update biology/nab: 4.5.1 -> 4.5.2
PR: 57970 Submitted by: M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
This commit is contained in:
parent
863addc10c
commit
50e96887d2
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=91182
5 changed files with 38 additions and 20 deletions
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@ -6,7 +6,7 @@
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#
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PORTNAME= nab
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PORTVERSION= 4.5.1
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PORTVERSION= 4.5.2
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.scripps.edu/pub/case/ \
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http://www.scripps.edu/case/
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@ -15,8 +15,6 @@ MAINTAINER= bdodson@scms.utmb.edu
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COMMENT= \
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"This is nab (nucleic acid builder), a language for macromolecules"
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BROKEN= Does not fetch
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BUILD_DEPENDS= ucpp:${PORTSDIR}/devel/ucpp
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ONLY_FOR_ARCHS= i386
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@ -43,7 +41,19 @@ pre-patch:
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${WRKSRC}/cifparse/cifparse.c
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post-patch:
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@rm -f ${WRKSRC}/examples/program_7.nab.orig
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@${RM} -f ${WRKSRC}/examples/program_7.nab.orig
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@${RM} -f ${WRKSRC}/examples/program_1.c \
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${WRKSRC}/examples/program_1.exe
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@${RM} -f ${WRKSRC}/test/1ubq/a.exe
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@${RM} -f ${WRKSRC}/test/1ubq/rattle_min.c
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@${RM} -f ${WRKSRC}/test/1ubq/runleap.c
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@${RM} -f ${WRKSRC}/test/*.exe
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@${RM} -f ${WRKSRC}/tleap/utilMakeHelp.exe
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@${RM} -f ${WRKSRC}/fd_data/abdna.dat.old
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@${RM} -f ${WRKSRC}/reslib/leap/parm94.dat~
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@(cd ${WRKSRC}/reslib/leap && \
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${FIND} . -type f -print | ${GREP} -v '\./[a-zA-Z0-9]' | \
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${XARGS} ${RM} -f)
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pre-install:
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@cd ${WRKSRC}/src && \
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@ -1 +1 @@
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MD5 (nab-4.5.1.tar.gz) = 650be5581dfe5af1b7edb6da44a221d4
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MD5 (nab-4.5.2.tar.gz) = b5e9053e6ae97f36a55cc2a1317e9ba8
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@ -1,12 +1,12 @@
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--- Makefile.orig Mon Oct 23 20:33:23 2000
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+++ Makefile Wed Feb 12 16:33:42 2003
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--- Makefile.orig Tue Jul 15 21:11:15 2003
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+++ Makefile Sat Aug 9 13:50:34 2003
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@@ -1,15 +1,15 @@
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# top-level Makefile for the NAB suite of programs
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+all: compiler test
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compiler:
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-mkdir bin lib include
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- (cd ucpp-0.7; make install )
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- (cd ucpp-1.3; make install )
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(cd cifparse; make install )
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(cd src; make install )
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(cd nss; make install )
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@ -20,21 +20,18 @@
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# note: "make test" needs to follow "make", since it is very hard to
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# tell if the compiler is completely "made" or not.
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@@ -18,17 +18,14 @@
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@@ -18,14 +18,12 @@
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(cd nss; make test )
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clean:
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- (cd ucpp-0.7; make clean )
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- (cd ucpp-1.3; make clean )
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(cd cifparse; make clean )
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(cd src; make clean )
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(cd nss; make clean )
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(cd tleap; make clean )
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uninstall:
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- (cd ucpp-0.7; make uninstall )
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- (cd ucpp-1.3; make uninstall )
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(cd cifparse; make uninstall )
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(cd src; make uninstall )
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(cd nss; make uninstall )
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(cd tleap; make uninstall )
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-/bin/rm config.h
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-
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@ -1,4 +1,4 @@
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This is version 4.5 of nab (nucleic acid builder), a computer
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This is version 4.5.2 of nab (nucleic acid builder), a computer
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language that is intended for use in creating, describing and
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modifying macromolecules, especially nucleic acids. Programs
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written in nab are translated into C, which in turn is compiled
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@ -78,7 +78,6 @@ share/nab/examples/rna_pseudoknot.pdb
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share/nab/examples/test.pdb
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share/nab/examples/test.sup.pdb
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share/nab/fd_data/abdna.dat
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share/nab/fd_data/abdna.dat.old
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share/nab/fd_data/adna.dat
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share/nab/fd_data/aprna.dat
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share/nab/fd_data/arna.dat
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@ -171,6 +170,7 @@ share/nab/reslib/leap/dna.amberua.lib
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share/nab/reslib/leap/dna.amberua.redch.lib
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share/nab/reslib/leap/ions91.lib
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share/nab/reslib/leap/ions94.lib
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share/nab/reslib/leap/parm94.dat.istvan
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share/nab/reslib/leap/leap.log
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share/nab/reslib/leap/leaprc.dna.amberua
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share/nab/reslib/leap/leaprc.dna.amberua.redch
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@ -270,13 +270,11 @@ share/nab/test/2.pdb
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share/nab/test/5pti.obs
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share/nab/test/5pti.pdb
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share/nab/test/5pti.shifts.check
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share/nab/test/a.exe
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share/nab/test/d01.lin.check
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share/nab/test/d01.pdb.check
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share/nab/test/dg_gyrate.nab
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share/nab/test/dg_gyrate.out.check
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share/nab/test/dna.circle.nab
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share/nab/test/duplex.exe
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share/nab/test/duplex.in
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share/nab/test/duplex.nab
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share/nab/test/fd.nab
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@ -285,9 +283,8 @@ share/nab/test/gbrna.nab
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share/nab/test/gbrna.out.check
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share/nab/test/gbrna.pdb
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share/nab/test/gbrna.prmtop
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share/nab/test/gbrna_long.exe
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share/nab/test/gbrna_long.nab
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share/nab/test/gbrna_long.out
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share/nab/test/gbrna_sa.nab
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share/nab/test/gbtrx.nab
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share/nab/test/gbtrx.out.check
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share/nab/test/get_pep_info.nab
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@ -301,9 +298,11 @@ share/nab/test/ico.sym
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share/nab/test/ico.sym.out.check
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share/nab/test/ltest.nab
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share/nab/test/ltest.out.check
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share/nab/test/msurf.nab
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share/nab/test/pointplane.nab
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share/nab/test/prmtop
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share/nab/test/prmtop.gb2
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share/nab/test/prmtop.new
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share/nab/test/rattle_md.nab
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share/nab/test/rattle_md.out.check
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share/nab/test/rattle_min.nab
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@ -322,6 +321,18 @@ share/nab/test/tbv.com.pdb
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share/nab/test/trxox.2.4ns.pdb
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share/nab/test/trxox.2.4ns.x
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share/nab/test/write_sander_inp.nab
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share/nab/test/lCmd
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share/nab/test/1ubq/1ubq.pdb
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share/nab/test/1ubq/5pti.pdb
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share/nab/test/1ubq/leap.log
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share/nab/test/1ubq/out.1
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share/nab/test/1ubq/prmtop
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share/nab/test/1ubq/prmtop.1
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share/nab/test/1ubq/rattle_min.nab
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share/nab/test/1ubq/runleap.nab
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share/nab/test/2strand.nab
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share/nab/test/2strand.pdb
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@dirrm share/nab/test/1ubq
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@dirrm share/nab/test
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@dirrm share/nab/suppose
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@dirrm share/nab/reslib/rna.amberua
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