105160
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SHA256 (dmlc-dlpack-e2bdd3b_GH0.tar.gz) = e88e702277cf4cfa4814afdbb27b07b75041d80b3df60da387cdd7e0ebeb6817
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SIZE (dmlc-dlpack-e2bdd3b_GH0.tar.gz) = 76235
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SHA256 (dmlc-dmlc-core-bfad207_GH0.tar.gz) = cb9d69eef2b73349367da53f01e54f16b0b26e0f3f063360a33c6313da494fd8
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SIZE (dmlc-dmlc-core-bfad207_GH0.tar.gz) = 256022
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SHA256 (greg7mdp-parallel-hashmap-25293ce_GH0.tar.gz) = 79bf3c49d9a685615b6876cb668c678975762e72efc95ff27afeb04d08f3e4bc
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SIZE (greg7mdp-parallel-hashmap-25293ce_GH0.tar.gz) = 1991684
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SHA256 (herumi-xbyak-757e406_GH0.tar.gz) = ce13e1474237d16e4e1f66601e52db18e66f2ba98037ca800c1d9e6068d67cf6
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SIZE (herumi-xbyak-757e406_GH0.tar.gz) = 237424
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SHA256 (imneme-pcg-cpp-428802d_GH0.tar.gz) = 94cfcaace3031f42a246ef3f01b9da04bbd51baf0a749369f085e9e25e46fdbb
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SIZE (imneme-pcg-cpp-428802d_GH0.tar.gz) = 78185
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SHA256 (jlblancoc-nanoflann-4c47ca2_GH0.tar.gz) = 84523ebbca828309da8ef35544d14c810419d6a7ecc7a6e103049bc4f2900a9e
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SIZE (jlblancoc-nanoflann-4c47ca2_GH0.tar.gz) = 685221
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SHA256 (KarypisLab-METIS-1060348_GH0.tar.gz) = 3d0b2741c650c8a01019e294a12e0bc85653d251fd6956486b7fcbc90314ab1d
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SIZE (KarypisLab-METIS-1060348_GH0.tar.gz) = 4839628
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SHA256 (KarypisLab-GKlib-62de20c_GH0.tar.gz) = b10827ec6c2481aded336dd99de1d241f5c59a65e186fdc1e6d4ee57527941aa
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SIZE (KarypisLab-GKlib-62de20c_GH0.tar.gz) = 178104
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SHA256 (pytorch-tensorpipe-6042f1a_GH0.tar.gz) = b1f269a2694d85345c90acd6d22481702e3da8c3c28c0446c5c134026edf02e8
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SIZE (pytorch-tensorpipe-6042f1a_GH0.tar.gz) = 258701
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SHA256 (libuv-libuv-1dff88e_GH0.tar.gz) = 5a1e54bf17161c2e8886f584e88078318ad9c902d9b7b1d9b0f3e682f43bee48
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SIZE (libuv-libuv-1dff88e_GH0.tar.gz) = 1281275
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SHA256 (google-libnop-aa95422_GH0.tar.gz) = a1bc9d94289868a5d40e36964d57c8e06b52cb4cfff6cc21ff259337f707d0e1
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SIZE (google-libnop-aa95422_GH0.tar.gz) = 124119
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SHA256 (hfp-libxsmm-fa68755_GH0.tar.gz) = da3ebc9e628099a3bcfa2a0c6976f0cd7e8d0eba4a85b65428167e812c367986
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SIZE (hfp-libxsmm-fa68755_GH0.tar.gz) = 5259772
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SHA256 (NVIDIA-thrust-6a3078c_GH0.tar.gz) = c4d32d275c29689c2a7bf3b33dff87d533bb0a2f606256de44cc4e3780cc9130
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SIZE (NVIDIA-thrust-6a3078c_GH0.tar.gz) = 999915
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SHA256 (google-googletest-f71fb4f_GH0.tar.gz) = 196e6d0f943c2f741665e64ed500916fe6273d4f398007c95909ffe187704391
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SIZE (google-googletest-f71fb4f_GH0.tar.gz) = 957143
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11
math/dgl/files/patch-CMakeLists.txt
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11
math/dgl/files/patch-CMakeLists.txt
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@ -0,0 +1,11 @@
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--- CMakeLists.txt.orig 2023-05-09 05:00:36 UTC
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+++ CMakeLists.txt
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@@ -197,7 +197,7 @@ if(NOT MSVC)
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include_directories(${GKLIB_PATH})
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include_directories("third_party/METIS/include/")
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add_subdirectory("third_party/METIS/libmetis/")
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- list(APPEND DGL_LINKER_LIBS metis)
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+ list(APPEND DGL_LINKER_LIBS dgl_metis)
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endif(NOT MSVC)
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# Compile LIBXSMM
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13
math/dgl/files/patch-python_dgl_backend_____init____.py
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13
math/dgl/files/patch-python_dgl_backend_____init____.py
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@ -0,0 +1,13 @@
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--- python/dgl/backend/__init__.py.orig 2023-05-08 05:34:30 UTC
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+++ python/dgl/backend/__init__.py
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@@ -115,8 +115,8 @@ def get_preferred_backend():
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"Assuming PyTorch for now.",
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file=sys.stderr,
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)
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- set_default_backend(default_dir, "pytorch")
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- return "pytorch"
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+ set_default_backend(default_dir, "tensorflow")
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+ return "tensorflow"
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load_backend(get_preferred_backend())
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10
math/dgl/files/patch-src_runtime_shared__mem.cc
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10
math/dgl/files/patch-src_runtime_shared__mem.cc
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@ -0,0 +1,10 @@
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--- src/runtime/shared_mem.cc.orig 2023-04-30 05:51:10 UTC
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+++ src/runtime/shared_mem.cc
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@@ -6,6 +6,7 @@
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#ifndef _WIN32
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#include <fcntl.h>
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#include <sys/mman.h>
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+#include <sys/stat.h>
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#include <unistd.h>
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#endif
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#include <dgl/runtime/shared_mem.h>
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@ -0,0 +1,19 @@
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--- third_party/METIS/libmetis/CMakeLists.txt.orig 2023-05-09 05:04:07 UTC
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+++ third_party/METIS/libmetis/CMakeLists.txt
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@@ -3,13 +3,13 @@ include_directories(.)
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# Find sources.
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file(GLOB metis_sources *.c)
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# Build libmetis.
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-add_library(metis ${METIS_LIBRARY_TYPE} ${GKlib_sources} ${metis_sources})
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+add_library(dgl_metis ${METIS_LIBRARY_TYPE} ${GKlib_sources} ${metis_sources})
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if(UNIX)
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- target_link_libraries(metis m)
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+ target_link_libraries(dgl_metis m)
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endif()
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if(METIS_INSTALL)
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- install(TARGETS metis
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+ install(TARGETS dgl_metis
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LIBRARY DESTINATION lib
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RUNTIME DESTINATION lib
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ARCHIVE DESTINATION lib)
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@ -0,0 +1,41 @@
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--- third_party/tensorpipe/tensorpipe/common/system.cc.orig 2021-08-31 10:11:56 UTC
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+++ third_party/tensorpipe/tensorpipe/common/system.cc
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@@ -16,6 +16,13 @@
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#include <unistd.h>
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#endif
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+#ifdef __FreeBSD__
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+#include <pthread.h>
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+#include <sys/stat.h>
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+#include <sys/types.h>
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+#include <unistd.h>
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+#endif
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+
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#ifdef __APPLE__
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#include <IOKit/IOKitLib.h>
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#endif
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@@ -141,8 +148,9 @@ std::string removeBlankSpaces(std::string s) {
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}
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optional<std::string> getBootID() {
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- static optional<std::string> bootID = getBootIDInternal();
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- return bootID;
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+ //static optional<std::string> bootID = getBootIDInternal();
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+ //return bootID;
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+ throw std::runtime_error("tensorpipe lacks FreeBSD support (getBootIDInternal), see https://github.com/pytorch/tensorpipe/issues/461");
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}
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#ifdef __APPLE__
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@@ -277,6 +285,12 @@ optional<std::string> getPermittedCapabilitiesID() {
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std::ostringstream oss;
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oss << std::hex << bitmask;
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return oss.str();
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+}
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+
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+#elif defined(__FreeBSD__)
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+
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+optional<std::string> getLinuxNamespaceId(LinuxNamespace ns) {
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+ return std::string();
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}
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#endif
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2
math/dgl/pkg-descr
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2
math/dgl/pkg-descr
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@ -0,0 +1,2 @@
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DGL is a Python package built to ease deep learning on graphs
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on top of existing DL frameworks.
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64
math/dgl/pkg-plist
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64
math/dgl/pkg-plist
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@ -0,0 +1,64 @@
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include/dmlc/any.h
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include/dmlc/array_view.h
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include/dmlc/base.h
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include/dmlc/blockingconcurrentqueue.h
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include/dmlc/build_config.h
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include/dmlc/build_config_default.h
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include/dmlc/common.h
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include/dmlc/concurrency.h
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include/dmlc/concurrentqueue.h
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include/dmlc/config.h
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include/dmlc/data.h
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include/dmlc/endian.h
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include/dmlc/filesystem.h
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include/dmlc/input_split_shuffle.h
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include/dmlc/io.h
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include/dmlc/json.h
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include/dmlc/logging.h
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include/dmlc/lua.h
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include/dmlc/memory.h
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include/dmlc/memory_io.h
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include/dmlc/omp.h
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include/dmlc/optional.h
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include/dmlc/parameter.h
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include/dmlc/recordio.h
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include/dmlc/registry.h
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include/dmlc/serializer.h
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include/dmlc/strtonum.h
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include/dmlc/thread_group.h
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include/dmlc/thread_local.h
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include/dmlc/threadediter.h
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include/dmlc/timer.h
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include/dmlc/type_traits.h
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include/tensorpipe/channel/basic/factory.h
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include/tensorpipe/channel/context.h
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include/tensorpipe/channel/error.h
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include/tensorpipe/channel/mpt/factory.h
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include/tensorpipe/channel/xth/factory.h
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include/tensorpipe/common/buffer.h
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include/tensorpipe/common/cpu_buffer.h
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include/tensorpipe/common/device.h
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include/tensorpipe/common/error.h
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include/tensorpipe/common/optional.h
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include/tensorpipe/config.h
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include/tensorpipe/core/context.h
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include/tensorpipe/core/error.h
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include/tensorpipe/core/listener.h
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include/tensorpipe/core/message.h
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include/tensorpipe/core/pipe.h
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include/tensorpipe/tensorpipe.h
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include/tensorpipe/transport/context.h
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include/tensorpipe/transport/error.h
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include/tensorpipe/transport/uv/error.h
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include/tensorpipe/transport/uv/factory.h
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include/tensorpipe/transport/uv/utility.h
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lib/cmake/dmlc/DMLCTargets-%%CMAKE_BUILD_TYPE%%.cmake
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lib/cmake/dmlc/DMLCTargets.cmake
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lib/cmake/dmlc/dmlc-config-version.cmake
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lib/cmake/dmlc/dmlc-config.cmake
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lib/libdgl.so
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lib/libdmlc.so
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lib/libtensorpipe.so
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lib/libtensorpipe_uv.a
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share/cmake/Tensorpipe/TensorpipeTargets-%%CMAKE_BUILD_TYPE%%.cmake
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share/cmake/Tensorpipe/TensorpipeTargets.cmake
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