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biology/hyphy: Update to version 2.3.14.16

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This pulls in fixes after the 2.3.14 release.

Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14

Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e
This commit is contained in:
Joseph Mingrone 2018-10-20 12:21:15 +00:00
parent 16e19f6313
commit 6c672c455f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=482495
3 changed files with 11 additions and 5 deletions
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5
biology/hyphy/Makefile
View file

@ -1,7 +1,8 @@
# $FreeBSD$
PORTNAME= hyphy
DISTVERSION= 2.3.13
DISTVERSION= 2.3.14-16
DISTVERSIONSUFFIX= -g3d88d3e6
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@ -18,4 +19,6 @@ USES= compiler:c++14-lang cmake:outsource localbase:ldflags ssl
USE_GITHUB= yes
GH_ACCOUNT= veg
CMAKE_ON= NOAVX
.include <bsd.port.mk>

6
biology/hyphy/distinfo
View file

@ -1,3 +1,3 @@
TIMESTAMP = 1527024059
SHA256 (veg-hyphy-2.3.13_GH0.tar.gz) = 29b72574302c98d38a92d5316b9283caa80a54c3e74c5e278c5bc9ae3d3df499
SIZE (veg-hyphy-2.3.13_GH0.tar.gz) = 7910770
TIMESTAMP = 1540036335
SHA256 (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 459cd0a261ae5f31dc230847acbd294a4dc1e17fa69ef0c3db173c2b8808c826
SIZE (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 8041349

5
biology/hyphy/pkg-plist
View file

@ -237,7 +237,7 @@ lib/hyphy/TemplateBatchFiles/PositiveSelectionLI.bf
lib/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md
lib/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf
lib/hyphy/TemplateBatchFiles/QuickSelectionDetection-MEME-internal.bf
lib/hyphy/TemplateBatchFiles/QuickSelectionDetection.bf
lib/hyphy/TemplateBatchFiles/Deprecated/QuickSelectionDetection.bf
lib/hyphy/TemplateBatchFiles/QuickSelectionDetectionMF.bf
lib/hyphy/TemplateBatchFiles/RateClassCounter.bf
lib/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf
@ -267,6 +267,8 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/BUSTED.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/FADE.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL-NS.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
@ -504,6 +506,7 @@ lib/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf
lib/hyphy/TemplateBatchFiles/libv3/stats.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf
lib/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf