biology/vcf2hap: Generate .hap file from VCF for haplohseq
vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file is required by haplohseq. vcf2hap is extremely fast and requires a trivial amount of memory regardless of the size of the VCF file.
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2021-03-31 03:12:20 +00:00
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SUBDIR += trimmomatic
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SUBDIR += ugene
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SUBDIR += vcf-split
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SUBDIR += vcf2hap
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SUBDIR += vcflib
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SUBDIR += vcftools
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SUBDIR += velvet
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26
biology/vcf2hap/Makefile
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biology/vcf2hap/Makefile
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# $FreeBSD$
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PORTNAME= vcf2hap
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DISTVERSION= 0.1.2
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Generate .hap file from VCF for haplohseq
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LICENSE= BSD2CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc
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USE_GITHUB= yes
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GH_ACCOUNT= auerlab
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PLIST_FILES= bin/vcf2hap man/man1/vcf2hap.1.gz
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pre-build:
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(cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend)
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do-test:
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(cd ${WRKSRC}/Test && ./run-test.sh)
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.include <bsd.port.mk>
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biology/vcf2hap/distinfo
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biology/vcf2hap/distinfo
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TIMESTAMP = 1616515046
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SHA256 (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 69804e605bdf646582cbc33bb2839387da5cb2e8a3f83a8a03b5a464d01348f1
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SIZE (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 197782
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5
biology/vcf2hap/pkg-descr
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biology/vcf2hap/pkg-descr
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vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
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is required by haplohseq. vcf2hap is extremely fast and requires a trivial
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amount of memory regardless of the size of the VCF file.
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WWW: https://github.com/auerlab/vcf2hap
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