New port: science/clipper: Libraries for the organisation of crystallographic data

This commit is contained in:
Yuri Victorovich 2018-07-08 01:27:10 +00:00
parent 2e64ad29aa
commit 7ed399787c
Notes: svn2git 2021-03-31 03:12:20 +00:00
svn path=/head/; revision=474150
5 changed files with 145 additions and 0 deletions

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@ -44,6 +44,7 @@
SUBDIR += chemtool
SUBDIR += chemtool-devel
SUBDIR += clhep
SUBDIR += clipper
SUBDIR += colt
SUBDIR += crf++
SUBDIR += dcl

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science/clipper/Makefile Normal file
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# $FreeBSD$
PORTNAME= clipper
DISTVERSION= 2.1.20180526
CATEGORIES= science
MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/
MAINTAINER= yuri@FreeBSD.org
COMMENT= Libraries for the organisation of crystallographic data
LICENSE= LGPL3
LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libccp4c.so:science/libccp4 \
libmmdb2.so:science/mmdb2 \
libsfftw.so:math/fftw-float
USES= fortran gmake libtool localbase:ldflags
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-shared --disable-static \
--enable-phs --enable-cns --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-fortran
USE_LDCONFIG= yes
WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION:C/\.[0-9]+$//}
.include <bsd.port.mk>

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science/clipper/distinfo Normal file
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TIMESTAMP = 1531010900
SHA256 (clipper-2.1.20180526.tar.gz) = 7b77d5c79078eb0ce94ea503c0346c799c44a2872dfd14b09abc404025003c4b
SIZE (clipper-2.1.20180526.tar.gz) = 3007665

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The aim of the project is to produce a set of object-oriented libraries for the
organisation of crystallographic data and the performance of crystallographic
computation. The libraries are designed as a framework for new crystallographic
software, which will allow the full power of modern programming techniques to be
exploited by the developer. This will lead to greater functionality from simpler
code which will be easier to develop and debug.
WWW: https://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html

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science/clipper/pkg-plist Normal file
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include/clipper/ccp4/ccp4_map_io.h
include/clipper/ccp4/ccp4_mtz_io.h
include/clipper/ccp4/ccp4_mtz_types.h
include/clipper/ccp4/ccp4_utils.h
include/clipper/cif/cif_data_io.h
include/clipper/clipper-ccp4.h
include/clipper/clipper-cctbx.h
include/clipper/clipper-cif.h
include/clipper/clipper-cns.h
include/clipper/clipper-contrib.h
include/clipper/clipper-minimol.h
include/clipper/clipper-mmdb.h
include/clipper/clipper-phs.h
include/clipper/clipper.h
include/clipper/cns/cns_hkl_io.h
include/clipper/cns/cns_map_io.h
include/clipper/contrib/convolution_search.h
include/clipper/contrib/edcalc.h
include/clipper/contrib/fffear.h
include/clipper/contrib/function_object_bases.h
include/clipper/contrib/mapfilter.h
include/clipper/contrib/originmatch.h
include/clipper/contrib/sfcalc.h
include/clipper/contrib/sfcalc_obs.h
include/clipper/contrib/sfscale.h
include/clipper/contrib/sfweight.h
include/clipper/contrib/skeleton.h
include/clipper/contrib/test_contrib.h
include/clipper/core/atomsf.h
include/clipper/core/cell.h
include/clipper/core/clipper_instance.h
include/clipper/core/clipper_memory.h
include/clipper/core/clipper_message.h
include/clipper/core/clipper_precision.h
include/clipper/core/clipper_stats.h
include/clipper/core/clipper_sysdep.h
include/clipper/core/clipper_test.h
include/clipper/core/clipper_thread.h
include/clipper/core/clipper_types.h
include/clipper/core/clipper_util.h
include/clipper/core/container.h
include/clipper/core/container_hkl.h
include/clipper/core/container_map.h
include/clipper/core/container_types.h
include/clipper/core/coords.h
include/clipper/core/derivs.h
include/clipper/core/fftmap.h
include/clipper/core/fftmap_sparse.h
include/clipper/core/hkl_compute.h
include/clipper/core/hkl_data.h
include/clipper/core/hkl_datatypes.h
include/clipper/core/hkl_info.h
include/clipper/core/hkl_lookup.h
include/clipper/core/hkl_operators.h
include/clipper/core/map_interp.h
include/clipper/core/map_utils.h
include/clipper/core/nxmap.h
include/clipper/core/nxmap_operator.h
include/clipper/core/ramachandran.h
include/clipper/core/resol_basisfn.h
include/clipper/core/resol_fn.h
include/clipper/core/resol_targetfn.h
include/clipper/core/rotation.h
include/clipper/core/spacegroup.h
include/clipper/core/spacegroup_data.h
include/clipper/core/symop.h
include/clipper/core/test_core.h
include/clipper/core/test_data.h
include/clipper/core/xmap.h
include/clipper/minimal-clipper-hkl.h
include/clipper/minimal-clipper-map.h
include/clipper/minimol/container_minimol.h
include/clipper/minimol/minimol.h
include/clipper/minimol/minimol_data.h
include/clipper/minimol/minimol_io.h
include/clipper/minimol/minimol_seq.h
include/clipper/minimol/minimol_utils.h
include/clipper/mmdb/clipper_mmdb.h
include/clipper/phs/phs_io.h
lib/libclipper-ccp4.so
lib/libclipper-ccp4.so.2
lib/libclipper-ccp4.so.2.0.1
lib/libclipper-cif.so
lib/libclipper-cif.so.2
lib/libclipper-cif.so.2.0.1
lib/libclipper-cns.so
lib/libclipper-cns.so.2
lib/libclipper-cns.so.2.0.1
lib/libclipper-contrib.so
lib/libclipper-contrib.so.2
lib/libclipper-contrib.so.2.0.1
lib/libclipper-core.so
lib/libclipper-core.so.2
lib/libclipper-core.so.2.0.1
lib/libclipper-fortran.so
lib/libclipper-fortran.so.2
lib/libclipper-fortran.so.2.0.1
lib/libclipper-minimol.so
lib/libclipper-minimol.so.2
lib/libclipper-minimol.so.2.0.1
lib/libclipper-mmdb.so
lib/libclipper-mmdb.so.2
lib/libclipper-mmdb.so.2.0.1
lib/libclipper-phs.so
lib/libclipper-phs.so.2
lib/libclipper-phs.so.2.0.1
libdata/pkgconfig/clipper.pc