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biology/vcf2hap: Generate .hap file from VCF for haplohseq

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vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq.  vcf2hap is extremely fast and requires a trivial
amount of memory regardless of the size of the VCF file.
This commit is contained in:
Jason W. Bacon 2021-03-23 16:32:29 +00:00
parent 9b3ddc8d58
commit 633c71fbf7
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=569036
4 changed files with 35 additions and 0 deletions
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1
biology/Makefile
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@ -181,6 +181,7 @@
SUBDIR += trimmomatic
SUBDIR += ugene
SUBDIR += vcf-split
SUBDIR += vcf2hap
SUBDIR += vcflib
SUBDIR += vcftools
SUBDIR += velvet

26
biology/vcf2hap/Makefile Normal file
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@ -0,0 +1,26 @@
# $FreeBSD$
PORTNAME= vcf2hap
DISTVERSION= 0.1.2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Generate .hap file from VCF for haplohseq
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc
USE_GITHUB= yes
GH_ACCOUNT= auerlab
PLIST_FILES= bin/vcf2hap man/man1/vcf2hap.1.gz
pre-build:
(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)
do-test:
(cd ${WRKSRC}/Test && ./run-test.sh)
.include <bsd.port.mk>

3
biology/vcf2hap/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1616515046
SHA256 (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 69804e605bdf646582cbc33bb2839387da5cb2e8a3f83a8a03b5a464d01348f1
SIZE (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 197782

5
biology/vcf2hap/pkg-descr Normal file
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@ -0,0 +1,5 @@
vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq. vcf2hap is extremely fast and requires a trivial
amount of memory regardless of the size of the VCF file.
WWW: https://github.com/auerlab/vcf2hap