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- Update to 1.0.0

Browse source 
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:		ports/82154
Submitted by:	George Hartzell <hartzell@alerce.com>
Approved by:	maintainer
This commit is contained in:
Patrick Li 2005-06-13 04:31:34 +00:00
parent d97c665e19
commit 9480dee06a
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=137383
3 changed files with 365 additions and 368 deletions
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16
biology/primer3/Makefile
View file

@ -6,20 +6,17 @@
#
PORTNAME= primer3
PORTVERSION= 0.9
PORTVERSION= 1.0.0
CATEGORIES= biology
MASTER_SITES= http://frodo.wi.mit.edu/primer3/
DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/}_test
DISTNAME= ${PORTNAME}_${PORTVERSION}
MAINTAINER= tonym@biolateral.com.au
COMMENT= Primer3 helps to choose primers for PCR reactions
USE_REINPLACE= yes
WRKSRC= ${WRKDIR}/${DISTNAME}/src
CPIO= cpio --quiet -pdum -R
DOCUMENTS= README example
CGI_EXAMPLES= primer3_www.cgi primer3_www_help.html \
primer3_www_results.cgi primer3_www_results_help.html
post-patch:
@${REINPLACE_CMD} \
@ -33,18 +30,15 @@ do-install:
@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
@${MKDIR} ${DATADIR}
@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright ${DATADIR}
.for file in ${CGI_EXAMPLES}
@${INSTALL_DATA} ${WRKSRC}/${file} ${DATADIR}
.endfor
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
.for file in ${DOCUMENTS}
@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/${file} ${DOCSDIR}
.endfor
@${RMDIR} ${WRKDIR}/${DISTNAME}/test/primer*_list_tmp
@${RM} -rf ${WRKDIR}/${DISTNAME}/test/primer*_list_tmp
@${MKDIR} ${EXAMPLESDIR}
@cd ${WRKDIR}/${DISTNAME}/test && ${FIND} * | \
${CPIO} ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}
@cd ${WRKDIR}/${DISTNAME}/test && ${FIND} * | ${CPIO} --quiet \
-pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}
.endif
post-install:

4
biology/primer3/distinfo
View file

@ -1,2 +1,2 @@
MD5 (primer3_0_9_test.tar.gz) = 1ae09013c982eb67953cc4dd5b837088
SIZE (primer3_0_9_test.tar.gz) = 948375
MD5 (primer3_1.0.0.tar.gz) = 58605ee607f6218a2a775345b10d15fa
SIZE (primer3_1.0.0.tar.gz) = 936696

713
biology/primer3/pkg-plist
View file

@ -1,358 +1,361 @@
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/example
%%PORTDOCS%%share/examples/primer3/dpal_gen.pl
%%PORTDOCS%%share/examples/primer3/dpal_input
%%PORTDOCS%%share/examples/primer3/dpal_long_input
%%PORTDOCS%%share/examples/primer3/dpal_long_score_output
%%PORTDOCS%%share/examples/primer3/dpal_output
%%PORTDOCS%%share/examples/primer3/dpal_score_output
%%PORTDOCS%%share/examples/primer3/dpal_test.pl
%%PORTDOCS%%share/examples/primer3/long_seq_input
%%PORTDOCS%%share/examples/primer3/long_seq_output
%%PORTDOCS%%share/examples/primer3/not_for_production.lib
%%PORTDOCS%%share/examples/primer3/primer1_input
%%PORTDOCS%%share/examples/primer3/primer1_list_last/AGAG.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/AGAG.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-02.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-02.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-03.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-03.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-06.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-06.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-19.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-19.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-21.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-21.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP04-07.txt.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP04-07.txt.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.int
%%PORTDOCS%%share/examples/primer3/primer1_list_last/long_seq.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/long_seq.rev
%%PORTDOCS%%share/examples/primer3/primer1_list_last/targets_test.for
%%PORTDOCS%%share/examples/primer3/primer1_list_last/targets_test.rev
%%PORTDOCS%%share/examples/primer3/primer1_output
%%PORTDOCS%%share/examples/primer3/primer_boundary1_formated_output
%%PORTDOCS%%share/examples/primer3/primer_boundary1_input
%%PORTDOCS%%share/examples/primer3/primer_boundary1_output
%%PORTDOCS%%share/examples/primer3/primer_boundary_formated_output
%%PORTDOCS%%share/examples/primer3/primer_boundary_input
%%PORTDOCS%%share/examples/primer3/primer_boundary_output
%%PORTDOCS%%share/examples/primer3/primer_check_input
%%PORTDOCS%%share/examples/primer3/primer_check_output
%%PORTDOCS%%share/examples/primer3/primer_end_pathology_input
%%PORTDOCS%%share/examples/primer3/primer_end_pathology_output
%%PORTDOCS%%share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_dna_conc.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_4.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_4.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_salt_conc.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_product_size.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/gc_clamp_min_size.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/incorrect_task.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_gc_content_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_limit_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/min_opt_tm.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/min_opt_tm_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/mishyb_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/mispr_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/no=.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/no_terminal=.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_min_size.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_min_size_int.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/pair_mispr.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/pr_gc_content_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/product_size_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/product_tm_obj_fn.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err4.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err5.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err6.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err4.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err5.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err6.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality1.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality2.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality3.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality4.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/too_many_product_sizes.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/zero_min_size.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/zero_num_return.in
%%PORTDOCS%%share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_dna_conc.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_4.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_4.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_salt_conc.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_product_size.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/gc_clamp_min_size.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/incorrect_task.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_gc_content_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_limit_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/min_opt_tm.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/min_opt_tm_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/mishyb_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/mispr_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/no=.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/no_terminal=.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_min_size.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_min_size_int.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/pair_mispr.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/pr_gc_content_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/product_size_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/product_tm_obj_fn.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err4.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err5.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err6.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err4.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err5.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err6.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality1.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality2.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality3.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/seq_quality4.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/too_many_product_sizes.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/zero_min_size.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/zero_num_return.out
%%PORTDOCS%%share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_1.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_dna_conc.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_1.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_2.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_3.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_4.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_2.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_3.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_1.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_2.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_3.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_1.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_2.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_3.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_4.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_salt_conc.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_any_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_1.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_product_size.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/gc_clamp_min_size.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/incorrect_task.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_gc_content_obj_fn.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/io_obj_fn.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_min_tm_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_opt_tm_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_limit_int.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/max_size_min_product_int.out2
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%%PORTDOCS%%share/examples/primer3/primer_global_err/mispr_obj_fn.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/no=.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/no_terminal=.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/opt_max_size_int.out2
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%%PORTDOCS%%share/examples/primer3/primer_global_err/pair_mispr.out2
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%%PORTDOCS%%share/examples/primer3/primer_global_err/product_size_obj_fn.out2
%%PORTDOCS%%share/examples/primer3/primer_global_err/product_tm_obj_fn.out2
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%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_err1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal=.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary1_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary2_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_long_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib1
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib2
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib3
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib4
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib5
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib6
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_output
bin/primer3
share/primer3/Copyright
share/primer3/primer3_www.cgi
share/primer3/primer3_www_help.html
share/primer3/primer3_www_results.cgi
share/primer3/primer3_www_results_help.html
@dirrm share/primer3
%%PORTDOCS%%@dirrm %%DOCSDIR%%/
%%PORTDOCS%%@dirrm share/examples/primer3/primer1_list_last
%%PORTDOCS%%@dirrm share/examples/primer3/primer_global_err
%%PORTDOCS%%@dirrm share/examples/primer3/primer_list_last
%%PORTDOCS%%@dirrm share/examples/primer3/
%%DATADIR%%/Copyright
@dirrm %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer1_list_last
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_global_err
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_list_last
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%