update biology/nab: 4.5.1 -> 4.5.2

PR:		57970
Submitted by:	M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
This commit is contained in:
Daichi GOTO 2003-10-14 12:18:51 +00:00
parent 863addc10c
commit 50e96887d2
Notes: svn2git 2021-03-31 03:12:20 +00:00
svn path=/head/; revision=91182
5 changed files with 38 additions and 20 deletions

View file

@ -6,7 +6,7 @@
#
PORTNAME= nab
PORTVERSION= 4.5.1
PORTVERSION= 4.5.2
CATEGORIES= biology
MASTER_SITES= ftp://ftp.scripps.edu/pub/case/ \
http://www.scripps.edu/case/
@ -15,8 +15,6 @@ MAINTAINER= bdodson@scms.utmb.edu
COMMENT= \
"This is nab (nucleic acid builder), a language for macromolecules"
BROKEN= Does not fetch
BUILD_DEPENDS= ucpp:${PORTSDIR}/devel/ucpp
ONLY_FOR_ARCHS= i386
@ -43,7 +41,19 @@ pre-patch:
${WRKSRC}/cifparse/cifparse.c
post-patch:
@rm -f ${WRKSRC}/examples/program_7.nab.orig
@${RM} -f ${WRKSRC}/examples/program_7.nab.orig
@${RM} -f ${WRKSRC}/examples/program_1.c \
${WRKSRC}/examples/program_1.exe
@${RM} -f ${WRKSRC}/test/1ubq/a.exe
@${RM} -f ${WRKSRC}/test/1ubq/rattle_min.c
@${RM} -f ${WRKSRC}/test/1ubq/runleap.c
@${RM} -f ${WRKSRC}/test/*.exe
@${RM} -f ${WRKSRC}/tleap/utilMakeHelp.exe
@${RM} -f ${WRKSRC}/fd_data/abdna.dat.old
@${RM} -f ${WRKSRC}/reslib/leap/parm94.dat~
@(cd ${WRKSRC}/reslib/leap && \
${FIND} . -type f -print | ${GREP} -v '\./[a-zA-Z0-9]' | \
${XARGS} ${RM} -f)
pre-install:
@cd ${WRKSRC}/src && \

View file

@ -1 +1 @@
MD5 (nab-4.5.1.tar.gz) = 650be5581dfe5af1b7edb6da44a221d4
MD5 (nab-4.5.2.tar.gz) = b5e9053e6ae97f36a55cc2a1317e9ba8

View file

@ -1,12 +1,12 @@
--- Makefile.orig Mon Oct 23 20:33:23 2000
+++ Makefile Wed Feb 12 16:33:42 2003
--- Makefile.orig Tue Jul 15 21:11:15 2003
+++ Makefile Sat Aug 9 13:50:34 2003
@@ -1,15 +1,15 @@
# top-level Makefile for the NAB suite of programs
+all: compiler test
compiler:
-mkdir bin lib include
- (cd ucpp-0.7; make install )
- (cd ucpp-1.3; make install )
(cd cifparse; make install )
(cd src; make install )
(cd nss; make install )
@ -20,21 +20,18 @@
# note: "make test" needs to follow "make", since it is very hard to
# tell if the compiler is completely "made" or not.
@@ -18,17 +18,14 @@
@@ -18,14 +18,12 @@
(cd nss; make test )
clean:
- (cd ucpp-0.7; make clean )
- (cd ucpp-1.3; make clean )
(cd cifparse; make clean )
(cd src; make clean )
(cd nss; make clean )
(cd tleap; make clean )
uninstall:
- (cd ucpp-0.7; make uninstall )
- (cd ucpp-1.3; make uninstall )
(cd cifparse; make uninstall )
(cd src; make uninstall )
(cd nss; make uninstall )
(cd tleap; make uninstall )
-/bin/rm config.h
-

View file

@ -1,4 +1,4 @@
This is version 4.5 of nab (nucleic acid builder), a computer
This is version 4.5.2 of nab (nucleic acid builder), a computer
language that is intended for use in creating, describing and
modifying macromolecules, especially nucleic acids. Programs
written in nab are translated into C, which in turn is compiled

View file

@ -78,7 +78,6 @@ share/nab/examples/rna_pseudoknot.pdb
share/nab/examples/test.pdb
share/nab/examples/test.sup.pdb
share/nab/fd_data/abdna.dat
share/nab/fd_data/abdna.dat.old
share/nab/fd_data/adna.dat
share/nab/fd_data/aprna.dat
share/nab/fd_data/arna.dat
@ -171,6 +170,7 @@ share/nab/reslib/leap/dna.amberua.lib
share/nab/reslib/leap/dna.amberua.redch.lib
share/nab/reslib/leap/ions91.lib
share/nab/reslib/leap/ions94.lib
share/nab/reslib/leap/parm94.dat.istvan
share/nab/reslib/leap/leap.log
share/nab/reslib/leap/leaprc.dna.amberua
share/nab/reslib/leap/leaprc.dna.amberua.redch
@ -270,13 +270,11 @@ share/nab/test/2.pdb
share/nab/test/5pti.obs
share/nab/test/5pti.pdb
share/nab/test/5pti.shifts.check
share/nab/test/a.exe
share/nab/test/d01.lin.check
share/nab/test/d01.pdb.check
share/nab/test/dg_gyrate.nab
share/nab/test/dg_gyrate.out.check
share/nab/test/dna.circle.nab
share/nab/test/duplex.exe
share/nab/test/duplex.in
share/nab/test/duplex.nab
share/nab/test/fd.nab
@ -285,9 +283,8 @@ share/nab/test/gbrna.nab
share/nab/test/gbrna.out.check
share/nab/test/gbrna.pdb
share/nab/test/gbrna.prmtop
share/nab/test/gbrna_long.exe
share/nab/test/gbrna_long.nab
share/nab/test/gbrna_long.out
share/nab/test/gbrna_sa.nab
share/nab/test/gbtrx.nab
share/nab/test/gbtrx.out.check
share/nab/test/get_pep_info.nab
@ -301,9 +298,11 @@ share/nab/test/ico.sym
share/nab/test/ico.sym.out.check
share/nab/test/ltest.nab
share/nab/test/ltest.out.check
share/nab/test/msurf.nab
share/nab/test/pointplane.nab
share/nab/test/prmtop
share/nab/test/prmtop.gb2
share/nab/test/prmtop.new
share/nab/test/rattle_md.nab
share/nab/test/rattle_md.out.check
share/nab/test/rattle_min.nab
@ -322,6 +321,18 @@ share/nab/test/tbv.com.pdb
share/nab/test/trxox.2.4ns.pdb
share/nab/test/trxox.2.4ns.x
share/nab/test/write_sander_inp.nab
share/nab/test/lCmd
share/nab/test/1ubq/1ubq.pdb
share/nab/test/1ubq/5pti.pdb
share/nab/test/1ubq/leap.log
share/nab/test/1ubq/out.1
share/nab/test/1ubq/prmtop
share/nab/test/1ubq/prmtop.1
share/nab/test/1ubq/rattle_min.nab
share/nab/test/1ubq/runleap.nab
share/nab/test/2strand.nab
share/nab/test/2strand.pdb
@dirrm share/nab/test/1ubq
@dirrm share/nab/test
@dirrm share/nab/suppose
@dirrm share/nab/reslib/rna.amberua