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Add py-biopython, is a collection of Python packages and modules created

Browse source 
by the Biopython Project, intended to provide the basis for building
bioinformatics applications in the Python language.

PR:		ports/20260
Submitted by:	Johann Visagie <johann@egenetics.com>
This commit is contained in:
Neil Blakey-Milner 2000-07-31 12:12:24 +00:00
parent 593657968d
commit 7c7638c998
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=31163
6 changed files with 166 additions and 0 deletions
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1
biology/Makefile
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@ -18,6 +18,7 @@
SUBDIR += platon
SUBDIR += povchem
SUBDIR += psi88
SUBDIR += py-biopython
SUBDIR += rasmol
SUBDIR += seaview
SUBDIR += sim4

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biology/py-biopython/Makefile Normal file
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# New ports collection makefile for: py-biopython
# Date created: 28 July 2000
# Whom: Johann Visagie <johann@egenetics.com>
#
# $FreeBSD$
#
PORTNAME= biopython
PORTVERSION= 0.90.d01
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/Download/
PKGNAMEPREFIX= py-
DISTNAME= biopython-0.90-d01
MAINTAINER= johann@egenetics.com
BUILD_DEPENDS= python:${PORTSDIR}/lang/python \
${LOCALBASE}/lib/python1.5/site-packages/Numeric/Numeric.py:${PORTSDIR}/math/numpy \
${LOCALBASE}/lib/python1.5/site-packages/distutils/core.py:${PORTSDIR}/misc/py-distutils
do-build:
@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py build)
do-install:
@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py install)
.include <bsd.port.mk>

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biology/py-biopython/distinfo Normal file
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@ -0,0 +1 @@
MD5 (biopython-0.90-d01.tar.gz) = 14ccfee8ca4f42ea963a2205b2c631c1

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biology/py-biopython/pkg-comment Normal file
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A collection of Python modules for bioinformatics

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biology/py-biopython/pkg-descr Normal file
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The Biopython Project is an international association of developers of freely
available Python tools for use in areas of computational molecular biology
such as bioinformatics and genomics.
Biopython is a collection of Python packages and modules created by the
Biopython Project, intended to provide the basis for building bioinformatics
applications in the Python language. It is currently in developer's
(pre-alpha) release. Caveat emptor.
WWW: http://www.biopython.org/
-- Johann Visagie <johann@egenetics.com>

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biology/py-biopython/pkg-plist Normal file
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lib/python1.5/site-packages/Bio/__init__.py
lib/python1.5/site-packages/Bio/ParserSupport.py
lib/python1.5/site-packages/Bio/Seq.py
lib/python1.5/site-packages/Bio/Index.py
lib/python1.5/site-packages/Bio/PropertyManager.py
lib/python1.5/site-packages/Bio/File.py
lib/python1.5/site-packages/Bio/Sequence.py
lib/python1.5/site-packages/Bio/utils.py
lib/python1.5/site-packages/Bio/SeqRecord.py
lib/python1.5/site-packages/Bio/SwissProt/__init__.py
lib/python1.5/site-packages/Bio/SwissProt/KeyWList.py
lib/python1.5/site-packages/Bio/SwissProt/SProt.py
lib/python1.5/site-packages/Bio/Blast/__init__.py
lib/python1.5/site-packages/Bio/Blast/NCBIWWW.py
lib/python1.5/site-packages/Bio/Blast/Record.py
lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.py
lib/python1.5/site-packages/Bio/Enzyme/__init__.py
lib/python1.5/site-packages/Bio/Enzyme/Enzyme.py
lib/python1.5/site-packages/Bio/Fasta/__init__.py
lib/python1.5/site-packages/Bio/Fasta/Fasta.py
lib/python1.5/site-packages/Bio/PDB/__init__.py
lib/python1.5/site-packages/Bio/Prosite/__init__.py
lib/python1.5/site-packages/Bio/Prosite/Prosite.py
lib/python1.5/site-packages/Bio/Prosite/Pattern.py
lib/python1.5/site-packages/Bio/Prosite/Prodoc.py
lib/python1.5/site-packages/Bio/Medline/Medline.py
lib/python1.5/site-packages/Bio/Medline/PubMed.py
lib/python1.5/site-packages/Bio/Medline/__init__.py
lib/python1.5/site-packages/Bio/Data/IUPACData.py
lib/python1.5/site-packages/Bio/Data/__init__.py
lib/python1.5/site-packages/Bio/Data/CodonTable.py
lib/python1.5/site-packages/Bio/Entrez/__init__.py
lib/python1.5/site-packages/Bio/Tools/mathfns.py
lib/python1.5/site-packages/Bio/Tools/__init__.py
lib/python1.5/site-packages/Bio/Tools/Transcribe.py
lib/python1.5/site-packages/Bio/Tools/listfns.py
lib/python1.5/site-packages/Bio/Tools/stringfns.py
lib/python1.5/site-packages/Bio/Tools/Translate.py
lib/python1.5/site-packages/Bio/Tools/Classification/__init__.py
lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.py
lib/python1.5/site-packages/Bio/Tools/Classification/SVM.py
lib/python1.5/site-packages/Bio/Tools/Classification/kNN.py
lib/python1.5/site-packages/Bio/WWW/__init__.py
lib/python1.5/site-packages/Bio/WWW/NCBI.py
lib/python1.5/site-packages/Bio/WWW/ExPASy.py
lib/python1.5/site-packages/Bio/WWW/SCOP.py
lib/python1.5/site-packages/Bio/Alphabet/__init__.py
lib/python1.5/site-packages/Bio/Alphabet/IUPAC.py
lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.py
lib/python1.5/site-packages/Bio/Encodings/__init__.py
lib/python1.5/site-packages/Bio/SeqIO/__init__.py
lib/python1.5/site-packages/Bio/SeqIO/FASTA.py
lib/python1.5/site-packages/Bio/PDB/__init__.pyc
lib/python1.5/site-packages/Bio/WWW/__init__.pyc
lib/python1.5/site-packages/Bio/WWW/NCBI.pyc
lib/python1.5/site-packages/Bio/WWW/ExPASy.pyc
lib/python1.5/site-packages/Bio/WWW/SCOP.pyc
lib/python1.5/site-packages/Bio/Data/IUPACData.pyc
lib/python1.5/site-packages/Bio/Data/__init__.pyc
lib/python1.5/site-packages/Bio/Data/CodonTable.pyc
lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.pyc
lib/python1.5/site-packages/Bio/Encodings/__init__.pyc
lib/python1.5/site-packages/Bio/__init__.pyc
lib/python1.5/site-packages/Bio/Blast/__init__.pyc
lib/python1.5/site-packages/Bio/Blast/NCBIWWW.pyc
lib/python1.5/site-packages/Bio/Blast/Record.pyc
lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.pyc
lib/python1.5/site-packages/Bio/SeqIO/__init__.pyc
lib/python1.5/site-packages/Bio/SeqIO/FASTA.pyc
lib/python1.5/site-packages/Bio/ParserSupport.pyc
lib/python1.5/site-packages/Bio/Medline/Medline.pyc
lib/python1.5/site-packages/Bio/Medline/PubMed.pyc
lib/python1.5/site-packages/Bio/Medline/__init__.pyc
lib/python1.5/site-packages/Bio/Tools/mathfns.pyc
lib/python1.5/site-packages/Bio/Tools/__init__.pyc
lib/python1.5/site-packages/Bio/Tools/Transcribe.pyc
lib/python1.5/site-packages/Bio/Tools/listfns.pyc
lib/python1.5/site-packages/Bio/Tools/stringfns.pyc
lib/python1.5/site-packages/Bio/Tools/Translate.pyc
lib/python1.5/site-packages/Bio/Tools/Classification/__init__.pyc
lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.pyc
lib/python1.5/site-packages/Bio/Tools/Classification/SVM.pyc
lib/python1.5/site-packages/Bio/Tools/Classification/kNN.pyc
lib/python1.5/site-packages/Bio/Seq.pyc
lib/python1.5/site-packages/Bio/Index.pyc
lib/python1.5/site-packages/Bio/SwissProt/__init__.pyc
lib/python1.5/site-packages/Bio/SwissProt/KeyWList.pyc
lib/python1.5/site-packages/Bio/SwissProt/SProt.pyc
lib/python1.5/site-packages/Bio/Fasta/__init__.pyc
lib/python1.5/site-packages/Bio/Fasta/Fasta.pyc
lib/python1.5/site-packages/Bio/Alphabet/__init__.pyc
lib/python1.5/site-packages/Bio/Alphabet/IUPAC.pyc
lib/python1.5/site-packages/Bio/PropertyManager.pyc
lib/python1.5/site-packages/Bio/File.pyc
lib/python1.5/site-packages/Bio/Sequence.pyc
lib/python1.5/site-packages/Bio/utils.pyc
lib/python1.5/site-packages/Bio/Entrez/__init__.pyc
lib/python1.5/site-packages/Bio/Enzyme/__init__.pyc
lib/python1.5/site-packages/Bio/Enzyme/Enzyme.pyc
lib/python1.5/site-packages/Bio/SeqRecord.pyc
lib/python1.5/site-packages/Bio/Prosite/__init__.pyc
lib/python1.5/site-packages/Bio/Prosite/Prosite.pyc
lib/python1.5/site-packages/Bio/Prosite/Pattern.pyc
lib/python1.5/site-packages/Bio/Prosite/Prodoc.pyc
lib/python1.5/site-packages/Bio/Tools/Classification/cSVM.so
lib/python1.5/site-packages/Bio/Tools/clistfns.so
lib/python1.5/site-packages/Bio/Tools/cmathfns.so
lib/python1.5/site-packages/Bio/Tools/cstringfns.so
@dirrm lib/python1.5/site-packages/Bio/WWW
@dirrm lib/python1.5/site-packages/Bio/Tools/Classification
@dirrm lib/python1.5/site-packages/Bio/Tools
@dirrm lib/python1.5/site-packages/Bio/SwissProt
@dirrm lib/python1.5/site-packages/Bio/SeqIO
@dirrm lib/python1.5/site-packages/Bio/Prosite
@dirrm lib/python1.5/site-packages/Bio/PDB
@dirrm lib/python1.5/site-packages/Bio/Medline
@dirrm lib/python1.5/site-packages/Bio/Fasta
@dirrm lib/python1.5/site-packages/Bio/Enzyme
@dirrm lib/python1.5/site-packages/Bio/Entrez
@dirrm lib/python1.5/site-packages/Bio/Encodings
@dirrm lib/python1.5/site-packages/Bio/Data
@dirrm lib/python1.5/site-packages/Bio/Blast
@dirrm lib/python1.5/site-packages/Bio/Alphabet
@dirrm lib/python1.5/site-packages/Bio