New port: science/PETSc: Suite of data structures and routines from Argonne National Laboratory
Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13527
This commit is contained in:
Yuri Victorovich
parent
80c876d85e
commit
97f90d255e
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=456696
6 changed files with 311 additions and 0 deletions
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@ -6,6 +6,7 @@
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SUBDIR += 2d-rewriter
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SUBDIR += ALPSCore
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SUBDIR += InsightToolkit
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SUBDIR += PETSc
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SUBDIR += R-cran-AMORE
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SUBDIR += R-cran-DCluster
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SUBDIR += R-cran-Epi
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39
science/PETSc/Makefile
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39
science/PETSc/Makefile
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@ -0,0 +1,39 @@
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# Created by: Yuri Victorovich <yuri@FreeBSD.org>
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# $FreeBSD$
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PORTNAME= PETSc
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DISTVERSION= 3.8.3
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CATEGORIES= science devel
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MASTER_SITES= http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
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DISTNAME= ${PORTNAME:tl}-${DISTVERSION}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Suite of data structures and routines from Argonne National Laboratory
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LICENSE= BSD2CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libmpich.so:net/mpich2
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USES= blaslapack fortran gmake python shebangfix
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --with-shared-libraries=1 \
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--with-mpi-dir=${LOCALBASE} \
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CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" CPPFLAGS="${CPPFLAGS}" \
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LDFLAGS="${LDFLAGS}" LIBS=""
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USE_XORG= x11
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MAKEFILE= makefile
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SHEBANG_FILES= bin/*.py bin/popup bin/saws/SAWs.py bin/saws/*.bash bin/sendToJenkins
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USE_LDCONFIG= yes
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BINARY_ALIAS= python=${PYTHON_CMD}
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DATADIR= ${PREFIX}/share/${PORTNAME:tl}
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PLIST_SUB= SHLIB=${DISTVERSION} SHL=${DISTVERSION:C/\.[0-9]$//}
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpetsc.so.${DISTVERSION}
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@${FIND} ${STAGEDIR}${PREFIX} \( -name "*.html" -o -name "*.mod" \) -delete
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@cd ${STAGEDIR}${PREFIX} && ${RM} -r bin/win32fe bin/uncrustify.cfg lib/petsc
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@${RM} -r ${STAGEDIR}${DATADIR}/examples # examples are a mess as installed
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.include <bsd.port.mk>
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3
science/PETSc/distinfo
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3
science/PETSc/distinfo
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@ -0,0 +1,3 @@
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TIMESTAMP = 1513506952
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SHA256 (petsc-3.8.3.tar.gz) = 01f9c3ed937eafac6c9e006510b61c7cd07197115ec40c429fc835f346ca3eac
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SIZE (petsc-3.8.3.tar.gz) = 27931992
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11
science/PETSc/files/patch-makefile
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11
science/PETSc/files/patch-makefile
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@ -0,0 +1,11 @@
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--- makefile.orig 2017-12-18 03:43:13 UTC
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+++ makefile
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@@ -277,7 +277,7 @@ reconfigure:
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@${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py
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#
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install:
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- @${PYTHON} ./config/install.py -destDir=${DESTDIR}
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+ @${PYTHON} ./config/install.py -destDir=${DESTDIR}${PREFIX}
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${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} mpi4py-install petsc4py-install
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newall:
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7
science/PETSc/pkg-descr
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7
science/PETSc/pkg-descr
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A suite of data structures and routines for the scalable (parallel) solution of
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scientific applications modeled by partial differential equations. It supports
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MPI, and GPUs through CUDA or OpenCL, as well as hybrid MPI-GPU parallelism.
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PETSc (sometimes called PETSc/Tao) also contains the Tao optimization software
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library.
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WWW: http://www.mcs.anl.gov/petsc
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250
science/PETSc/pkg-plist
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250
science/PETSc/pkg-plist
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@ -0,0 +1,250 @@
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bin/FASTMathInstaller.py
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bin/PetscBinaryIO.py
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bin/PetscBinaryIOTrajectory.py
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bin/PetscBinaryIO_tests.py
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bin/TOPSGenerator.py
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bin/adiforfix.py
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bin/configVars.py
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bin/parseargs.py
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bin/petsc-mpiexec.uni
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bin/petsc_conf.py
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bin/petsc_gen_xdmf.py
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bin/petscdiff
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bin/petsclogformat.py
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bin/petscmpiexec
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bin/petscnagupgrade.py
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bin/popup
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bin/portabilitycheck.py
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bin/saws/SAWs.py
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bin/saws/getSAWs.bash
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bin/saws/getStack.bash
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bin/sendToJenkins
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bin/taucc.py
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bin/update.py
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include/petsc.h
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include/petsc/finclude/petsc.h
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include/petsc/finclude/petscao.h
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include/petsc/finclude/petscbag.h
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include/petsc/finclude/petscdm.h
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include/petsc/finclude/petscdmda.h
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include/petsc/finclude/petscdmlabel.h
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include/petsc/finclude/petscdmnetwork.h
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include/petsc/finclude/petscdmplex.h
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include/petsc/finclude/petscdraw.h
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include/petsc/finclude/petscerror.h
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include/petsc/finclude/petscis.h
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include/petsc/finclude/petscksp.h
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include/petsc/finclude/petsclog.h
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include/petsc/finclude/petscmat.h
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include/petsc/finclude/petscpc.h
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include/petsc/finclude/petscsnes.h
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include/petsc/finclude/petscsnesfas.h
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include/petsc/finclude/petscsys.h
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include/petsc/finclude/petsctao.h
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include/petsc/finclude/petscts.h
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include/petsc/finclude/petscvec.h
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include/petsc/finclude/petscviewer.h
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include/petsc/mpiuni/mpi.h
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include/petsc/mpiuni/mpif.h
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include/petsc/mpiuni/mpiunifdef.h
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include/petsc/private/bagimpl.h
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include/petsc/private/characteristicimpl.h
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include/petsc/private/dmdaimpl.h
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include/petsc/private/dmforestimpl.h
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include/petsc/private/dmimpl.h
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include/petsc/private/dmlabelimpl.h
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include/petsc/private/dmmbimpl.h
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include/petsc/private/dmnetworkimpl.h
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include/petsc/private/dmpatchimpl.h
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include/petsc/private/dmpleximpl.h
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include/petsc/private/dmswarmimpl.h
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include/petsc/private/drawimpl.h
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include/petsc/private/dtimpl.h
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include/petsc/private/f90impl.h
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include/petsc/private/fortranimpl.h
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include/petsc/private/glvisvecimpl.h
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include/petsc/private/glvisviewerimpl.h
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include/petsc/private/hash.h
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include/petsc/private/isimpl.h
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include/petsc/private/kernels/blockinvert.h
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include/petsc/private/kernels/blockmatmult.h
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include/petsc/private/kernels/blocktranspose.h
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include/petsc/private/kernels/petscaxpy.h
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include/petsc/private/kspimpl.h
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include/petsc/private/linesearchimpl.h
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include/petsc/private/logimpl.h
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include/petsc/private/matimpl.h
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include/petsc/private/matorderimpl.h
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include/petsc/private/pcgamgimpl.h
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include/petsc/private/pcimpl.h
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include/petsc/private/pcmgimpl.h
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include/petsc/private/petscconvestimpl.h
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include/petsc/private/petscdsimpl.h
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include/petsc/private/petscfeimpl.h
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include/petsc/private/petscfptimpl.h
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include/petsc/private/petscfvimpl.h
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include/petsc/private/petscimpl.h
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include/petsc/private/sfimpl.h
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include/petsc/private/snesimpl.h
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include/petsc/private/taoimpl.h
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include/petsc/private/taolinesearchimpl.h
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include/petsc/private/tsimpl.h
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include/petsc/private/vecimpl.h
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include/petsc/private/viewerimpl.h
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include/petscao.h
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include/petscbag.h
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include/petscblaslapack.h
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include/petscblaslapack_mangle.h
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include/petscblaslapack_stdcall.h
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include/petscbt.h
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include/petsccharacteristic.h
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include/petscconf.h
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include/petscconfiginfo.h
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include/petscconvest.h
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include/petscctable.h
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include/petsccuda.h
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include/petsccusp.h
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include/petscdm.h
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include/petscdmcomposite.h
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include/petscdmda.h
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include/petscdmdatypes.h
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include/petscdmforest.h
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include/petscdmlabel.h
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include/petscdmmoab.h
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include/petscdmnetwork.h
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include/petscdmpatch.h
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include/petscdmplex.h
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include/petscdmredundant.h
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include/petscdmshell.h
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include/petscdmsliced.h
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include/petscdmswarm.h
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include/petscdmtypes.h
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include/petscdraw.h
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include/petscdrawtypes.h
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include/petscds.h
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include/petscdstypes.h
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include/petscdt.h
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include/petscerror.h
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include/petscfe.h
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include/petscfetypes.h
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include/petscfix.h
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include/petscfv.h
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include/petscfvtypes.h
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include/petscgll.h
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include/petscis.h
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include/petscistypes.h
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include/petscksp.h
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include/petsclog.h
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include/petscmachineinfo.h
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include/petscmat.h
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include/petscmatcoarsen.h
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include/petscmatelemental.h
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include/petscmath.h
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include/petscmathypre.h
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include/petscmatlab.h
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include/petscoptions.h
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include/petscpc.h
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include/petscpctypes.h
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include/petscpf.h
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include/petscsf.h
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include/petscsftypes.h
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include/petscsnes.h
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include/petscsys.h
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include/petsctao.h
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include/petsctaolinesearch.h
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include/petsctime.h
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include/petscts.h
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include/petscvalgrind.h
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include/petscvec.h
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include/petscversion.h
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include/petscviennacl.h
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include/petscviewer.h
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include/petscviewerhdf5.h
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include/petscviewersaws.h
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include/petscviewertypes.h
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include/petscwebclient.h
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lib/libpetsc.so
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lib/libpetsc.so.%%SHL%%
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lib/libpetsc.so.%%SHLIB%%
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libdata/pkgconfig/PETSc.pc
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%%DATADIR%%/datafiles/matrices/amesos2_test_mat0.mtx
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%%DATADIR%%/datafiles/matrices/hpd-complex-int32-float32
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%%DATADIR%%/datafiles/matrices/hpd-complex-int32-float64
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%%DATADIR%%/datafiles/matrices/hpd-complex-int64-float32
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%%DATADIR%%/datafiles/matrices/hpd-complex-int64-float64
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%%DATADIR%%/datafiles/matrices/nh-complex-int32-float32
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%%DATADIR%%/datafiles/matrices/nh-complex-int32-float64
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%%DATADIR%%/datafiles/matrices/nh-complex-int64-float32
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%%DATADIR%%/datafiles/matrices/nh-complex-int64-float64
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%%DATADIR%%/datafiles/matrices/ns-real-int32-float32
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%%DATADIR%%/datafiles/matrices/ns-real-int32-float64
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%%DATADIR%%/datafiles/matrices/ns-real-int64-float32
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%%DATADIR%%/datafiles/matrices/ns-real-int64-float64
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%%DATADIR%%/datafiles/matrices/spd-real-int32-float128
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%%DATADIR%%/datafiles/matrices/spd-real-int32-float32
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%%DATADIR%%/datafiles/matrices/spd-real-int32-float64
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%%DATADIR%%/datafiles/matrices/spd-real-int64-float32
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%%DATADIR%%/datafiles/matrices/spd-real-int64-float64
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%%DATADIR%%/datafiles/meshes/2Dgrd.exo
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%%DATADIR%%/datafiles/meshes/Rect-tri3.exo
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%%DATADIR%%/datafiles/meshes/annulus-20.exo
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%%DATADIR%%/datafiles/meshes/blockcylinder-50.exo
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%%DATADIR%%/datafiles/meshes/cow.msh
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%%DATADIR%%/datafiles/meshes/cube_5tets.cas
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%%DATADIR%%/datafiles/meshes/cube_5tets_ascii.cas
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%%DATADIR%%/datafiles/meshes/cylinder.med
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%%DATADIR%%/datafiles/meshes/doublet-tet.msh
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%%DATADIR%%/datafiles/meshes/grid_c.cgns
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%%DATADIR%%/datafiles/meshes/horse.ply.bz2
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%%DATADIR%%/datafiles/meshes/sevenside-quad-15.exo
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%%DATADIR%%/datafiles/meshes/sevenside-quad.exo
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%%DATADIR%%/datafiles/meshes/sevenside.exo
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%%DATADIR%%/datafiles/meshes/simpleblock-100.exo
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%%DATADIR%%/datafiles/meshes/square.cas
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%%DATADIR%%/datafiles/meshes/square.med
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%%DATADIR%%/datafiles/meshes/square.msh
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%%DATADIR%%/datafiles/meshes/square_bin.msh
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%%DATADIR%%/datafiles/meshes/square_bin_physnames.msh
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%%DATADIR%%/datafiles/meshes/square_quad.msh
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%%DATADIR%%/datafiles/meshes/squaremotor-30.exo
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%%DATADIR%%/datafiles/meshes/texas.msh
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%%DATADIR%%/datafiles/meshes/tut21.cgns
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%%DATADIR%%/matlab/@PetscOpenFile/PetscOpenFile.m
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%%DATADIR%%/matlab/@PetscOpenFile/close.m
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%%DATADIR%%/matlab/@PetscOpenFile/read.m
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%%DATADIR%%/matlab/@PetscOpenFile/write.m
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%%DATADIR%%/matlab/@PetscOpenSocket/PetscOpenSocket.m
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%%DATADIR%%/matlab/@PetscOpenSocket/close.m
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%%DATADIR%%/matlab/@PetscOpenSocket/read.m
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%%DATADIR%%/matlab/@PetscOpenSocket/write.m
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%%DATADIR%%/matlab/PetscBagRead.m
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%%DATADIR%%/matlab/PetscBinaryRead.m
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%%DATADIR%%/matlab/PetscBinaryWrite.m
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%%DATADIR%%/matlab/PetscReadBinaryMatlab.m
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%%DATADIR%%/matlab/PetscReadBinaryTrajectory.m
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%%DATADIR%%/matlab/UFgetPetscMat.m
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%%DATADIR%%/matlab/generatePetscTestFiles.m
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%%DATADIR%%/matlab/generatehtml.m
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%%DATADIR%%/matlab/laplacian.m
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%%DATADIR%%/matlab/laplacianlicense.txt
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%%DATADIR%%/matlab/launch.m
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%%DATADIR%%/saws/documentation
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%%DATADIR%%/saws/images/arrow.png
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%%DATADIR%%/saws/images/transition.bmp
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%%DATADIR%%/saws/js/PETSc.js
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%%DATADIR%%/saws/js/boxTree.js
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%%DATADIR%%/saws/js/defaults.js
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%%DATADIR%%/saws/js/drawDiagrams.js
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%%DATADIR%%/saws/js/events.js
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%%DATADIR%%/saws/js/getCmdOptions.js
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%%DATADIR%%/saws/js/listLogic.js
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%%DATADIR%%/saws/js/main.js
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%%DATADIR%%/saws/js/matrixTex.js
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%%DATADIR%%/saws/js/parsePrefix.js
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%%DATADIR%%/saws/js/populateLists.js
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%%DATADIR%%/saws/js/recordSawsData.js
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%%DATADIR%%/saws/js/tree.js
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%%DATADIR%%/saws/js/treeInterface.js
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%%DATADIR%%/saws/js/utils.js
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%%DATADIR%%/saws/readme
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%%DATADIR%%/xml/performance_xml2html.xsl
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