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biology/minimap2: Update to 2.25

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New feature to output sequences in secondary alignments
Several minor enhancements and fixes
Changes: https://github.com/lh3/minimap2/releases

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2023-04-29 09:51:07 -05:00
parent 9356d832e6
commit 57d280a35e
3 changed files with 4 additions and 10 deletions
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2
biology/minimap2/Makefile
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@ -1,6 +1,6 @@
PORTNAME= minimap2
DISTVERSIONPREFIX= v
DISTVERSION= 2.24
DISTVERSION= 2.25
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

6
biology/minimap2/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1640960772
SHA256 (lh3-minimap2-v2.24_GH0.tar.gz) = 2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc
SIZE (lh3-minimap2-v2.24_GH0.tar.gz) = 253050
TIMESTAMP = 1682729894
SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38
SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574

6
biology/minimap2/pkg-descr
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@ -1,16 +1,10 @@
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA
sequences against a large reference database. Typical use cases include:
(1) mapping PacBio or Oxford Nanopore genomic reads to the human genome
(2) finding overlaps between long reads with error rate up to ~15%
(3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA
readsagainst a reference genome
(4) aligning Illumina single- or paired-end reads
(5) assembly-to-assembly alignment
(6) full-genome alignment between two closely related species with divergence
below ~15%