kpriv
/
freebsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

biology/iqtree: Update to 2.2.2.7 

Changes:	https://github.com/iqtree/iqtree2/releases/tag/v2.2.2.7
Sponsored by:	The FreeBSD Foundation
This commit is contained in:
Joseph Mingrone 2023-09-03 23:05:51 -03:00
parent 3c54188599
commit 8a1ec0de6b
No known key found for this signature in database
GPG Key ID: 36A40C83B0D6EF9E
3 changed files with 16 additions and 14 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
biology/iqtree/Makefile
View File

@ -1,7 +1,6 @@
PORTNAME= iqtree
DISTVERSIONPREFIX= v
DISTVERSION= 2.0.6
PORTREVISION= 5
DISTVERSION= 2.2.2.7
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@ -19,13 +18,14 @@ BROKEN_powerpc64= fails to build: GCC version must be at least 4.8!
LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs
USES= cmake compiler:c++11-lang eigen:3
USES= cmake eigen:3
USE_GITHUB= yes
GH_ACCOUNT= Cibiv
GH_PROJECT= IQ-TREE
GH_PROJECT= iqtree2
GH_TUPLE= tothuhien:lsd2:26ba127:iqtree2/lsd2
PLIST_FILES= bin/iqtree
PORTEXAMPLES= example.cf example.nex example.phy models.nex
PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \
models.nex tree.nwk
OPTIONS_DEFINE= EXAMPLES

8
biology/iqtree/distinfo
View File

@ -1,3 +1,5 @@
TIMESTAMP = 1590834014
SHA256 (Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz) = 64cdad4a9aff7cbeb27512c0127c4e85fb7f2a5dee51adc9109143fb6191a42e
SIZE (Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz) = 5265191
TIMESTAMP = 1693790511
SHA256 (iqtree-iqtree2-v2.2.2.7_GH0.tar.gz) = 407a1a56d352ba9c2152a1d708cd29db872a41c252fbdc7acd8e0de0da8af008
SIZE (iqtree-iqtree2-v2.2.2.7_GH0.tar.gz) = 6088089
SHA256 (tothuhien-lsd2-26ba127_GH0.tar.gz) = 63226da0e326d9fc47c54e8e380d48e51e923ccc25bd7f286d49b9f49028d1c4
SIZE (tothuhien-lsd2-26ba127_GH0.tar.gz) = 1079490

10
biology/iqtree/files/patch-CMakeLists.txt
View File

@ -1,9 +1,9 @@
--- CMakeLists.txt.orig 2021-01-11 20:50:45 UTC
--- CMakeLists.txt.orig 2023-09-05 01:20:58 UTC
+++ CMakeLists.txt
@@ -323,7 +323,7 @@ if (NOT IQTREE_FLAGS MATCHES "single")
if(CLANG AND APPLE)
link_directories(${PROJECT_SOURCE_DIR}/libmac)
@@ -398,7 +398,7 @@ if (NOT IQTREE_FLAGS MATCHES "single")
else()
link_directories(${PROJECT_SOURCE_DIR}/libmac)
endif()
- elseif (WIN32 OR UNIX)
+ elseif (WIN32 OR UNIX AND NOT ${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD")
if (BINARY32)