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The FASTX-Toolkit is a collection of command line tools for Short-Reads

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FASTA/FASTQ files preprocessing.

WWW: http://hannonlab.cshl.edu/fastx_toolkit/

PR:		203318
Submitted by:	Jason Bacon <jwbacon@tds.net>
This commit is contained in:
Ruslan Makhmatkhanov 2015-09-25 18:33:18 +00:00
parent 036ac0906d
commit 4d7b4d8d90
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=397847
5 changed files with 57 additions and 0 deletions
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1
biology/Makefile
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@ -20,6 +20,7 @@
SUBDIR += fasta
SUBDIR += fasta3
SUBDIR += fastdnaml
SUBDIR += fastx-toolkit
SUBDIR += fluctuate
SUBDIR += garlic
SUBDIR += gff2ps

27
biology/fastx-toolkit/Makefile Normal file
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@ -0,0 +1,27 @@
# Created by: Jason Bacon <jwbacon@tds.net>
# $FreeBSD$
PORTNAME= fastx_toolkit
PORTVERSION= 0.0.14
CATEGORIES= biology
MAINTAINER= jwbacon@tds.net
COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing
LICENSE= AGPLv3
LIB_DEPENDS= libgtextutils.so:${PORTSDIR}/biology/libgtextutils
USES= autoreconf libtool perl5 pkgconfig shebangfix tar:bzip2
USE_PERL5= run
SHEBANG_FILES= scripts/*.pl
USE_GITHUB= yes
GH_ACCOUNT= agordon
GH_PROJECT= ${PORTNAME}
GNU_CONFIGURE= yes
CONFIGURE_ENV+= PKG_CONFIG_PATH=${PREFIX}/lib/pkgconfig
.include <bsd.port.mk>

2
biology/fastx-toolkit/distinfo Normal file
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@ -0,0 +1,2 @@
SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa
SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = 259576

4
biology/fastx-toolkit/pkg-descr Normal file
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@ -0,0 +1,4 @@
The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing.
WWW: http://hannonlab.cshl.edu/fastx_toolkit/

23
biology/fastx-toolkit/pkg-plist Normal file
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@ -0,0 +1,23 @@
bin/fasta_clipping_histogram.pl
bin/fasta_formatter
bin/fasta_nucleotide_changer
bin/fastq_masker
bin/fastq_quality_boxplot_graph.sh
bin/fastq_quality_converter
bin/fastq_quality_filter
bin/fastq_quality_trimmer
bin/fastq_to_fasta
bin/fastx_artifacts_filter
bin/fastx_barcode_splitter.pl
bin/fastx_clipper
bin/fastx_collapser
bin/fastx_nucleotide_distribution_graph.sh
bin/fastx_nucleotide_distribution_line_graph.sh
bin/fastx_quality_stats
bin/fastx_renamer
bin/fastx_reverse_complement
bin/fastx_trimmer
bin/fastx_uncollapser
share/aclocal/ax_c_long_long.m4
share/aclocal/ax_cxx_compile_stdcxx_11.m4
share/aclocal/ax_cxx_header_stdcxx_tr1.m4