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update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust

Browse source 
dependent ports

Approved by:	linimon (portmgr), thierry, tota, wen
Feature safe:	yes
This commit is contained in:
Brendan Fabeny 2011-11-27 07:02:15 +00:00
parent 0a0a56c4fe
commit 5d57d97db9
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=286477
62 changed files with 294 additions and 185 deletions
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2
astro/R-cran-maptools/Makefile
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@ -7,7 +7,7 @@
PORTNAME= maptools
DISTVERSION= 0.8-10
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= astro
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
converters/R-cran-RJSONIO/Makefile
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@ -7,6 +7,7 @@
PORTNAME= RJSONIO
DISTVERSION= 0.96-0
PORTREVISION= 1
CATEGORIES= converters
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
databases/R-cran-DBI/Makefile
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@ -7,7 +7,7 @@
PORTNAME= DBI
DISTVERSION= 0.2-5
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
databases/R-cran-RMySQL/Makefile
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@ -7,7 +7,7 @@
PORTNAME= RMySQL
DISTVERSION= 0.8-0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
devel/R-cran-bitops/Makefile
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@ -7,7 +7,7 @@
PORTNAME= bitops
DISTVERSION= 1.0-4.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
devel/R-cran-caret/Makefile
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@ -7,6 +7,7 @@
PORTNAME= caret
DISTVERSION= 5.08-011
PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
devel/R-cran-foreach/Makefile
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@ -7,7 +7,7 @@
PORTNAME= foreach
PORTVERSION= 1.3.2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
devel/R-cran-iterators/Makefile
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@ -7,7 +7,7 @@
PORTNAME= iterators
PORTVERSION= 1.0.5
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
devel/R-cran-itertools/Makefile
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@ -7,7 +7,7 @@
PORTNAME= itertools
DISTVERSION= 0.1-1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
devel/R-cran-plyr/Makefile
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@ -7,7 +7,7 @@
PORTNAME= plyr
PORTVERSION= 1.6
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
devel/R-cran-proto/Makefile
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@ -7,7 +7,7 @@
PORTNAME= proto
DISTVERSION= 0.3-9.2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
devel/R-cran-reshape/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= reshape
PORTVERSION= 0.8.4
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
finance/R-cran-RFinanceYJ/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= RFinanceYJ
PORTVERSION= 0.1.6
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
finance/R-cran-gmm/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= gmm
DISTVERSION= 1.3-8
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
ftp/R-cran-RCurl/Makefile
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@ -7,6 +7,7 @@
PORTNAME= RCurl
DISTVERSION= 1.7-0
PORTREVISION= 1
CATEGORIES= ftp
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
graphics/R-cran-RColorBrewer/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= RColorBrewer
DISTVERSION= 1.0-5
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
graphics/R-cran-colorspace/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= colorspace
DISTVERSION= 1.1-0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
graphics/R-cran-diagram/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= diagram
PORTVERSION= 1.5.2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
graphics/R-cran-ggplot2/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= ggplot2
PORTVERSION= 0.8.9
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
graphics/R-cran-shape/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= shape
PORTVERSION= 1.3.4
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
math/R-cran-RSvgDevice/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= RSvgDevice
PORTVERSION= 0.6.4.1
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
math/R-cran-SuppDists/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= SuppDists
DISTVERSION= 1.1-8
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= ${MASTER_CRAN_SITES} \
http://r.research.att.com/benchmarks/:benchmark \

1
math/R-cran-Zelig/Makefile
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@ -7,6 +7,7 @@
PORTNAME= Zelig
DISTVERSION= 3.5.3
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
math/R-cran-car/Makefile
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@ -7,6 +7,7 @@
PORTNAME= car
DISTVERSION= 2.0-11
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
math/R-cran-coda/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= coda
DISTVERSION= 0.14-6
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
math/R-cran-deldir/Makefile
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@ -7,6 +7,7 @@
PORTNAME= deldir
DISTVERSION= 0.0-16
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
math/R-cran-gpclib/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= gpclib
DISTVERSION= 1.5-1
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
math/R-cran-inline/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= inline
PORTVERSION= 0.3.8
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
math/R-cran-mvtnorm/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= mvtnorm
PORTVERSION= 0.9.96
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}

2
math/R-cran-psych/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= psych
PORTVERSION= 1.0.94
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}

2
math/R-cran-sandwich/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= sandwich
DISTVERSION= 2.2-8
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
math/R-cran-sm/Makefile
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@ -7,7 +7,7 @@
PORTNAME= sm
DISTVERSION= 2.2-4.1
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

7
math/R-cran-sp/Makefile
View file

@ -6,15 +6,14 @@
#
PORTNAME= sp
PORTVERSION= 0.9.78
PORTREVISION= 3
DISTVERSION= 0.9-91
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
DISTNAME= ${PORTNAME}_${DISTVERSION}
MAINTAINER= wen@FreeBSD.org
COMMENT= R Classes and Methods for Spatial Data
USE_R_MOD= yes
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
.include <bsd.port.mk>

4
math/R-cran-sp/distinfo
View file

@ -1,2 +1,2 @@
SHA256 (sp_0.9-78.tar.gz) = 9f805a5ae0acec9d449b65b62e8a496b7ac22f645918f5139e566b529eb5f549
SIZE (sp_0.9-78.tar.gz) = 717610
SHA256 (sp_0.9-91.tar.gz) = b4615518e726785fec237eb314a56491c671f2ae0121fca8ae9bc1ed7c224297
SIZE (sp_0.9-91.tar.gz) = 596365

1
math/R-cran-spdep/Makefile
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@ -7,6 +7,7 @@
PORTNAME= spdep
DISTVERSION= 0.5-41
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
math/R-cran-xts/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= xts
DISTVERSION= 0.8-2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
math/R-cran-zoo/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= zoo
DISTVERSION= 1.7-6
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

32
math/R/Makefile
View file

@ -7,7 +7,7 @@
#
PORTNAME?= R
PORTVERSION= 2.13.2
PORTVERSION= 2.14.0
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@ -47,7 +47,7 @@ CONFIGURE_ENV= FCFLAGS="${FFLAGS}" \
INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \
R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" TAR="${TAR}"
OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
ICU "Improve collation in multibyte locales with ICU" on \
ICU "Use ICU for collation in multibyte locales" on \
NLS "Build with NLS support" on \
PCRE_PORT "Use PCRE port instead of bundled source" on \
THREADS "Build a multithreaded R" on
@ -55,13 +55,13 @@ OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
OPTIONS+= GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \
JPEG "Enable the jpeg() graphics device" on \
LETTER_PAPER "Use US Letter paper" off \
LIBR "Install libR, and a dynamically-linked, rather than a static R" on \
PANGOCAIRO "Enable cairo and pango in the X11() graphics device" on \
LIBR "Install libR and a dynamically-linked R" on \
PANGOCAIRO "Enable cairo and pango in graphics devices" on \
PNG "Enable the png() graphics device" on \
TCLTK "Use Tcl/Tk (for the tcltk package)" on \
X11 "Enable the X11() graphics device" on \
DVI_MANUALS "Install DVI manuals (requires TeX)" off \
INFO_MANUALS "Install GNU info manuals" on
INFO_MANUALS "Install GNU info manuals" on \
PDF_MANUALS "Install PDF manuals (requires TeX)" off
.endif # !LIBR_SLAVEPORT
PLIST_SUB= R_SOVERSION="${R_SOVERSION}" \
RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
@ -207,19 +207,25 @@ ALL_TARGET+= info
INFO= R-FAQ R-admin R-data R-exts R-intro R-lang
.endif
.if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS)
BUILD_DEPENDS += texi2dvi:${PORTSDIR}/print/texinfo \
tex:${PORTSDIR}/print/teTeX-base
ALL_TARGET+= dvi
INSTALL_TARGET+= install-dvi
PLIST_SUB+= DVI_MANUAL=""
.if defined(WITH_PDF_MANUALS) && !defined(NOPORTDOCS)
BUILD_DEPENDS += pdftex:${PORTSDIR}/print/teTeX-base \
texi2dvi:${PORTSDIR}/print/texinfo
ALL_TARGET+= pdf
INSTALL_TARGET+= install-pdf
PLIST_SUB+= PDF_MANUAL=""
.else
PLIST_SUB+= DVI_MANUAL="@comment "
PLIST_SUB+= PDF_MANUAL="@comment "
.endif
.endif # LIBR_SLAVEPORT
.endif # !LIBRMATH_SLAVEPORT
post-patch:
@${REINPLACE_CMD} -e '\|R_RD4PDF|s|,inconsolata||' \
${WRKSRC}/configure \
${WRKSRC}/src/library/tools/R/Rd2dvi.R \
${WRKSRC}/src/library/utils/R/help.R
@${REINPLACE_CMD} -e '\|LIBS=|s|-lrt ||' \
${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \
${WRKSRC}/src/nmath/standalone/Makefile.in \
${WRKSRC}/src/unix/Makefile.in

4
math/R/distinfo
View file

@ -1,2 +1,2 @@
SHA256 (R-2.13.2.tar.gz) = a1c8733030636c86efa23f6f22dd673a0a54d0fedcffcc8c8deb03da8f972330
SIZE (R-2.13.2.tar.gz) = 22161810
SHA256 (R-2.14.0.tar.gz) = 036204f56f8128e633a5d2fe56ebe0ba5a5e8501abe2056736d12a99bf69b910
SIZE (R-2.14.0.tar.gz) = 22675106

33
math/R/files/patch-doc__manual__refman.top Normal file
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@ -0,0 +1,33 @@
--- doc/manual/refman.top.orig 2011-11-23 12:21:46.000000000 -0500
+++ doc/manual/refman.top 2011-11-23 12:22:31.000000000 -0500
@@ -4,18 +4,18 @@
%% Set PDF 1.5 and compression, including object compression
%% Needed for MiKTeX -- most other distributions default to this
-\ifx\pdfoutput\undefined
-\else
- \ifx\pdfoutput\relax
- \else
- \ifnum\pdfoutput>0
- % PDF output
- \pdfminorversion=5
- \pdfcompresslevel=9
- \pdfobjcompresslevel=2
- \fi
- \fi
-\fi
+%%\ifx\pdfoutput\undefined
+%%\else
+%% \ifx\pdfoutput\relax
+%% \else
+%% \ifnum\pdfoutput>0
+%% % PDF output
+%% \pdfminorversion=5
+%% \pdfcompresslevel=9
+%% \pdfobjcompresslevel=2
+%% \fi
+%% \fi
+%%\fi
\makeatletter
\renewcommand\@pnumwidth{2.05em} % over 1000 pages

302
math/R/pkg-plist
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@ -177,6 +177,8 @@ lib/R/library/Matrix/Copyrights
lib/R/library/Matrix/DESCRIPTION
lib/R/library/Matrix/Doxyfile
lib/R/library/Matrix/INDEX
lib/R/library/Matrix/test-tools-1.R
lib/R/library/Matrix/test-tools-Matrix.R
lib/R/library/Matrix/Meta/Rd.rds
lib/R/library/Matrix/Meta/data.rds
lib/R/library/Matrix/Meta/hsearch.rds
@ -354,6 +356,8 @@ lib/R/library/cluster/help/paths.rds
lib/R/library/cluster/html/00Index.html
lib/R/library/cluster/html/R.css
lib/R/library/cluster/libs/cluster.so
%%NLS%%lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo
%%NLS%%lib/R/library/cluster/po/en@quot/LC_MESSAGES/R-cluster.mo
lib/R/library/codetools/DESCRIPTION
lib/R/library/codetools/INDEX
lib/R/library/codetools/Meta/Rd.rds
@ -396,15 +400,15 @@ lib/R/library/compiler/html/R.css
%%NLS%%lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
%%NLS%%lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
%%NLS%%lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
%%NLS%%lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo
lib/R/library/datasets/DESCRIPTION
lib/R/library/datasets/INDEX
lib/R/library/datasets/NAMESPACE
lib/R/library/datasets/Meta/Rd.rds
lib/R/library/datasets/Meta/data.rds
lib/R/library/datasets/Meta/hsearch.rds
lib/R/library/datasets/Meta/links.rds
lib/R/library/datasets/Meta/nsInfo.rds
lib/R/library/datasets/Meta/package.rds
lib/R/library/datasets/R/datasets
lib/R/library/datasets/data/Rdata.rdb
lib/R/library/datasets/data/Rdata.rds
lib/R/library/datasets/data/Rdata.rdx
@ -456,95 +460,95 @@ lib/R/library/grDevices/NAMESPACE
lib/R/library/grDevices/R/grDevices
lib/R/library/grDevices/R/grDevices.rdb
lib/R/library/grDevices/R/grDevices.rdx
lib/R/library/grDevices/afm/CM_boldx_10.afm
lib/R/library/grDevices/afm/CM_boldx_italic_10.afm
lib/R/library/grDevices/afm/CM_italic_10.afm
lib/R/library/grDevices/afm/CM_regular_10.afm
lib/R/library/grDevices/afm/CM_symbol_10.afm
lib/R/library/grDevices/afm/Courier-BoldOblique.afm
lib/R/library/grDevices/afm/Courier-Bold.afm
lib/R/library/grDevices/afm/Courier-Oblique.afm
lib/R/library/grDevices/afm/Courier.afm
lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm
lib/R/library/grDevices/afm/Helvetica-Bold.afm
lib/R/library/grDevices/afm/Helvetica-Oblique.afm
lib/R/library/grDevices/afm/Helvetica.afm
lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
lib/R/library/grDevices/afm/CM_italic_10.afm.gz
lib/R/library/grDevices/afm/CM_regular_10.afm.gz
lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz
lib/R/library/grDevices/afm/Courier-Bold.afm.gz
lib/R/library/grDevices/afm/Courier-Oblique.afm.gz
lib/R/library/grDevices/afm/Courier.afm.gz
lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz
lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
lib/R/library/grDevices/afm/Helvetica.afm.gz
lib/R/library/grDevices/afm/MustRead.html
lib/R/library/grDevices/afm/README
lib/R/library/grDevices/afm/Symbol.afm
lib/R/library/grDevices/afm/Times-BoldItalic.afm
lib/R/library/grDevices/afm/Times-Bold.afm
lib/R/library/grDevices/afm/Times-Italic.afm
lib/R/library/grDevices/afm/Times-Roman.afm
lib/R/library/grDevices/afm/ZapfDingbats.afm
lib/R/library/grDevices/afm/a010013l.afm
lib/R/library/grDevices/afm/a010015l.afm
lib/R/library/grDevices/afm/a010033l.afm
lib/R/library/grDevices/afm/a010035l.afm
lib/R/library/grDevices/afm/agd_____.afm
lib/R/library/grDevices/afm/agdo____.afm
lib/R/library/grDevices/afm/agw_____.afm
lib/R/library/grDevices/afm/agwo____.afm
lib/R/library/grDevices/afm/b018012l.afm
lib/R/library/grDevices/afm/b018015l.afm
lib/R/library/grDevices/afm/b018032l.afm
lib/R/library/grDevices/afm/b018035l.afm
lib/R/library/grDevices/afm/bkd_____.afm
lib/R/library/grDevices/afm/bkdi____.afm
lib/R/library/grDevices/afm/bkl_____.afm
lib/R/library/grDevices/afm/bkli____.afm
lib/R/library/grDevices/afm/c059013l.afm
lib/R/library/grDevices/afm/c059016l.afm
lib/R/library/grDevices/afm/c059033l.afm
lib/R/library/grDevices/afm/c059036l.afm
lib/R/library/grDevices/afm/cmbxti10.afm
lib/R/library/grDevices/afm/cmti10.afm
lib/R/library/grDevices/afm/cob_____.afm
lib/R/library/grDevices/afm/cobo____.afm
lib/R/library/grDevices/afm/com_____.afm
lib/R/library/grDevices/afm/coo_____.afm
lib/R/library/grDevices/afm/hv______.afm
lib/R/library/grDevices/afm/hvb_____.afm
lib/R/library/grDevices/afm/hvbo____.afm
lib/R/library/grDevices/afm/hvn_____.afm
lib/R/library/grDevices/afm/hvnb____.afm
lib/R/library/grDevices/afm/hvnbo___.afm
lib/R/library/grDevices/afm/hvno____.afm
lib/R/library/grDevices/afm/hvo_____.afm
lib/R/library/grDevices/afm/n019003l.afm
lib/R/library/grDevices/afm/n019004l.afm
lib/R/library/grDevices/afm/n019023l.afm
lib/R/library/grDevices/afm/n019024l.afm
lib/R/library/grDevices/afm/n019043l.afm
lib/R/library/grDevices/afm/n019044l.afm
lib/R/library/grDevices/afm/n019063l.afm
lib/R/library/grDevices/afm/n019064l.afm
lib/R/library/grDevices/afm/n021003l.afm
lib/R/library/grDevices/afm/n021004l.afm
lib/R/library/grDevices/afm/n021023l.afm
lib/R/library/grDevices/afm/n021024l.afm
lib/R/library/grDevices/afm/n022003l.afm
lib/R/library/grDevices/afm/n022004l.afm
lib/R/library/grDevices/afm/n022023l.afm
lib/R/library/grDevices/afm/n022024l.afm
lib/R/library/grDevices/afm/ncb_____.afm
lib/R/library/grDevices/afm/ncbi____.afm
lib/R/library/grDevices/afm/nci_____.afm
lib/R/library/grDevices/afm/ncr_____.afm
lib/R/library/grDevices/afm/p052003l.afm
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lib/R/library/grDevices/enc/AdobeStd.enc
lib/R/library/grDevices/enc/AdobeSym.enc
lib/R/library/grDevices/enc/CP1250.enc
@ -571,6 +575,8 @@ lib/R/library/grDevices/help/paths.rds
lib/R/library/grDevices/html/00Index.html
lib/R/library/grDevices/html/R.css
lib/R/library/grDevices/icc/srgb
lib/R/library/grDevices/icc/srgb.flate
lib/R/library/grDevices/libs/cairo.so
lib/R/library/grDevices/libs/grDevices.so
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo
@ -615,6 +621,13 @@ lib/R/library/graphics/help/aliases.rds
lib/R/library/graphics/help/graphics.rdb
lib/R/library/graphics/help/graphics.rdx
lib/R/library/graphics/help/paths.rds
lib/R/library/graphics/help/figures/mai.pdf
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lib/R/library/graphics/help/figures/oma.pdf
lib/R/library/graphics/help/figures/oma.png
lib/R/library/graphics/help/figures/pch.pdf
lib/R/library/graphics/help/figures/pch.png
lib/R/library/graphics/help/figures/pch.svg
lib/R/library/graphics/html/00Index.html
lib/R/library/graphics/html/R.css
%%NLS%%lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
@ -640,45 +653,44 @@ lib/R/library/grid/R/grid.rdb
lib/R/library/grid/R/grid.rdx
lib/R/library/grid/doc/changes.txt
lib/R/library/grid/doc/displaylist.R
lib/R/library/grid/doc/displaylist.Snw
lib/R/library/grid/doc/displaylist.Rnw
lib/R/library/grid/doc/displaylist.pdf
lib/R/library/grid/doc/frame.R
lib/R/library/grid/doc/frame.Snw
lib/R/library/grid/doc/frame.Rnw
lib/R/library/grid/doc/frame.pdf
lib/R/library/grid/doc/grid.R
lib/R/library/grid/doc/grid.Snw
lib/R/library/grid/doc/grid.bib
lib/R/library/grid/doc/grid.Rnw
lib/R/library/grid/doc/grid.pdf
lib/R/library/grid/doc/grobs.R
lib/R/library/grid/doc/grobs.Snw
lib/R/library/grid/doc/grobs.Rnw
lib/R/library/grid/doc/grobs.pdf
lib/R/library/grid/doc/index.html
lib/R/library/grid/doc/interactive.R
lib/R/library/grid/doc/interactive.Snw
lib/R/library/grid/doc/interactive.Rnw
lib/R/library/grid/doc/interactive.pdf
lib/R/library/grid/doc/locndimn.R
lib/R/library/grid/doc/locndimn.Snw
lib/R/library/grid/doc/locndimn.Rnw
lib/R/library/grid/doc/locndimn.pdf
lib/R/library/grid/doc/moveline.R
lib/R/library/grid/doc/moveline.Snw
lib/R/library/grid/doc/moveline.Rnw
lib/R/library/grid/doc/moveline.pdf
lib/R/library/grid/doc/nonfinite.R
lib/R/library/grid/doc/nonfinite.Snw
lib/R/library/grid/doc/nonfinite.Rnw
lib/R/library/grid/doc/nonfinite.pdf
lib/R/library/grid/doc/plotexample.R
lib/R/library/grid/doc/plotexample.Snw
lib/R/library/grid/doc/plotexample.Rnw
lib/R/library/grid/doc/plotexample.pdf
lib/R/library/grid/doc/rotated.R
lib/R/library/grid/doc/rotated.Snw
lib/R/library/grid/doc/rotated.Rnw
lib/R/library/grid/doc/rotated.pdf
lib/R/library/grid/doc/saveload.R
lib/R/library/grid/doc/saveload.Snw
lib/R/library/grid/doc/saveload.Rnw
lib/R/library/grid/doc/saveload.pdf
lib/R/library/grid/doc/sharing.R
lib/R/library/grid/doc/sharing.Snw
lib/R/library/grid/doc/sharing.Rnw
lib/R/library/grid/doc/sharing.pdf
lib/R/library/grid/doc/viewports.R
lib/R/library/grid/doc/viewports.Snw
lib/R/library/grid/doc/viewports.Rnw
lib/R/library/grid/doc/viewports.pdf
lib/R/library/grid/help/AnIndex
lib/R/library/grid/help/aliases.rds
@ -863,6 +875,38 @@ lib/R/library/nnet/libs/nnet.so
%%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo
%%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
%%NLS%%lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo
lib/R/library/parallel/DESCRIPTION
lib/R/library/parallel/INDEX
lib/R/library/parallel/Meta/Rd.rds
lib/R/library/parallel/Meta/hsearch.rds
lib/R/library/parallel/Meta/links.rds
lib/R/library/parallel/Meta/nsInfo.rds
lib/R/library/parallel/Meta/package.rds
lib/R/library/parallel/Meta/vignette.rds
lib/R/library/parallel/NAMESPACE
lib/R/library/parallel/R/parallel
lib/R/library/parallel/R/parallel.rdb
lib/R/library/parallel/R/parallel.rdx
lib/R/library/parallel/doc/index.html
lib/R/library/parallel/doc/parallel.R
lib/R/library/parallel/doc/parallel.Rnw
lib/R/library/parallel/doc/parallel.pdf
lib/R/library/parallel/help/AnIndex
lib/R/library/parallel/help/aliases.rds
lib/R/library/parallel/help/parallel.rdb
lib/R/library/parallel/help/parallel.rdx
lib/R/library/parallel/help/paths.rds
lib/R/library/parallel/html/00Index.html
lib/R/library/parallel/html/R.css
lib/R/library/parallel/libs/parallel.so
%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/R-parallel.mo
%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/parallel.mo
%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/R-parallel.mo
%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/parallel.mo
%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/R-parallel.mo
%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/parallel.mo
%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/R-parallel.mo
%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/parallel.mo
lib/R/library/rpart/DESCRIPTION
lib/R/library/rpart/INDEX
lib/R/library/rpart/Meta/Rd.rds
@ -1052,7 +1096,6 @@ lib/R/library/stats/libs/stats.so
%%NLS%%lib/R/library/stats/po/tr/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
lib/R/library/survival/COPYING
lib/R/library/survival/DESCRIPTION
lib/R/library/survival/INDEX
lib/R/library/survival/Meta/Rd.rds
@ -1221,10 +1264,10 @@ lib/R/share/R/REMOVE.R
lib/R/share/R/examples-footer.R
lib/R/share/R/examples-header.R
lib/R/share/R/nspackloader.R
lib/R/share/R/packloader.R
lib/R/share/R/tests-startup.R
lib/R/share/encodings/Adobe-glyphlist
lib/R/share/encodings/character-sets
lib/R/share/java/README
lib/R/share/java/getsp.class
lib/R/share/licenses/AGPL-3
lib/R/share/licenses/Artistic-1.0
@ -1254,6 +1297,7 @@ lib/R/share/make/basepkg.mk
lib/R/share/make/check.mk
lib/R/share/make/clean.mk
lib/R/share/make/config.mk
lib/R/share/make/lazycomp.mk
lib/R/share/make/shlib.mk
lib/R/share/make/vars.mk
lib/R/share/make/winshlib.mk
@ -1271,27 +1315,21 @@ lib/R/share/texmf/tex/latex/ts1aer.fd
lib/R/share/texmf/tex/latex/ts1aett.fd
lib/R/share/texmf/tex/latex/upquote.sty
%%LIBR%%libdata/pkgconfig/libR.pc
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf
%%DOCSDIR%%/manual/R-FAQ.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf
%%DOCSDIR%%/manual/R-admin.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf
%%DOCSDIR%%/manual/R-data.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf
%%DOCSDIR%%/manual/R-exts.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf
%%DOCSDIR%%/manual/R-intro.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf
%%DOCSDIR%%/manual/R-ints.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf
%%DOCSDIR%%/manual/R-lang.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi
%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf
@dirrm lib/R/share/texmf/tex/latex
@dirrm lib/R/share/texmf/tex
@dirrm lib/R/share/texmf/bibtex/bst
@ -1533,6 +1571,22 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/rpart/R
@dirrm lib/R/library/rpart/Meta
@dirrm lib/R/library/rpart
%%NLS%%@dirrm lib/R/library/parallel/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/parallel/po/ru
%%NLS%%@dirrm lib/R/library/parallel/po/fr/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/parallel/po/fr
%%NLS%%@dirrm lib/R/library/parallel/po/en@quot/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/parallel/po/en@quot
%%NLS%%@dirrm lib/R/library/parallel/po/de/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/parallel/po/de
%%NLS%%@dirrm lib/R/library/parallel/po
@dirrm lib/R/library/parallel/libs
@dirrm lib/R/library/parallel/html
@dirrm lib/R/library/parallel/help
@dirrm lib/R/library/parallel/doc
@dirrm lib/R/library/parallel/R
@dirrm lib/R/library/parallel/Meta
@dirrm lib/R/library/parallel
%%NLS%%@dirrm lib/R/library/nnet/po/fr/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/nnet/po/fr
%%NLS%%@dirrm lib/R/library/nnet/po/en@quot/LC_MESSAGES
@ -1653,6 +1707,7 @@ lib/R/share/texmf/tex/latex/upquote.sty
%%NLS%%@dirrm lib/R/library/graphics/po/de
%%NLS%%@dirrm lib/R/library/graphics/po
@dirrm lib/R/library/graphics/html
@dirrm lib/R/library/graphics/help/figures
@dirrm lib/R/library/graphics/help
@dirrm lib/R/library/graphics/demo
@dirrm lib/R/library/graphics/R
@ -1705,11 +1760,8 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/datasets/html
@dirrm lib/R/library/datasets/help
@dirrm lib/R/library/datasets/data
@dirrm lib/R/library/datasets/R
@dirrm lib/R/library/datasets/Meta
@dirrm lib/R/library/datasets
%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN
%%NLS%%@dirrm lib/R/library/compiler/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/compiler/po/ru
%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR/LC_MESSAGES
@ -1733,6 +1785,11 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/codetools/R
@dirrm lib/R/library/codetools/Meta
@dirrm lib/R/library/codetools
%%NLS%%@dirrm lib/R/library/cluster/po/de/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/cluster/po/de
%%NLS%%@dirrm lib/R/library/cluster/po/en@quot/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/cluster/po/en@quot
%%NLS%%@dirrm lib/R/library/cluster/po
@dirrm lib/R/library/cluster/libs
@dirrm lib/R/library/cluster/html
@dirrm lib/R/library/cluster/help
@ -1845,7 +1902,6 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/bin/exec
@dirrm lib/R/bin
@dirrmtry lib/R
%%PORTDOCS%%%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images
@dirrm %%DOCSDIR%%/manual
@dirrm %%DOCSDIR%%/html
@dirrm %%DOCSDIR%%

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math/ess/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= ess
PORTVERSION= 5.14
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= http://ess.r-project.org/downloads/ess/
EXTRACT_SUFX= .tgz

1
math/p5-Statistics-R/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= Statistics-R
PORTVERSION= 0.23
PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:FANGLY

1
math/rkward-kde4/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= rkward
PORTVERSION= 0.5.7
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases
PKGNAMESUFFIX= -kde4

1
math/rkward-kde4/pkg-plist
View file

@ -596,6 +596,7 @@ lib/R/library/rkward/Meta/Rd.rds
lib/R/library/rkward/Meta/hsearch.rds
lib/R/library/rkward/Meta/links.rds
lib/R/library/rkward/Meta/package.rds
lib/R/library/rkward/NAMESPACE
lib/R/library/rkward/R/rkward
lib/R/library/rkward/R/rkward.rdb
lib/R/library/rkward/R/rkward.rdx

2
math/rkward/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= rkward
DISTVERSION= 0.4.9a
PORTREVISION= 12
PORTREVISION= 13
PORTEPOCH= 3
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29

2
math/rkward/pkg-plist
View file

@ -474,6 +474,7 @@ share/icons/locolor/32x32/apps/rkward.png
@cwd %%LOCALBASE%%
lib/R/library/rkward/DESCRIPTION
lib/R/library/rkward/INDEX
lib/R/library/rkward/NAMESPACE
lib/R/library/rkward/Meta/Rd.rds
lib/R/library/rkward/Meta/hsearch.rds
lib/R/library/rkward/Meta/links.rds
@ -492,7 +493,6 @@ lib/R/library/rkward/libs/rkward.so
@dirrm lib/R/library/rkward/libs
@dirrm lib/R/library/rkward/html
@dirrm lib/R/library/rkward/help
@dirrm lib/R/library/rkward/R-ex
@dirrm lib/R/library/rkward/R
@dirrm lib/R/library/rkward/Meta
@dirrm lib/R/library/rkward

2
math/rpy/Makefile
View file

@ -8,7 +8,7 @@
PORTNAME= rpy
PORTVERSION= 1.0.3
PORTREVISION= 19
PORTREVISION= 20
CATEGORIES= math
MASTER_SITES= SF

2
math/rpy/pkg-plist
View file

@ -1,4 +1,4 @@
%%PYTHON_SITELIBDIR%%/_rpy2132.so
%%PYTHON_SITELIBDIR%%/_rpy2140.so
%%PYTHON_SITELIBDIR%%/rpy.py
%%PYTHON_SITELIBDIR%%/rpy.pyc
%%PYTHON_SITELIBDIR%%/rpy.pyo

1
math/rpy2/Makefile
View file

@ -8,6 +8,7 @@
PORTNAME= rpy2
PORTVERSION= 2.2.4
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= CHEESESHOP \
SF

1
net/R-cran-twitteR/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= twitteR
PORTVERSION= 0.99.14
PORTREVISION= 1
CATEGORIES= net
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
science/R-cran-AMORE/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= AMORE
PORTVERSION= 0.2.12
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}

2
science/R-cran-DCluster/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= DCluster
DISTVERSION= 0.2-3
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
science/R-cran-Epi/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= Epi
PORTVERSION= 1.1.24
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
science/R-cran-bayesm/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= bayesm
PORTVERSION= 2.2.4
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}

2
science/R-cran-eco/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= eco
PORTVERSION= 3.1.5
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}

2
security/R-cran-ROAuth/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= ROAuth
PORTVERSION= 0.9.0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= security
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
security/R-cran-digest/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= digest
PORTVERSION= 0.5.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= security
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
textproc/R-cran-XML/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= XML
DISTVERSION= 3.4-3
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= textproc
DISTNAME= ${PORTNAME}_${DISTVERSION}

1
textproc/R-cran-xtable/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= xtable
DISTVERSION= 1.6-0
PORTREVISION= 1
CATEGORIES= textproc
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
www/R-cran-Rpad/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= Rpad
PORTVERSION= 1.3.0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= www
DISTNAME= ${PORTNAME}_${PORTVERSION}

2
www/R-cran-scrapeR/Makefile
View file

@ -7,7 +7,7 @@
PORTNAME= scrapeR
PORTVERSION= 0.1.6
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= www
DISTNAME= ${PORTNAME}_${PORTVERSION}