unbroke by upgrade to 20021018
drop maintainership PR: 45466 Submitted by: old maintainer
This commit is contained in:
Ying-Chieh Liao
parent
0d21dd0321
commit
5f94a921b1
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=70600
8 changed files with 72 additions and 30 deletions
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@ -6,26 +6,26 @@
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#
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PORTNAME= seaview
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PORTVERSION= 1.0
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PORTVERSION= 2002.10.18
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CATEGORIES= biology
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MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
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DISTNAME= ${PORTNAME}
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EXTRACT_SUFX= .tar
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MAINTAINER= frankch@waru.life.nthu.edu.tw
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MAINTAINER= ports@FreeBSD.org
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BROKEN= "Checksum is incorrect"
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LIB_DEPENDS= forms.1:${PORTSDIR}/x11-toolkits/xforms
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LIB_DEPENDS= fltk.1:${PORTSDIR}/x11-toolkits/fltk
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USE_X_PREFIX= YES
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NO_WRKSUBDIR= YES
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EXTRACT_CMD= ${TAR}
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EXTRACT_BEFORE_ARGS= -xf
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EXTRACT_AFTER_ARGS= # empty
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MAKEFILE= makefile
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do-install:
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@ ${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
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@ ${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
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@ (${MKDIR} ${PREFIX}/lib/X11/seaview)
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@ ${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
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@ -1 +1 @@
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MD5 (seaview.tar) = 2e0b15423aae80a91709b253fc7c5cab
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MD5 (seaview.tar) = 1f9b5157966b98f2724428d3fb1f6b17
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@ -1,20 +1,23 @@
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--- Makefile.orig Mon Aug 30 20:54:56 1999
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+++ Makefile Mon Aug 30 20:55:48 1999
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@@ -0,0 +1,17 @@
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+#matpt.h
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+#seaview.h
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+CC ?= gcc
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+CFLAGS+= -I${X11BASE}/include
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+LIBS = -L${X11BASE}/lib -lxforms -lX11 -lm
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+SRCS = align.c comlines.c load_seq.c regions.c seaview.c use_mase_files.c xfmatpt.c
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+OBJS = align.o comlines.o load_seq.o regions.o seaview.o use_mase_files.o xfmatpt.o
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--- makefile.orig Wed Sep 25 23:58:15 2002
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+++ makefile Mon Nov 18 11:26:42 2002
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@@ -1,13 +1,15 @@
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-FLTK = ../fltk-1.1.0
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+OPT = -O2
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-OBJECTS = seaview.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o
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+OBJECTS = seaview.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o
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-CFLAGS = -c $(OPT) -I$(FLTK)
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+CFLAGS = -c $(OPT) -I$(PREFIX)/include
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-CXX = CC
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+CXX = g++
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+
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+all: seaview
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+
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+seaview: $(OBJS)
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+ $(CC) -o seaview $(OBJS) $(LIBS)
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+
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+c.o.: $(SRCS)
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+ $(CC) $(CFLAGS) -c $(SRCS)
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+
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+
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seaview : $(OBJECTS)
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- $(CXX) -o $@ $(OBJECTS) -L$(FLTK)/lib -lfltk -lX11 -lm
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+ $(CXX) -o $@ $(OBJECTS) -L$(PREFIX)/lib -lfltk -lX11 -lMesaGL -lXext -lm
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.SUFFIXES: .cxx .h .o
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18
biology/seaview/files/patch-align.cxx
Normal file
18
biology/seaview/files/patch-align.cxx
Normal file
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@ -0,0 +1,18 @@
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--- align.cxx.orig Tue Oct 8 19:43:40 2002
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+++ align.cxx Mon Nov 18 11:40:08 2002
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@@ -1,5 +1,6 @@
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#include "seaview.h"
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#include <stdlib.h>
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+#include <unistd.h>
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#include <ctype.h>
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#ifndef WIN32
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#include <FL/x.H>
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@@ -155,7 +156,7 @@
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#endif
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debut = view->active_region->list->debut;
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fin = view->active_region->list->fin;
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-tmpnam(base_fname);
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+mkstemp(base_fname);
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/*
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convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
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*/
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20
biology/seaview/files/patch-chooser_plus.cxx
Normal file
20
biology/seaview/files/patch-chooser_plus.cxx
Normal file
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@ -0,0 +1,20 @@
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--- chooser_plus.cxx.orig Mon Nov 18 11:14:10 2002
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+++ chooser_plus.cxx Mon Nov 18 11:17:52 2002
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@@ -442,7 +442,7 @@
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strcmp(pat,f->browser.pattern))) {
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// if pattern is different, remove name but leave old directory:
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const char* p = f->input.value();
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- const char* q = fl_filename_name(p);
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+ const char* q = filename_name(p);
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f->input.value(p, q-p);
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}
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f->browser.pattern = pat;
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@@ -500,7 +500,7 @@
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strcmp(pat,f->browser.pattern))) {
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// if pattern is different, remove name but leave old directory:
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const char* p = f->input.value();
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- const char* q = fl_filename_name(p);
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+ const char* q = filename_name(p);
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f->input.value(p, q-p);
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}
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f->browser.pattern = pat;
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@ -1 +1 @@
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Multiple DNA sequence alignment editor
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Multiple DNA/protein sequence alignment editor
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@ -1,15 +1,15 @@
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Seaview is a multiple DNA sequence alignment editor.
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You can align DNA sequences from several organisms, and find out their
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Seaview is a multiple sequence alignment editor.
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You can align DNA/protein sequences from several organisms, and find out their
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relative postions in phylogenic tree.
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File test.mase can be used as an example file.
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Open the on-line help window through button 'Help' to learn seaview usage.
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Example mase files could be found at:
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WWW: http://pbil.univ-lyon1.fr/software/seaview.html
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ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
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*****************************************************************************
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* The help file (seaview.help) is located in /usr/X11R6/lib/X11/seaview/ .
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* Add an entry in your Xresources or Xdefaults file with:
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* Add an entry in your .Xresources or .Xdefaults file with:
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*
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* seaview*helpfile: /usr/X11R6/lib/X11/seaview/seaview.help
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*****************************************************************************
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@ -1,3 +1,4 @@
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bin/seaview
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bin/seaview_align.sh
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lib/X11/seaview/seaview.help
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@dirrm lib/X11/seaview
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