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- Update Unipro UGENE to version 38.0

Browse source 
- Garbage-collect no longer needed patches
- Make COMMENT shorter and closer to upstream
- Stop building bundled SQLite, use ours!
This commit is contained in:
Alexey Dokuchaev 2021-03-23 14:20:49 +00:00
parent 03f562f1b1
commit 2ed87b8454
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=569026
5 changed files with 8 additions and 28 deletions
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9
biology/ugene/Makefile
View file

@ -2,11 +2,11 @@
# $FreeBSD$
PORTNAME= ugene
PORTVERSION= 37.0
PORTVERSION= 38.0
CATEGORIES= biology science
MAINTAINER= h2+fbsdports@fsfe.org
COMMENT= Free, open-source, cross-platform bioinformatics toolkit
COMMENT= Integrated bioinformatics toolkit
LICENSE= GPLv2+
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
@ -19,7 +19,7 @@ RUN_DEPENDS= bash:shells/bash
USE_GITHUB= yes
GH_ACCOUNT= ugeneunipro
USES= desktop-file-utils gl qmake qt:5 shared-mime-info xorg
USES= desktop-file-utils gl qmake qt:5 shared-mime-info sqlite xorg
USE_GL= gl glu
USE_QT= buildtools_build linguisttools_build \
core gui network opengl printsupport scripttools script \
@ -29,7 +29,8 @@ USE_XORG= x11 xtst
QMAKE_ARGS= INSTALL_PREFIX="${PREFIX}" UGENE_INSTALL_DATA="${DATADIR}" \
INSTALL_MANDIR="${MAN1PREFIX}/man" \
UGENE_LRELEASE="${LRELEASE}" UGENE_LUPDATE="${LUPDATE}"
UGENE_LRELEASE="${LRELEASE}" UGENE_LUPDATE="${LUPDATE}" \
UGENE_USE_BUNDLED_SQLITE=0
ALL_TARGET= release
CXXFLAGS_i386= -msse2

6
biology/ugene/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1607974687
SHA256 (ugeneunipro-ugene-37.0_GH0.tar.gz) = c953a1465d766168d1f753cd6757f1333baf07b5c9b60f4de798ef549e059ae4
SIZE (ugeneunipro-ugene-37.0_GH0.tar.gz) = 23379406
TIMESTAMP = 1616417068
SHA256 (ugeneunipro-ugene-38.0_GH0.tar.gz) = e0eb0ccf02e43bef4dfba707fb25b94e2d77476fcfef853ab7d7222f44fffa92
SIZE (ugeneunipro-ugene-38.0_GH0.tar.gz) = 23448730

10
biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_Overview.cpp
View file

@ -1,10 +0,0 @@
--- src/corelibs/U2View/src/ov_sequence/Overview.cpp.orig 2020-05-18 18:59:02 UTC
+++ src/corelibs/U2View/src/ov_sequence/Overview.cpp
@@ -38,6 +38,7 @@
#include <QToolTip>
#include <QVBoxLayout>
+#include <QPainterPath>
#include <U2Core/AnnotationModification.h>
#include <U2Core/AnnotationSettings.h>

10
biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_view__rendering_SequenceViewAnnotatedRenderer.cpp
View file

@ -1,10 +0,0 @@
--- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp.orig 2020-05-18 19:03:19 UTC
+++ src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp
@@ -31,6 +31,7 @@
#include <U2View/ADVSequenceObjectContext.h>
#include <U2View/SequenceObjectContext.h>
+#include <QPainterPath>
namespace U2 {

1
biology/ugene/pkg-plist
View file

@ -10,7 +10,6 @@ lib/ugene/libU2Private.so
lib/ugene/libU2Script.so
lib/ugene/libU2Test.so
lib/ugene/libU2View.so
lib/ugene/libugenedb.so
lib/ugene/plugins/CoreTests.license
lib/ugene/plugins/CoreTests.plugin
lib/ugene/plugins/GUITestBase.license