biology/ncbi-blast+: Upgrade to 2.8.1

Remove hacks that are no longer needed
New patch for endian.h location

Approved by:    jrm (mentor, implicit)

biology/ncbi-blast+/Makefile

@@ -1,8 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	ncbi-blast+
-DISTVERSION=	2.7.1
+DISTVERSION=	2.8.1
-PORTREVISION=	2
 CATEGORIES=	biology perl5 python
 MASTER_SITES=	https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
 		https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
@@ -33,34 +32,22 @@ LIB_DEPENDS=	libpcre.so:devel/pcre \
 RUN_DEPENDS=	p5-List-MoreUtils>=0:lang/p5-List-MoreUtils
 
 USES=		compiler:openmp gmake shebangfix perl5 python
+USE_LDCONFIG=	yes
+
 SHEBANG_FILES=	src/app/blast/legacy_blast.pl \
 		src/app/blast/update_blastdb.pl \
-		src/app/winmasker/windowmasker_2.2.22_adapter.py
+		src/app/winmasker/windowmasker_2.2.22_adapter.py \
-USE_LDCONFIG=	yes
+		src/app/blast/get_species_taxids.sh
 GNU_CONFIGURE=	yes
 
-# The test for amq can hang, but amq is not needed so just avoid the test
-CONFIGURE_ENV=	ncbi_cv_prog_amq_w=no
-
 # configure chooses /usr/local/bin/ar with no flags
 # FreeBSD boost port flagged by configure as untested version
 # --libdir=${PREFIX}/lib/ncbi-tools++ doesn't respect DESTDIR, so do
 # a postinstall mv.
-CONFIGURE_ARGS+=	AR="ar cr" --without-boost --libdir=${PREFIX}/lib/ncbi-tools++
+CONFIGURE_ARGS=	AR="ar cr" --without-boost --libdir=${PREFIX}/lib/ncbi-tools++
 
 WRKSRC_SUBDIR=		c++
 
-MAKE_JOBS_UNSAFE=	yes
-
-# Fix "undefined _ThreadRuneLocale" error on 10.0
-# Fix unknown options in configure
-post-patch:
-	@${REINPLACE_CMD} \
-		-e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' \
-		-e '/--infodir=DIR/d' \
-		-e '/--mandir=DIR/d' \
-		${WRKSRC}/src/build-system/configure
-
 post-install:
 	@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
 	@${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11

biology/ncbi-blast+/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1518995346
+TIMESTAMP = 1545573763
-SHA256 (ncbi-blast-2.7.1+-src.tar.gz) = 10a78d3007413a6d4c983d2acbf03ef84b622b82bd9a59c6bd9fbdde9d0298ca
+SHA256 (ncbi-blast-2.8.1+-src.tar.gz) = e03dd1a30e37cb8a859d3788a452c5d70ee1f9102d1ee0f93b2fbd145925118f
-SIZE (ncbi-blast-2.7.1+-src.tar.gz) = 23254824
+SIZE (ncbi-blast-2.8.1+-src.tar.gz) = 24973554

biology/ncbi-blast+/files/patch-src_util_checksum_farmhash_farmhash.h

@@ -0,0 +1,25 @@
+--- src/util/checksum/farmhash/farmhash.h.orig	2018-09-26 07:38:06 UTC
++++ src/util/checksum/farmhash/farmhash.h	2018-12-23 07:48:41 UTC
+@@ -305,15 +305,18 @@ inline uint128_t Fingerprint128(const Str& s) {
+   #if !defined(FARMHASH_BIG_ENDIAN)
+     #define FARMHASH_BIG_ENDIAN
+   #endif
+-#elif defined(__linux__) || defined(__CYGWIN__) || defined( __GNUC__ ) || defined( __GNU_LIBRARY__ )
+-  #include <endian.h> // libc6-dev, GLIBC
++#elif defined(__OpenBSD__) || defined(__NetBSD__) || defined(__FreeBSD__) || defined(__DragonFly__) || defined(__s390x__)
++  #include <sys/endian.h>
+   #if BYTE_ORDER == BIG_ENDIAN
+     #if !defined(FARMHASH_BIG_ENDIAN)
+       #define FARMHASH_BIG_ENDIAN
+     #endif
+   #endif
+-#elif defined(__OpenBSD__) || defined(__NetBSD__) || defined(__FreeBSD__) || defined(__DragonFly__) || defined(__s390x__)
+-  #include <sys/endian.h>
++// __GNUC__ actually does not imply the location of endian.h.  It could
++// be set on any system running GCC.  I'm wondering why this was added
++// Working around breakage for BSD systems by checking for BSD first.
++#elif defined(__linux__) || defined(__CYGWIN__) || defined( __GNUC__ ) || defined( __GNU_LIBRARY__ )
++  #include <endian.h> // libc6-dev, GLIBC
+   #if BYTE_ORDER == BIG_ENDIAN
+     #if !defined(FARMHASH_BIG_ENDIAN)
+       #define FARMHASH_BIG_ENDIAN

biology/ncbi-blast+/pkg-plist

@@ -1,5 +1,6 @@
 bin/blast_formatter
 bin/blastdb_aliastool
+bin/blastdb_convert
 bin/blastdbcheck
 bin/blastdbcmd
 bin/blastdbcp
@@ -12,7 +13,9 @@ bin/deltablast
 bin/dustmasker
 bin/gc_cli
 bin/gene_info_reader
+bin/get_species_taxids.sh
 bin/legacy_blast.pl
+bin/lmdbxx_sample
 bin/makeblastdb
 bin/makembindex
 bin/makeprofiledb
@@ -257,10 +260,12 @@ include/ncbi-tools++/cgi/ref_args.hpp
 include/ncbi-tools++/cgi/user_agent.hpp
 include/ncbi-tools++/common/boost_skew_guard.hpp
 include/ncbi-tools++/common/config/ncbiconf_msvc.h
+include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in
 include/ncbi-tools++/common/config/ncbiconf_universal.h
 include/ncbi-tools++/common/config/ncbiconf_xcode.h
 include/ncbi-tools++/common/header_template.hpp
 include/ncbi-tools++/common/metamodules_doxygen.h
+include/ncbi-tools++/common/ncbi_build_info.h
 include/ncbi-tools++/common/ncbi_build_ver.h
 include/ncbi-tools++/common/ncbi_build_ver.h.in
 include/ncbi-tools++/common/ncbi_build_ver.h.last
@@ -268,6 +273,7 @@ include/ncbi-tools++/common/ncbi_export.h
 include/ncbi-tools++/common/ncbi_package_ver.h
 include/ncbi-tools++/common/ncbi_pch_impl.hpp
 include/ncbi-tools++/common/ncbi_skew_guard.h
+include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep
 include/ncbi-tools++/common/ncbi_source_ver.h
 include/ncbi-tools++/common/ncbiconf_impl.h
 include/ncbi-tools++/common/test_assert.h
@@ -312,6 +318,7 @@ include/ncbi-tools++/connect/ncbi_sendmail.h
 include/ncbi-tools++/connect/ncbi_server_info.h
 include/ncbi-tools++/connect/ncbi_service.h
 include/ncbi-tools++/connect/ncbi_service_connector.h
+include/ncbi-tools++/connect/ncbi_service_cxx.hpp
 include/ncbi-tools++/connect/ncbi_socket.h
 include/ncbi-tools++/connect/ncbi_socket.hpp
 include/ncbi-tools++/connect/ncbi_socket_connector.h
@@ -334,6 +341,7 @@ include/ncbi-tools++/connect/services/grid_globals.hpp
 include/ncbi-tools++/connect/services/grid_rw_impl.hpp
 include/ncbi-tools++/connect/services/grid_worker.hpp
 include/ncbi-tools++/connect/services/grid_worker_app.hpp
+include/ncbi-tools++/connect/services/impl/netcache_api_int.hpp
 include/ncbi-tools++/connect/services/impl/neticache_client_int.hpp
 include/ncbi-tools++/connect/services/impl/netschedule_api_int.hpp
 include/ncbi-tools++/connect/services/impl/netstorage_impl.hpp
@@ -399,6 +407,7 @@ include/ncbi-tools++/corelib/ncbi_base64.h
 include/ncbi-tools++/corelib/ncbi_bswap.hpp
 include/ncbi-tools++/corelib/ncbi_config.hpp
 include/ncbi-tools++/corelib/ncbi_cookies.hpp
+include/ncbi-tools++/corelib/ncbi_fast.hpp
 include/ncbi-tools++/corelib/ncbi_limits.h
 include/ncbi-tools++/corelib/ncbi_limits.hpp
 include/ncbi-tools++/corelib/ncbi_mask.hpp
@@ -530,10 +539,14 @@ include/ncbi-tools++/ncbi_random_macro.h
 include/ncbi-tools++/ncbi_source_ver.h
 include/ncbi-tools++/ncbiconf.h
 include/ncbi-tools++/ncbiconf_unix.h
+include/ncbi-tools++/objects/access/.cvsignore
+include/ncbi-tools++/objects/access/.gitignore
 include/ncbi-tools++/objects/access/Link_set.hpp
 include/ncbi-tools++/objects/access/Link_set_.hpp
 include/ncbi-tools++/objects/access/NCBI_Access_module.hpp
 include/ncbi-tools++/objects/access/access__.hpp
+include/ncbi-tools++/objects/biblio/.cvsignore
+include/ncbi-tools++/objects/biblio/.gitignore
 include/ncbi-tools++/objects/biblio/Affil.hpp
 include/ncbi-tools++/objects/biblio/Affil_.hpp
 include/ncbi-tools++/objects/biblio/ArticleId.hpp
@@ -596,6 +609,8 @@ include/ncbi-tools++/objects/biblio/Title_.hpp
 include/ncbi-tools++/objects/biblio/biblio__.hpp
 include/ncbi-tools++/objects/biblio/biblio_macros.hpp
 include/ncbi-tools++/objects/biblio/citation_base.hpp
+include/ncbi-tools++/objects/biotree/.cvsignore
+include/ncbi-tools++/objects/biotree/.gitignore
 include/ncbi-tools++/objects/biotree/BioTreeContainer.hpp
 include/ncbi-tools++/objects/biotree/BioTreeContainer_.hpp
 include/ncbi-tools++/objects/biotree/DistanceMatrix.hpp
@@ -614,6 +629,8 @@ include/ncbi-tools++/objects/biotree/NodeSet.hpp
 include/ncbi-tools++/objects/biotree/NodeSet_.hpp
 include/ncbi-tools++/objects/biotree/Node_.hpp
 include/ncbi-tools++/objects/biotree/biotree__.hpp
+include/ncbi-tools++/objects/blast/.cvsignore
+include/ncbi-tools++/objects/blast/.gitignore
 include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply.hpp
 include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp
 include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reque.hpp
@@ -743,6 +760,8 @@ include/ncbi-tools++/objects/blast/blast__.hpp
 include/ncbi-tools++/objects/blast/blastclient.hpp
 include/ncbi-tools++/objects/blast/blastclient_.hpp
 include/ncbi-tools++/objects/blast/names.hpp
+include/ncbi-tools++/objects/blastdb/.cvsignore
+include/ncbi-tools++/objects/blastdb/.gitignore
 include/ncbi-tools++/objects/blastdb/Blast_db_mask_info.hpp
 include/ncbi-tools++/objects/blastdb/Blast_db_mask_info_.hpp
 include/ncbi-tools++/objects/blastdb/Blast_def_line.hpp
@@ -756,6 +775,8 @@ include/ncbi-tools++/objects/blastdb/Blast_mask_list_.hpp
 include/ncbi-tools++/objects/blastdb/NCBI_BlastDL_module.hpp
 include/ncbi-tools++/objects/blastdb/blastdb__.hpp
 include/ncbi-tools++/objects/blastdb/defline_extra.hpp
+include/ncbi-tools++/objects/blastxml/.cvsignore
+include/ncbi-tools++/objects/blastxml/.gitignore
 include/ncbi-tools++/objects/blastxml/BlastOutput.hpp
 include/ncbi-tools++/objects/blastxml/BlastOutput_.hpp
 include/ncbi-tools++/objects/blastxml/Hit.hpp
@@ -770,6 +791,8 @@ include/ncbi-tools++/objects/blastxml/Parameters_.hpp
 include/ncbi-tools++/objects/blastxml/Statistics.hpp
 include/ncbi-tools++/objects/blastxml/Statistics_.hpp
 include/ncbi-tools++/objects/blastxml/blastxml__.hpp
+include/ncbi-tools++/objects/blastxml2/.cvsignore
+include/ncbi-tools++/objects/blastxml2/.gitignore
 include/ncbi-tools++/objects/blastxml2/BlastOutput2.hpp
 include/ncbi-tools++/objects/blastxml2/BlastOutput2_.hpp
 include/ncbi-tools++/objects/blastxml2/BlastXML2.hpp
@@ -800,6 +823,8 @@ include/ncbi-tools++/objects/blastxml2/Statistics_.hpp
 include/ncbi-tools++/objects/blastxml2/Target.hpp
 include/ncbi-tools++/objects/blastxml2/Target_.hpp
 include/ncbi-tools++/objects/blastxml2/blastxml2__.hpp
+include/ncbi-tools++/objects/cdd/.cvsignore
+include/ncbi-tools++/objects/cdd/.gitignore
 include/ncbi-tools++/objects/cdd/Algorithm_type.hpp
 include/ncbi-tools++/objects/cdd/Algorithm_type_.hpp
 include/ncbi-tools++/objects/cdd/Align_annot.hpp
@@ -868,6 +893,8 @@ include/ncbi-tools++/objects/cdd/Update_align_.hpp
 include/ncbi-tools++/objects/cdd/Update_comment.hpp
 include/ncbi-tools++/objects/cdd/Update_comment_.hpp
 include/ncbi-tools++/objects/cdd/cdd__.hpp
+include/ncbi-tools++/objects/cn3d/.cvsignore
+include/ncbi-tools++/objects/cn3d/.gitignore
 include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix.hpp
 include/ncbi-tools++/objects/cn3d/Cn3d_GL_matrix_.hpp
 include/ncbi-tools++/objects/cn3d/Cn3d_backbone_label_style.hpp
@@ -910,12 +937,16 @@ include/ncbi-tools++/objects/cn3d/Cn3d_view_settings.hpp
 include/ncbi-tools++/objects/cn3d/Cn3d_view_settings_.hpp
 include/ncbi-tools++/objects/cn3d/NCBI_Cn3d_module.hpp
 include/ncbi-tools++/objects/cn3d/cn3d__.hpp
+include/ncbi-tools++/objects/coords/.cvsignore
+include/ncbi-tools++/objects/coords/.gitignore
 include/ncbi-tools++/objects/coords/HGVS_Coordinate.hpp
 include/ncbi-tools++/objects/coords/HGVS_Coordinate_.hpp
 include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set.hpp
 include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set_.hpp
 include/ncbi-tools++/objects/coords/NCBI_HGVSCoordinate_module.hpp
 include/ncbi-tools++/objects/coords/objcoords__.hpp
+include/ncbi-tools++/objects/docsum/.cvsignore
+include/ncbi-tools++/objects/docsum/.gitignore
 include/ncbi-tools++/objects/docsum/Assay.hpp
 include/ncbi-tools++/objects/docsum/Assay_.hpp
 include/ncbi-tools++/objects/docsum/Assembly.hpp
@@ -942,6 +973,8 @@ include/ncbi-tools++/objects/docsum/Rs_.hpp
 include/ncbi-tools++/objects/docsum/Ss.hpp
 include/ncbi-tools++/objects/docsum/Ss_.hpp
 include/ncbi-tools++/objects/docsum/docsum__.hpp
+include/ncbi-tools++/objects/entrez2/.cvsignore
+include/ncbi-tools++/objects/entrez2/.gitignore
 include/ncbi-tools++/objects/entrez2/E2Reply.hpp
 include/ncbi-tools++/objects/entrez2/E2Reply_.hpp
 include/ncbi-tools++/objects/entrez2/E2Request.hpp
@@ -1020,6 +1053,8 @@ include/ncbi-tools++/objects/entrez2/NCBI_Entrez2_module.hpp
 include/ncbi-tools++/objects/entrez2/entrez2__.hpp
 include/ncbi-tools++/objects/entrez2/entrez2_client.hpp
 include/ncbi-tools++/objects/entrez2/entrez2_client_.hpp
+include/ncbi-tools++/objects/entrezgene/.cvsignore
+include/ncbi-tools++/objects/entrezgene/.gitignore
 include/ncbi-tools++/objects/entrezgene/Entrezgene.hpp
 include/ncbi-tools++/objects/entrezgene/Entrezgene_.hpp
 include/ncbi-tools++/objects/entrezgene/Entrezgene_Set.hpp
@@ -1038,6 +1073,8 @@ include/ncbi-tools++/objects/entrezgene/Other_source_.hpp
 include/ncbi-tools++/objects/entrezgene/Xtra_Terms.hpp
 include/ncbi-tools++/objects/entrezgene/Xtra_Terms_.hpp
 include/ncbi-tools++/objects/entrezgene/entrezgene__.hpp
+include/ncbi-tools++/objects/featdef/.cvsignore
+include/ncbi-tools++/objects/featdef/.gitignore
 include/ncbi-tools++/objects/featdef/FeatDef.hpp
 include/ncbi-tools++/objects/featdef/FeatDefGroupSet.hpp
 include/ncbi-tools++/objects/featdef/FeatDefGroupSet_.hpp
@@ -1052,6 +1089,8 @@ include/ncbi-tools++/objects/featdef/FeatMolType.hpp
 include/ncbi-tools++/objects/featdef/FeatMolType_.hpp
 include/ncbi-tools++/objects/featdef/NCBI_FeatDef_module.hpp
 include/ncbi-tools++/objects/featdef/featdef__.hpp
+include/ncbi-tools++/objects/gbproj/.cvsignore
+include/ncbi-tools++/objects/gbproj/.gitignore
 include/ncbi-tools++/objects/gbproj/AbstractProjectItem.hpp
 include/ncbi-tools++/objects/gbproj/AbstractProjectItem_.hpp
 include/ncbi-tools++/objects/gbproj/DummyObsoleteType.hpp
@@ -1082,6 +1121,8 @@ include/ncbi-tools++/objects/gbproj/ViewMemento_.hpp
 include/ncbi-tools++/objects/gbproj/gbproj__.hpp
 include/ncbi-tools++/objects/gbproj/gbproj_export.h
 include/ncbi-tools++/objects/gbproj/igbproject.hpp
+include/ncbi-tools++/objects/gbseq/.cvsignore
+include/ncbi-tools++/objects/gbseq/.gitignore
 include/ncbi-tools++/objects/gbseq/GBAltSeqData.hpp
 include/ncbi-tools++/objects/gbseq/GBAltSeqData_.hpp
 include/ncbi-tools++/objects/gbseq/GBAltSeqItem.hpp
@@ -1120,6 +1161,8 @@ include/ncbi-tools++/objects/gbseq/GBXref.hpp
 include/ncbi-tools++/objects/gbseq/GBXref_.hpp
 include/ncbi-tools++/objects/gbseq/NCBI_GBSeq_module.hpp
 include/ncbi-tools++/objects/gbseq/gbseq__.hpp
+include/ncbi-tools++/objects/general/.cvsignore
+include/ncbi-tools++/objects/general/.gitignore
 include/ncbi-tools++/objects/general/Date.hpp
 include/ncbi-tools++/objects/general/Date_.hpp
 include/ncbi-tools++/objects/general/Date_std.hpp
@@ -1143,6 +1186,8 @@ include/ncbi-tools++/objects/general/general__.hpp
 include/ncbi-tools++/objects/general/general_exception.hpp
 include/ncbi-tools++/objects/general/general_macros.hpp
 include/ncbi-tools++/objects/general/uoconv.hpp
+include/ncbi-tools++/objects/genesbyloc/.cvsignore
+include/ncbi-tools++/objects/genesbyloc/.gitignore
 include/ncbi-tools++/objects/genesbyloc/GBL_Data.hpp
 include/ncbi-tools++/objects/genesbyloc/GBL_Data_.hpp
 include/ncbi-tools++/objects/genesbyloc/GBL_Gene.hpp
@@ -1151,6 +1196,8 @@ include/ncbi-tools++/objects/genesbyloc/GBL_Reply.hpp
 include/ncbi-tools++/objects/genesbyloc/GBL_Reply_.hpp
 include/ncbi-tools++/objects/genesbyloc/NCBI_GenesByLoc_module.hpp
 include/ncbi-tools++/objects/genesbyloc/genesbyloc__.hpp
+include/ncbi-tools++/objects/genomecoll/.cvsignore
+include/ncbi-tools++/objects/genomecoll/.gitignore
 include/ncbi-tools++/objects/genomecoll/GCClientRequest.hpp
 include/ncbi-tools++/objects/genomecoll/GCClientRequest_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClientResponse.hpp
@@ -1161,28 +1208,20 @@ include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI_.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_Error.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_Error_.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyF.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyF_.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyR.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyR_.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyS.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyS_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ_.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyReques.hpp
-include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyReques_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse_.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo.hpp
 include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo_.hpp
+include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx.hpp
+include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx_.hpp
 include/ncbi-tools++/objects/genomecoll/GC_Assemblies.hpp
 include/ncbi-tools++/objects/genomecoll/GC_Assemblies_.hpp
 include/ncbi-tools++/objects/genomecoll/GC_Assembly.hpp
@@ -1228,6 +1267,8 @@ include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp
 include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp
 include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp
 include/ncbi-tools++/objects/genomecoll/genomic_collections_cli_.hpp
+include/ncbi-tools++/objects/homologene/.cvsignore
+include/ncbi-tools++/objects/homologene/.gitignore
 include/ncbi-tools++/objects/homologene/HG_Alignment.hpp
 include/ncbi-tools++/objects/homologene/HG_AlignmentSet.hpp
 include/ncbi-tools++/objects/homologene/HG_AlignmentSet_.hpp
@@ -1256,6 +1297,8 @@ include/ncbi-tools++/objects/homologene/HG_Stats.hpp
 include/ncbi-tools++/objects/homologene/HG_Stats_.hpp
 include/ncbi-tools++/objects/homologene/HomoloGene_module.hpp
 include/ncbi-tools++/objects/homologene/homologene__.hpp
+include/ncbi-tools++/objects/id1/.cvsignore
+include/ncbi-tools++/objects/id1/.gitignore
 include/ncbi-tools++/objects/id1/Entry_complexities.hpp
 include/ncbi-tools++/objects/id1/Entry_complexities_.hpp
 include/ncbi-tools++/objects/id1/ID1SeqEntry_info.hpp
@@ -1276,6 +1319,8 @@ include/ncbi-tools++/objects/id1/NCBI_ID1Access_module.hpp
 include/ncbi-tools++/objects/id1/id1__.hpp
 include/ncbi-tools++/objects/id1/id1_client.hpp
 include/ncbi-tools++/objects/id1/id1_client_.hpp
+include/ncbi-tools++/objects/id2/.cvsignore
+include/ncbi-tools++/objects/id2/.gitignore
 include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk.hpp
 include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk_.hpp
 include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Split_Info.hpp
@@ -1336,6 +1381,8 @@ include/ncbi-tools++/objects/id2/id2_client.hpp
 include/ncbi-tools++/objects/id2/id2_client_.hpp
 include/ncbi-tools++/objects/id2/id2processor.hpp
 include/ncbi-tools++/objects/id2/id2processor_interface.hpp
+include/ncbi-tools++/objects/insdseq/.cvsignore
+include/ncbi-tools++/objects/insdseq/.gitignore
 include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp
 include/ncbi-tools++/objects/insdseq/INSDAltSeqData_.hpp
 include/ncbi-tools++/objects/insdseq/INSDAltSeqItem.hpp
@@ -1374,6 +1421,8 @@ include/ncbi-tools++/objects/insdseq/INSDXref.hpp
 include/ncbi-tools++/objects/insdseq/INSDXref_.hpp
 include/ncbi-tools++/objects/insdseq/INSD_INSDSeq_module.hpp
 include/ncbi-tools++/objects/insdseq/insdseq__.hpp
+include/ncbi-tools++/objects/macro/.cvsignore
+include/ncbi-tools++/objects/macro/.gitignore
 include/ncbi-tools++/objects/macro/AECRParse_action.hpp
 include/ncbi-tools++/objects/macro/AECRParse_action_.hpp
 include/ncbi-tools++/objects/macro/AECR_action.hpp
@@ -1734,12 +1783,16 @@ include/ncbi-tools++/objects/macro/Word_substitution_set_.hpp
 include/ncbi-tools++/objects/macro/Xref_type.hpp
 include/ncbi-tools++/objects/macro/Xref_type_.hpp
 include/ncbi-tools++/objects/macro/macro__.hpp
+include/ncbi-tools++/objects/medlars/.cvsignore
+include/ncbi-tools++/objects/medlars/.gitignore
 include/ncbi-tools++/objects/medlars/Medlars_entry.hpp
 include/ncbi-tools++/objects/medlars/Medlars_entry_.hpp
 include/ncbi-tools++/objects/medlars/Medlars_record.hpp
 include/ncbi-tools++/objects/medlars/Medlars_record_.hpp
 include/ncbi-tools++/objects/medlars/NCBI_Medlars_module.hpp
 include/ncbi-tools++/objects/medlars/medlars__.hpp
+include/ncbi-tools++/objects/medline/.cvsignore
+include/ncbi-tools++/objects/medline/.gitignore
 include/ncbi-tools++/objects/medline/DocRef.hpp
 include/ncbi-tools++/objects/medline/DocRef_.hpp
 include/ncbi-tools++/objects/medline/Medline_entry.hpp
@@ -1756,6 +1809,8 @@ include/ncbi-tools++/objects/medline/Medline_si.hpp
 include/ncbi-tools++/objects/medline/Medline_si_.hpp
 include/ncbi-tools++/objects/medline/NCBI_Medline_module.hpp
 include/ncbi-tools++/objects/medline/medline__.hpp
+include/ncbi-tools++/objects/mim/.cvsignore
+include/ncbi-tools++/objects/mim/.gitignore
 include/ncbi-tools++/objects/mim/Mim_allelic_variant.hpp
 include/ncbi-tools++/objects/mim/Mim_allelic_variant_.hpp
 include/ncbi-tools++/objects/mim/Mim_author.hpp
@@ -1787,6 +1842,8 @@ include/ncbi-tools++/objects/mim/mim__.hpp
 include/ncbi-tools++/objects/misc/error_codes.hpp
 include/ncbi-tools++/objects/misc/sequence_macros.hpp
 include/ncbi-tools++/objects/misc/sequence_util_macros.hpp
+include/ncbi-tools++/objects/mla/.cvsignore
+include/ncbi-tools++/objects/mla/.gitignore
 include/ncbi-tools++/objects/mla/Error_val.hpp
 include/ncbi-tools++/objects/mla/Error_val_.hpp
 include/ncbi-tools++/objects/mla/Mla_back.hpp
@@ -1803,6 +1860,8 @@ include/ncbi-tools++/objects/mla/Title_type_.hpp
 include/ncbi-tools++/objects/mla/mla__.hpp
 include/ncbi-tools++/objects/mla/mla_client.hpp
 include/ncbi-tools++/objects/mla/mla_client_.hpp
+include/ncbi-tools++/objects/mmdb1/.cvsignore
+include/ncbi-tools++/objects/mmdb1/.gitignore
 include/ncbi-tools++/objects/mmdb1/Atom.hpp
 include/ncbi-tools++/objects/mmdb1/Atom_.hpp
 include/ncbi-tools++/objects/mmdb1/Atom_id.hpp
@@ -1864,6 +1923,8 @@ include/ncbi-tools++/objects/mmdb1/Residue_graph_pntr_.hpp
 include/ncbi-tools++/objects/mmdb1/Residue_id.hpp
 include/ncbi-tools++/objects/mmdb1/Residue_id_.hpp
 include/ncbi-tools++/objects/mmdb1/mmdb1__.hpp
+include/ncbi-tools++/objects/mmdb2/.cvsignore
+include/ncbi-tools++/objects/mmdb2/.gitignore
 include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id.hpp
 include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id_.hpp
 include/ncbi-tools++/objects/mmdb2/Alternate_conformation_ids.hpp
@@ -1910,6 +1971,8 @@ include/ncbi-tools++/objects/mmdb2/T_mesh_.hpp
 include/ncbi-tools++/objects/mmdb2/Triangles.hpp
 include/ncbi-tools++/objects/mmdb2/Triangles_.hpp
 include/ncbi-tools++/objects/mmdb2/mmdb2__.hpp
+include/ncbi-tools++/objects/mmdb3/.cvsignore
+include/ncbi-tools++/objects/mmdb3/.gitignore
 include/ncbi-tools++/objects/mmdb3/Align_stats.hpp
 include/ncbi-tools++/objects/mmdb3/Align_stats_.hpp
 include/ncbi-tools++/objects/mmdb3/Atom_pntrs.hpp
@@ -1986,6 +2049,8 @@ include/ncbi-tools++/objects/mmdb3/Trans_matrix_.hpp
 include/ncbi-tools++/objects/mmdb3/Transform.hpp
 include/ncbi-tools++/objects/mmdb3/Transform_.hpp
 include/ncbi-tools++/objects/mmdb3/mmdb3__.hpp
+include/ncbi-tools++/objects/ncbimime/.cvsignore
+include/ncbi-tools++/objects/ncbimime/.gitignore
 include/ncbi-tools++/objects/ncbimime/Biostruc_align.hpp
 include/ncbi-tools++/objects/ncbimime/Biostruc_align_.hpp
 include/ncbi-tools++/objects/ncbimime/Biostruc_align_seq.hpp
@@ -2006,6 +2071,8 @@ include/ncbi-tools++/objects/ncbimime/NCBI_Mime_module.hpp
 include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1.hpp
 include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1_.hpp
 include/ncbi-tools++/objects/ncbimime/ncbimime__.hpp
+include/ncbi-tools++/objects/objprt/.cvsignore
+include/ncbi-tools++/objects/objprt/.gitignore
 include/ncbi-tools++/objects/objprt/NCBI_ObjPrt_module.hpp
 include/ncbi-tools++/objects/objprt/PrintForm.hpp
 include/ncbi-tools++/objects/objprt/PrintFormBlock.hpp
@@ -2028,6 +2095,8 @@ include/ncbi-tools++/objects/objprt/TemplateName_.hpp
 include/ncbi-tools++/objects/objprt/UserFormat.hpp
 include/ncbi-tools++/objects/objprt/UserFormat_.hpp
 include/ncbi-tools++/objects/objprt/objprt__.hpp
+include/ncbi-tools++/objects/omssa/.cvsignore
+include/ncbi-tools++/objects/omssa/.gitignore
 include/ncbi-tools++/objects/omssa/MSBioseq.hpp
 include/ncbi-tools++/objects/omssa/MSBioseqSet.hpp
 include/ncbi-tools++/objects/omssa/MSBioseqSet_.hpp
@@ -2114,6 +2183,8 @@ include/ncbi-tools++/objects/omssa/NameValue.hpp
 include/ncbi-tools++/objects/omssa/NameValue_.hpp
 include/ncbi-tools++/objects/omssa/OMSSA_module.hpp
 include/ncbi-tools++/objects/omssa/omssa__.hpp
+include/ncbi-tools++/objects/pcassay/.cvsignore
+include/ncbi-tools++/objects/pcassay/.gitignore
 include/ncbi-tools++/objects/pcassay/NCBI_PCAssay_module.hpp
 include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef.hpp
 include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef_.hpp
@@ -2148,6 +2219,8 @@ include/ncbi-tools++/objects/pcassay/PC_RealMinMax_.hpp
 include/ncbi-tools++/objects/pcassay/PC_ResultType.hpp
 include/ncbi-tools++/objects/pcassay/PC_ResultType_.hpp
 include/ncbi-tools++/objects/pcassay/pcassay__.hpp
+include/ncbi-tools++/objects/pcsubstance/.cvsignore
+include/ncbi-tools++/objects/pcsubstance/.gitignore
 include/ncbi-tools++/objects/pcsubstance/NCBI_PCSubstance_module.hpp
 include/ncbi-tools++/objects/pcsubstance/PC_AtomInt.hpp
 include/ncbi-tools++/objects/pcsubstance/PC_AtomInt_.hpp
@@ -2224,6 +2297,8 @@ include/ncbi-tools++/objects/pcsubstance/PC_Urn_.hpp
 include/ncbi-tools++/objects/pcsubstance/PC_XRefData.hpp
 include/ncbi-tools++/objects/pcsubstance/PC_XRefData_.hpp
 include/ncbi-tools++/objects/pcsubstance/pcsubstance__.hpp
+include/ncbi-tools++/objects/proj/.cvsignore
+include/ncbi-tools++/objects/proj/.gitignore
 include/ncbi-tools++/objects/proj/NCBI_Project_module.hpp
 include/ncbi-tools++/objects/proj/Projdesc.hpp
 include/ncbi-tools++/objects/proj/Projdesc_.hpp
@@ -2236,6 +2311,8 @@ include/ncbi-tools++/objects/proj/Project_id_.hpp
 include/ncbi-tools++/objects/proj/Project_item.hpp
 include/ncbi-tools++/objects/proj/Project_item_.hpp
 include/ncbi-tools++/objects/proj/proj__.hpp
+include/ncbi-tools++/objects/pub/.cvsignore
+include/ncbi-tools++/objects/pub/.gitignore
 include/ncbi-tools++/objects/pub/NCBI_Pub_module.hpp
 include/ncbi-tools++/objects/pub/Pub.hpp
 include/ncbi-tools++/objects/pub/Pub_.hpp
@@ -2245,12 +2322,16 @@ include/ncbi-tools++/objects/pub/Pub_set.hpp
 include/ncbi-tools++/objects/pub/Pub_set_.hpp
 include/ncbi-tools++/objects/pub/pub__.hpp
 include/ncbi-tools++/objects/pub/pub_macros.hpp
+include/ncbi-tools++/objects/pubmed/.cvsignore
+include/ncbi-tools++/objects/pubmed/.gitignore
 include/ncbi-tools++/objects/pubmed/NCBI_PubMed_module.hpp
 include/ncbi-tools++/objects/pubmed/Pubmed_entry.hpp
 include/ncbi-tools++/objects/pubmed/Pubmed_entry_.hpp
 include/ncbi-tools++/objects/pubmed/Pubmed_url.hpp
 include/ncbi-tools++/objects/pubmed/Pubmed_url_.hpp
 include/ncbi-tools++/objects/pubmed/pubmed__.hpp
+include/ncbi-tools++/objects/remap/.cvsignore
+include/ncbi-tools++/objects/remap/.gitignore
 include/ncbi-tools++/objects/remap/NCBI_Remap_module.hpp
 include/ncbi-tools++/objects/remap/RMReply.hpp
 include/ncbi-tools++/objects/remap/RMReply_.hpp
@@ -2271,6 +2352,8 @@ include/ncbi-tools++/objects/remap/Remap_result_.hpp
 include/ncbi-tools++/objects/remap/remap__.hpp
 include/ncbi-tools++/objects/remap/remap_client.hpp
 include/ncbi-tools++/objects/remap/remap_client_.hpp
+include/ncbi-tools++/objects/scoremat/.cvsignore
+include/ncbi-tools++/objects/scoremat/.gitignore
 include/ncbi-tools++/objects/scoremat/BlockProperty.hpp
 include/ncbi-tools++/objects/scoremat/BlockProperty_.hpp
 include/ncbi-tools++/objects/scoremat/CoreBlock.hpp
@@ -2297,6 +2380,8 @@ include/ncbi-tools++/objects/scoremat/Site_annot_.hpp
 include/ncbi-tools++/objects/scoremat/Site_annot_set.hpp
 include/ncbi-tools++/objects/scoremat/Site_annot_set_.hpp
 include/ncbi-tools++/objects/scoremat/scoremat__.hpp
+include/ncbi-tools++/objects/seq/.cvsignore
+include/ncbi-tools++/objects/seq/.gitignore
 include/ncbi-tools++/objects/seq/Align_def.hpp
 include/ncbi-tools++/objects/seq/Align_def_.hpp
 include/ncbi-tools++/objects/seq/Annot_descr.hpp
@@ -2398,6 +2483,8 @@ include/ncbi-tools++/objects/seq/seqport_util.hpp
 include/ncbi-tools++/objects/seq/so_map.hpp
 include/ncbi-tools++/objects/seq/sofa_map.hpp
 include/ncbi-tools++/objects/seq/sofa_type.hpp
+include/ncbi-tools++/objects/seqalign/.cvsignore
+include/ncbi-tools++/objects/seqalign/.gitignore
 include/ncbi-tools++/objects/seqalign/Dense_diag.hpp
 include/ncbi-tools++/objects/seqalign/Dense_diag_.hpp
 include/ncbi-tools++/objects/seqalign/Dense_seg.hpp
@@ -2438,6 +2525,8 @@ include/ncbi-tools++/objects/seqalign/Std_seg_.hpp
 include/ncbi-tools++/objects/seqalign/seqalign__.hpp
 include/ncbi-tools++/objects/seqalign/seqalign_exception.hpp
 include/ncbi-tools++/objects/seqalign/seqalign_macros.hpp
+include/ncbi-tools++/objects/seqblock/.cvsignore
+include/ncbi-tools++/objects/seqblock/.gitignore
 include/ncbi-tools++/objects/seqblock/EMBL_General_module.hpp
 include/ncbi-tools++/objects/seqblock/EMBL_block.hpp
 include/ncbi-tools++/objects/seqblock/EMBL_block_.hpp
@@ -2466,6 +2555,8 @@ include/ncbi-tools++/objects/seqblock/SP_block.hpp
 include/ncbi-tools++/objects/seqblock/SP_block_.hpp
 include/ncbi-tools++/objects/seqblock/seqblock__.hpp
 include/ncbi-tools++/objects/seqblock/seqblock_macros.hpp
+include/ncbi-tools++/objects/seqcode/.cvsignore
+include/ncbi-tools++/objects/seqcode/.gitignore
 include/ncbi-tools++/objects/seqcode/NCBI_SeqCode_module.hpp
 include/ncbi-tools++/objects/seqcode/Seq_code_set.hpp
 include/ncbi-tools++/objects/seqcode/Seq_code_set_.hpp
@@ -2476,6 +2567,8 @@ include/ncbi-tools++/objects/seqcode/Seq_code_type_.hpp
 include/ncbi-tools++/objects/seqcode/Seq_map_table.hpp
 include/ncbi-tools++/objects/seqcode/Seq_map_table_.hpp
 include/ncbi-tools++/objects/seqcode/seqcode__.hpp
+include/ncbi-tools++/objects/seqedit/.cvsignore
+include/ncbi-tools++/objects/seqedit/.gitignore
 include/ncbi-tools++/objects/seqedit/NCBI_SeqEdit_module.hpp
 include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd.hpp
 include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_.hpp
@@ -2524,6 +2617,8 @@ include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_SetDescr_.hpp
 include/ncbi-tools++/objects/seqedit/SeqEdit_Id.hpp
 include/ncbi-tools++/objects/seqedit/SeqEdit_Id_.hpp
 include/ncbi-tools++/objects/seqedit/seqedit__.hpp
+include/ncbi-tools++/objects/seqfeat/.cvsignore
+include/ncbi-tools++/objects/seqfeat/.gitignore
 include/ncbi-tools++/objects/seqfeat/BinomialOrgName.hpp
 include/ncbi-tools++/objects/seqfeat/BinomialOrgName_.hpp
 include/ncbi-tools++/objects/seqfeat/BioSource.hpp
@@ -2644,6 +2739,8 @@ include/ncbi-tools++/objects/seqfeat/Variation_ref.hpp
 include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp
 include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp
 include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp
+include/ncbi-tools++/objects/seqloc/.cvsignore
+include/ncbi-tools++/objects/seqloc/.gitignore
 include/ncbi-tools++/objects/seqloc/Giimport_id.hpp
 include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp
 include/ncbi-tools++/objects/seqloc/NCBI_Seqloc_module.hpp
@@ -2679,6 +2776,8 @@ include/ncbi-tools++/objects/seqloc/Textseq_id.hpp
 include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp
 include/ncbi-tools++/objects/seqloc/seqloc__.hpp
 include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp
+include/ncbi-tools++/objects/seqres/.cvsignore
+include/ncbi-tools++/objects/seqres/.gitignore
 include/ncbi-tools++/objects/seqres/Byte_graph.hpp
 include/ncbi-tools++/objects/seqres/Byte_graph_.hpp
 include/ncbi-tools++/objects/seqres/Int_graph.hpp
@@ -2689,6 +2788,8 @@ include/ncbi-tools++/objects/seqres/Real_graph_.hpp
 include/ncbi-tools++/objects/seqres/Seq_graph.hpp
 include/ncbi-tools++/objects/seqres/Seq_graph_.hpp
 include/ncbi-tools++/objects/seqres/seqres__.hpp
+include/ncbi-tools++/objects/seqset/.cvsignore
+include/ncbi-tools++/objects/seqset/.gitignore
 include/ncbi-tools++/objects/seqset/Bioseq_set.hpp
 include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp
 include/ncbi-tools++/objects/seqset/NCBI_Seqset_module.hpp
@@ -2698,6 +2799,8 @@ include/ncbi-tools++/objects/seqset/gb_release_file.hpp
 include/ncbi-tools++/objects/seqset/seqset__.hpp
 include/ncbi-tools++/objects/seqset/seqset_exception.hpp
 include/ncbi-tools++/objects/seqset/seqset_macros.hpp
+include/ncbi-tools++/objects/seqsplit/.cvsignore
+include/ncbi-tools++/objects/seqsplit/.gitignore
 include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids.hpp
 include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids_.hpp
 include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Info.hpp
@@ -2754,6 +2857,8 @@ include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info.hpp
 include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info_.hpp
 include/ncbi-tools++/objects/seqsplit/NCBI_Seq_split_module.hpp
 include/ncbi-tools++/objects/seqsplit/seqsplit__.hpp
+include/ncbi-tools++/objects/seqtable/.cvsignore
+include/ncbi-tools++/objects/seqtable/.gitignore
 include/ncbi-tools++/objects/seqtable/BVector_data.hpp
 include/ncbi-tools++/objects/seqtable/BVector_data_.hpp
 include/ncbi-tools++/objects/seqtable/CommonBytes_table.hpp
@@ -2780,6 +2885,8 @@ include/ncbi-tools++/objects/seqtable/Seq_table_.hpp
 include/ncbi-tools++/objects/seqtable/impl/delta_cache.hpp
 include/ncbi-tools++/objects/seqtable/seq_table_exception.hpp
 include/ncbi-tools++/objects/seqtable/seqtable__.hpp
+include/ncbi-tools++/objects/seqtest/.cvsignore
+include/ncbi-tools++/objects/seqtest/.gitignore
 include/ncbi-tools++/objects/seqtest/NCBI_SeqTest_module.hpp
 include/ncbi-tools++/objects/seqtest/SeqTestResults.hpp
 include/ncbi-tools++/objects/seqtest/SeqTestResults_.hpp
@@ -2788,6 +2895,8 @@ include/ncbi-tools++/objects/seqtest/Seq_test_result_.hpp
 include/ncbi-tools++/objects/seqtest/Seq_test_result_set.hpp
 include/ncbi-tools++/objects/seqtest/Seq_test_result_set_.hpp
 include/ncbi-tools++/objects/seqtest/seqtest__.hpp
+include/ncbi-tools++/objects/submit/.cvsignore
+include/ncbi-tools++/objects/submit/.gitignore
 include/ncbi-tools++/objects/submit/Contact_info.hpp
 include/ncbi-tools++/objects/submit/Contact_info_.hpp
 include/ncbi-tools++/objects/submit/NCBI_Submit_module.hpp
@@ -2797,6 +2906,8 @@ include/ncbi-tools++/objects/submit/Submit_block.hpp
 include/ncbi-tools++/objects/submit/Submit_block_.hpp
 include/ncbi-tools++/objects/submit/submit__.hpp
 include/ncbi-tools++/objects/submit/submit_macros.hpp
+include/ncbi-tools++/objects/taxon1/.cvsignore
+include/ncbi-tools++/objects/taxon1/.gitignore
 include/ncbi-tools++/objects/taxon1/NCBI_Taxon1_module.hpp
 include/ncbi-tools++/objects/taxon1/Taxon1_data.hpp
 include/ncbi-tools++/objects/taxon1/Taxon1_data_.hpp
@@ -2812,8 +2923,11 @@ include/ncbi-tools++/objects/taxon1/Taxon1_resp.hpp
 include/ncbi-tools++/objects/taxon1/Taxon1_resp_.hpp
 include/ncbi-tools++/objects/taxon1/Taxon2_data.hpp
 include/ncbi-tools++/objects/taxon1/Taxon2_data_.hpp
+include/ncbi-tools++/objects/taxon1/local_taxon.hpp
 include/ncbi-tools++/objects/taxon1/taxon1.hpp
 include/ncbi-tools++/objects/taxon1/taxon1__.hpp
+include/ncbi-tools++/objects/taxon3/.cvsignore
+include/ncbi-tools++/objects/taxon3/.gitignore
 include/ncbi-tools++/objects/taxon3/NCBI_Taxon3_module.hpp
 include/ncbi-tools++/objects/taxon3/SequenceOfInt.hpp
 include/ncbi-tools++/objects/taxon3/SequenceOfInt_.hpp
@@ -2837,12 +2951,16 @@ include/ncbi-tools++/objects/taxon3/cached_taxon3.hpp
 include/ncbi-tools++/objects/taxon3/itaxon3.hpp
 include/ncbi-tools++/objects/taxon3/taxon3.hpp
 include/ncbi-tools++/objects/taxon3/taxon3__.hpp
+include/ncbi-tools++/objects/tinyseq/.cvsignore
+include/ncbi-tools++/objects/tinyseq/.gitignore
 include/ncbi-tools++/objects/tinyseq/NCBI_TSeq_module.hpp
 include/ncbi-tools++/objects/tinyseq/TSeq.hpp
 include/ncbi-tools++/objects/tinyseq/TSeqSet.hpp
 include/ncbi-tools++/objects/tinyseq/TSeqSet_.hpp
 include/ncbi-tools++/objects/tinyseq/TSeq_.hpp
 include/ncbi-tools++/objects/tinyseq/tinyseq__.hpp
+include/ncbi-tools++/objects/trackmgr/.cvsignore
+include/ncbi-tools++/objects/trackmgr/.gitignore
 include/ncbi-tools++/objects/trackmgr/NCBI_TrackManager_module.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp
@@ -2874,6 +2992,10 @@ include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDRequest.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDRequest_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRepl.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRepl_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRequ.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRequ_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetRequest.hpp
@@ -2884,6 +3006,8 @@ include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReply.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReply_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReques.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReques_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_DHubId.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_DHubId_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_DTrackId.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_DTrackId_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_DatasetItem.hpp
@@ -2900,6 +3024,10 @@ include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackRequest_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrack_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_GenomeContext.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_GenomeContext_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_Hub.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_HubTrack.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_HubTrack_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_Hub_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_Identity.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_IdentityId.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_IdentityIdType.hpp
@@ -2924,6 +3052,8 @@ include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectio.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectio_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectix.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectix_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_Reply.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_Reply_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_Request.hpp
@@ -2940,6 +3070,8 @@ include/ncbi-tools++/objects/trackmgr/TMgr_Status.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_Status_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRe.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRe_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRx.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRx_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextRep.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextRep_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextReq.hpp
@@ -2966,9 +3098,12 @@ include/ncbi-tools++/objects/trackmgr/TMgr_TrackSetType_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_TrackSet_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_TypeStat.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_TypeStat_.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_TypeTrackType.hpp
+include/ncbi-tools++/objects/trackmgr/TMgr_TypeTrackType_.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest.hpp
 include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest_.hpp
 include/ncbi-tools++/objects/trackmgr/blast_client.hpp
+include/ncbi-tools++/objects/trackmgr/createremotetrack_client.hpp
 include/ncbi-tools++/objects/trackmgr/createtrackset_client.hpp
 include/ncbi-tools++/objects/trackmgr/createusertrack_client.hpp
 include/ncbi-tools++/objects/trackmgr/displaytrack_client.hpp
@@ -2984,12 +3119,16 @@ include/ncbi-tools++/objects/trackmgr/trackmgr_client.hpp
 include/ncbi-tools++/objects/trackmgr/trackmgr_client_.hpp
 include/ncbi-tools++/objects/trackmgr/trackmgr_export.h
 include/ncbi-tools++/objects/trackmgr/trackset_client.hpp
+include/ncbi-tools++/objects/valerr/.cvsignore
+include/ncbi-tools++/objects/valerr/.gitignore
 include/ncbi-tools++/objects/valerr/NCBI_ValErrors_module.hpp
 include/ncbi-tools++/objects/valerr/ValidErrItem.hpp
 include/ncbi-tools++/objects/valerr/ValidErrItem_.hpp
 include/ncbi-tools++/objects/valerr/ValidError.hpp
 include/ncbi-tools++/objects/valerr/ValidError_.hpp
 include/ncbi-tools++/objects/valerr/valerr__.hpp
+include/ncbi-tools++/objects/valid/.cvsignore
+include/ncbi-tools++/objects/valid/.gitignore
 include/ncbi-tools++/objects/valid/Comment_rule.hpp
 include/ncbi-tools++/objects/valid/Comment_rule_.hpp
 include/ncbi-tools++/objects/valid/Comment_set.hpp
@@ -3008,6 +3147,8 @@ include/ncbi-tools++/objects/valid/Phrase_list_.hpp
 include/ncbi-tools++/objects/valid/Severity_level.hpp
 include/ncbi-tools++/objects/valid/Severity_level_.hpp
 include/ncbi-tools++/objects/valid/valid__.hpp
+include/ncbi-tools++/objects/variation/.cvsignore
+include/ncbi-tools++/objects/variation/.gitignore
 include/ncbi-tools++/objects/variation/NCBI_VariationPackage_module.hpp
 include/ncbi-tools++/objects/variation/VariantPlacement.hpp
 include/ncbi-tools++/objects/variation/VariantPlacement_.hpp
@@ -3018,6 +3159,32 @@ include/ncbi-tools++/objects/variation/VariationMethod.hpp
 include/ncbi-tools++/objects/variation/VariationMethod_.hpp
 include/ncbi-tools++/objects/variation/Variation_.hpp
 include/ncbi-tools++/objects/variation/variation__.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.cvsignore
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.gitignore
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/NCBI_search_by_rsid_module.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Placement.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Placement_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.cvsignore
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.gitignore
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSection.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSectionValue.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSectionValue_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipSection_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceError.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceError_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceReply.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceReply_.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/NCBI_dbsnp_tooltips_module.hpp
+include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.hpp
+include/ncbi-tools++/objects/varrep/.cvsignore
+include/ncbi-tools++/objects/varrep/.gitignore
 include/ncbi-tools++/objects/varrep/AaInterval.hpp
 include/ncbi-tools++/objects/varrep/AaInterval_.hpp
 include/ncbi-tools++/objects/varrep/AaLocation.hpp
@@ -3265,6 +3432,8 @@ include/ncbi-tools++/objtools/blast/gene_info_reader/file_utils.hpp
 include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info.hpp
 include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info_reader.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/column_reader.hpp
+include/ncbi-tools++/objtools/blast/seqdb_reader/impl/lmdb++.h
+include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbcol.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbfile.hpp
@@ -3276,9 +3445,11 @@ include/ncbi-tools++/objtools/blast/seqdb_reader/seqdb.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbblob.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbcommon.hpp
 include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbexpert.hpp
+include/ncbi-tools++/objtools/blast/seqdb_reader/seqidlist_reader.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/build_db.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/impl/criteria.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/multisource_util.hpp
+include/ncbi-tools++/objtools/blast/seqdb_writer/seqidlist_writer.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp
@@ -3286,8 +3457,10 @@ include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
 include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
+include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp
 include/ncbi-tools++/objtools/blast/services/blast_services.hpp
 include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
+include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp
 include/ncbi-tools++/objtools/cleanup/cleanup.hpp
 include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
 include/ncbi-tools++/objtools/cleanup/newcleanup.hpp
@@ -3340,6 +3513,7 @@ include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp
 include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp
 include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp
 include/ncbi-tools++/objtools/data_loaders/loaders.hpp
+include/ncbi-tools++/objtools/edit/apply_mods.hpp
 include/ncbi-tools++/objtools/edit/apply_object.hpp
 include/ncbi-tools++/objtools/edit/autodef.hpp
 include/ncbi-tools++/objtools/edit/autodef_options.hpp
@@ -3348,8 +3522,11 @@ include/ncbi-tools++/objtools/edit/autodef_with_tax.hpp
 include/ncbi-tools++/objtools/edit/capitalization_string.hpp
 include/ncbi-tools++/objtools/edit/cds_fix.hpp
 include/ncbi-tools++/objtools/edit/dblink_field.hpp
+include/ncbi-tools++/objtools/edit/edit_error.hpp
 include/ncbi-tools++/objtools/edit/edit_exception.hpp
+include/ncbi-tools++/objtools/edit/external_annots.hpp
 include/ncbi-tools++/objtools/edit/feattable_edit.hpp
+include/ncbi-tools++/objtools/edit/feature_propagate.hpp
 include/ncbi-tools++/objtools/edit/field_handler.hpp
 include/ncbi-tools++/objtools/edit/gap_trim.hpp
 include/ncbi-tools++/objtools/edit/gaps_edit.hpp
@@ -3369,6 +3546,7 @@ include/ncbi-tools++/objtools/edit/source_edit.hpp
 include/ncbi-tools++/objtools/edit/string_constraint.hpp
 include/ncbi-tools++/objtools/edit/struc_comm_field.hpp
 include/ncbi-tools++/objtools/edit/text_desc_field.hpp
+include/ncbi-tools++/objtools/edit/text_object_description.hpp
 include/ncbi-tools++/objtools/error_codes.hpp
 include/ncbi-tools++/objtools/format/cigar_formatter.hpp
 include/ncbi-tools++/objtools/format/context.hpp
@@ -3423,6 +3601,8 @@ include/ncbi-tools++/objtools/format/items/wgs_item.hpp
 include/ncbi-tools++/objtools/format/ostream_text_ostream.hpp
 include/ncbi-tools++/objtools/format/sam_formatter.hpp
 include/ncbi-tools++/objtools/format/text_ostream.hpp
+include/ncbi-tools++/objtools/logging/listener.hpp
+include/ncbi-tools++/objtools/logging/message.hpp
 include/ncbi-tools++/objtools/readers/agp_converter.hpp
 include/ncbi-tools++/objtools/readers/agp_read.hpp
 include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp
@@ -3580,8 +3760,11 @@ include/ncbi-tools++/util/bitset/bitset_pool.hpp
 include/ncbi-tools++/util/bitset/bm.h
 include/ncbi-tools++/util/bitset/bmalgo.h
 include/ncbi-tools++/util/bitset/bmalgo_impl.h
+include/ncbi-tools++/util/bitset/bmalgo_similarity.h
 include/ncbi-tools++/util/bitset/bmalloc.h
+include/ncbi-tools++/util/bitset/bmavx2.h
 include/ncbi-tools++/util/bitset/bmblocks.h
+include/ncbi-tools++/util/bitset/bmbuffer.h
 include/ncbi-tools++/util/bitset/bmconst.h
 include/ncbi-tools++/util/bitset/bmdbg.h
 include/ncbi-tools++/util/bitset/bmdef.h
@@ -3590,12 +3773,16 @@ include/ncbi-tools++/util/bitset/bmfwd.h
 include/ncbi-tools++/util/bitset/bmgamma.h
 include/ncbi-tools++/util/bitset/bmrandom.h
 include/ncbi-tools++/util/bitset/bmserial.h
+include/ncbi-tools++/util/bitset/bmsimd.h
 include/ncbi-tools++/util/bitset/bmsparsevec.h
 include/ncbi-tools++/util/bitset/bmsparsevec_algo.h
+include/ncbi-tools++/util/bitset/bmsparsevec_compr.h
 include/ncbi-tools++/util/bitset/bmsparsevec_serial.h
+include/ncbi-tools++/util/bitset/bmsparsevec_util.h
 include/ncbi-tools++/util/bitset/bmsse2.h
 include/ncbi-tools++/util/bitset/bmsse4.h
 include/ncbi-tools++/util/bitset/bmsse_util.h
+include/ncbi-tools++/util/bitset/bmtimer.h
 include/ncbi-tools++/util/bitset/bmtrans.h
 include/ncbi-tools++/util/bitset/bmundef.h
 include/ncbi-tools++/util/bitset/bmutil.h
@@ -3608,6 +3795,7 @@ include/ncbi-tools++/util/bitset/ncbi_bitset_util.hpp
 include/ncbi-tools++/util/bitset/readme
 include/ncbi-tools++/util/buffer_writer.hpp
 include/ncbi-tools++/util/bytesrc.hpp
+include/ncbi-tools++/util/cache/cache_async.hpp
 include/ncbi-tools++/util/cache/cache_ref.hpp
 include/ncbi-tools++/util/cache/icache.hpp
 include/ncbi-tools++/util/cache/icache_cf.hpp
@@ -3649,6 +3837,8 @@ include/ncbi-tools++/util/lightstr.hpp
 include/ncbi-tools++/util/limited_size_map.hpp
 include/ncbi-tools++/util/line_reader.hpp
 include/ncbi-tools++/util/linkedset.hpp
+include/ncbi-tools++/util/lmdb/lmdb.h
+include/ncbi-tools++/util/lmdbxx/lmdb++.h
 include/ncbi-tools++/util/lock_vector.hpp
 include/ncbi-tools++/util/logrotate.hpp
 include/ncbi-tools++/util/mask_regexp.hpp
@@ -3658,6 +3848,7 @@ include/ncbi-tools++/util/math/promote.hpp
 include/ncbi-tools++/util/md5.hpp
 include/ncbi-tools++/util/miscmath.h
 include/ncbi-tools++/util/multi_writer.hpp
+include/ncbi-tools++/util/multipattern_search.hpp
 include/ncbi-tools++/util/mutex_pool.hpp
 include/ncbi-tools++/util/ncbi_cache.hpp
 include/ncbi-tools++/util/ncbi_table.hpp
@@ -3766,6 +3957,8 @@ lib/ncbi-tools++/libdbapi.a
 lib/ncbi-tools++/libdbapi_driver-dll.so
 lib/ncbi-tools++/libdbapi_driver-static.a
 lib/ncbi-tools++/libdbapi_driver.a
+lib/ncbi-tools++/libdbsnp_tooltip_service-static.a
+lib/ncbi-tools++/libdbsnp_tooltip_service.a
 lib/ncbi-tools++/libdocsum-static.a
 lib/ncbi-tools++/libdocsum.a
 lib/ncbi-tools++/libentrez2-static.a
@@ -3806,6 +3999,8 @@ lib/ncbi-tools++/libigblast-static.a
 lib/ncbi-tools++/libigblast.a
 lib/ncbi-tools++/libinsdseq-static.a
 lib/ncbi-tools++/libinsdseq.a
+lib/ncbi-tools++/liblocal_taxon-static.a
+lib/ncbi-tools++/liblocal_taxon.a
 lib/ncbi-tools++/libmacro-static.a
 lib/ncbi-tools++/libmacro.a
 lib/ncbi-tools++/libmedlars-static.a
@@ -3876,6 +4071,8 @@ lib/ncbi-tools++/libremapcli-static.a
 lib/ncbi-tools++/libremapcli.a
 lib/ncbi-tools++/libscoremat-static.a
 lib/ncbi-tools++/libscoremat.a
+lib/ncbi-tools++/libsearchbyrsid-static.a
+lib/ncbi-tools++/libsearchbyrsid.a
 lib/ncbi-tools++/libseq-static.a
 lib/ncbi-tools++/libseq.a
 lib/ncbi-tools++/libseqcode-static.a
@@ -3956,6 +4153,8 @@ lib/ncbi-tools++/libxformat-static.a
 lib/ncbi-tools++/libxformat.a
 lib/ncbi-tools++/libxhtml-static.a
 lib/ncbi-tools++/libxhtml.a
+lib/ncbi-tools++/libxlogging-static.a
+lib/ncbi-tools++/libxlogging.a
 lib/ncbi-tools++/libxncbi-static.a
 lib/ncbi-tools++/libxncbi.a
 lib/ncbi-tools++/libxnetblast-static.a
@@ -3986,3 +4185,4 @@ lib/ncbi-tools++/libxutil-static.a
 lib/ncbi-tools++/libxutil.a
 lib/ncbi-tools++/libxxconnect-static.a
 lib/ncbi-tools++/libxxconnect.a
+@dir include/ncbi-tools++/objtools/data_loaders/genbank/psg