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Cleanup plist

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This commit is contained in:
Baptiste Daroussin 2014-10-20 07:10:48 +00:00
parent b9c3a29822
commit 99a3e8559c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=371237
36 changed files with 0 additions and 644 deletions
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31
biology/artemis/pkg-plist
View file

@ -1778,34 +1778,3 @@ artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.class
artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.java
bin/act
bin/art
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/ibatis
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/gff
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/database
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis
@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger
@dirrm artemis-%%PORTVERSION%%/uk/ac
@dirrm artemis-%%PORTVERSION%%/uk
@dirrm artemis-%%PORTVERSION%%/type
@dirrm artemis-%%PORTVERSION%%/seqdb
@dirrm artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage
@dirrm artemis-%%PORTVERSION%%/nsdb/LocationPackage
@dirrm artemis-%%PORTVERSION%%/nsdb/EmblPackage
@dirrm artemis-%%PORTVERSION%%/nsdb
@dirrm artemis-%%PORTVERSION%%/lib/j2ssh
@dirrm artemis-%%PORTVERSION%%/lib/ibatis
@dirrm artemis-%%PORTVERSION%%/lib
@dirrm artemis-%%PORTVERSION%%/images
@dirrm artemis-%%PORTVERSION%%/etc
@dirrm artemis-%%PORTVERSION%%/artemis_sqlmap
@dirrm artemis-%%PORTVERSION%%

5
biology/biococoa/pkg-plist
View file

@ -63,8 +63,3 @@ GNUstep/Local/Library/Headers/BioCocoa
GNUstep/Local/Library/Libraries/libBioCocoa.so
GNUstep/Local/Library/Libraries/libBioCocoa.so.2
GNUstep/Local/Library/Libraries/libBioCocoa.so.2.2.2
@dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Resources
@dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers
@dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2
@dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions
@dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework

16
biology/crux/pkg-plist
View file

@ -54,19 +54,3 @@ lib/Crux/parsers/Fasta.pickle
%%PYTHON_SITELIBDIR%%/Crux/__init__.py
%%PYTHON_SITELIBDIR%%/Crux/__init__.so
%%PYTHON_SITELIBDIR%%/Parsing.so
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/SFMT
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/DistMatrix
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Tree
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux
@dirrm %%PYTHON_SITELIBDIR%%/Crux/include
@dirrm %%PYTHON_SITELIBDIR%%/Crux/Tree
@dirrm %%PYTHON_SITELIBDIR%%/Crux/Mc3
@dirrm %%PYTHON_SITELIBDIR%%/Crux/DistMatrix
@dirrm %%PYTHON_SITELIBDIR%%/Crux
@dirrm lib/Crux/parsers
@dirrm lib/Crux/lib
@dirrm lib/Crux

48
biology/emboss/pkg-plist
View file

@ -2314,51 +2314,3 @@ lib/libnucleus.so.6.0.5
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wosstopic.txt
%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmlget.txt
%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmltext.txt
@dirrm bin
@dirrm include/ezlib
@dirrm include/eplplot
@dirrm include/epcre
@dirrm include/eexpat
@dirrm include
@dirrm lib
@dirrm %%DATADIR%%/acd
@dirrm %%DATADIR%%/data/AAINDEX
@dirrm %%DATADIR%%/data/CODONS
@dirrm %%DATADIR%%/data/JASPAR_CNE
@dirrm %%DATADIR%%/data/JASPAR_CORE
@dirrm %%DATADIR%%/data/JASPAR_FAM
@dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS
@dirrm %%DATADIR%%/data/JASPAR_PBM
@dirrm %%DATADIR%%/data/JASPAR_PBM_HLH
@dirrm %%DATADIR%%/data/JASPAR_PBM_HOMEO
@dirrm %%DATADIR%%/data/JASPAR_POLII
@dirrm %%DATADIR%%/data/JASPAR_SPLICE
@dirrm %%DATADIR%%/data/OBO
@dirrm %%DATADIR%%/data/PRINTS
@dirrm %%DATADIR%%/data/PROSITE
@dirrm %%DATADIR%%/data/REBASE
@dirrm %%DATADIR%%/data/TAXONOMY
@dirrm %%DATADIR%%/data
@dirrm %%DATADIR%%/index
@dirrm %%DATADIR%%/jemboss/images
@dirrm %%DATADIR%%/jemboss/lib/axis
@dirrm %%DATADIR%%/jemboss/lib
@dirrm %%DATADIR%%/jemboss/resources
@dirrm %%DATADIR%%/jemboss/utils
@dirrm %%DATADIR%%/jemboss
@dirrm %%DATADIR%%/test/data
@dirrm %%DATADIR%%/test/embl
@dirrm %%DATADIR%%/test/genbank
@dirrm %%DATADIR%%/test/pir
@dirrm %%DATADIR%%/test/swiss
@dirrm %%DATADIR%%/test/swnew
@dirrm %%DATADIR%%/test/testdb
@dirrm %%DATADIR%%/test
@dirrmtry %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/html
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrmtry share

3
biology/fasta3/pkg-plist
View file

@ -118,6 +118,3 @@ man/man1/tfasty35.1.gz
%%DATADIR%%/pam250.mat
%%DATADIR%%/rna.mat
%%DATADIR%%/vtml160.mat
@dirrm %%DATADIR%%
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%

1
biology/fastdnaml/pkg-plist
View file

@ -32,4 +32,3 @@ bin/fastdnaml/usertree
bin/fastdnaml/usertrees
bin/fastdnaml/weights
bin/fastdnaml/weights_categories
@dirrm bin/fastdnaml

26
biology/garlic/pkg-plist
View file

@ -1,7 +1,6 @@
bin/garlic
share/garlic/.garlicrc
share/garlic/residues.pdb
@dirrm share/garlic
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/ascorbic_acid1.jpg
%%PORTDOCS%%%%DOCSDIR%%/ascorbic_acid2.jpg
@ -258,30 +257,6 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%DOCSDIR%%/whatis/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/whatis/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/whatis/index.html
%%PORTDOCS%%@dirrm %%DOCSDIR%%/whatis
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorial
%%PORTDOCS%%@dirrm %%DOCSDIR%%/techinfo
%%PORTDOCS%%@dirrm %%DOCSDIR%%/support
%%PORTDOCS%%@dirrm %%DOCSDIR%%/scripts
%%PORTDOCS%%@dirrm %%DOCSDIR%%/refcard
%%PORTDOCS%%@dirrm %%DOCSDIR%%/precompiled_packages
%%PORTDOCS%%@dirrm %%DOCSDIR%%/options
%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse/.xvpics
%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse
%%PORTDOCS%%@dirrm %%DOCSDIR%%/license
%%PORTDOCS%%@dirrm %%DOCSDIR%%/install
%%PORTDOCS%%@dirrm %%DOCSDIR%%/gallery
%%PORTDOCS%%@dirrm %%DOCSDIR%%/features
%%PORTDOCS%%@dirrm %%DOCSDIR%%/download
%%PORTDOCS%%@dirrm %%DOCSDIR%%/data
%%PORTDOCS%%@dirrm %%DOCSDIR%%/cookbook
%%PORTDOCS%%@dirrm %%DOCSDIR%%/controls
%%PORTDOCS%%@dirrm %%DOCSDIR%%/config
%%PORTDOCS%%@dirrm %%DOCSDIR%%/competition
%%PORTDOCS%%@dirrm %%DOCSDIR%%/commands
%%PORTDOCS%%@dirrm %%DOCSDIR%%/changes
%%PORTDOCS%%@dirrm %%DOCSDIR%%/bugfixes
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%%%EXAMPLESDIR%%/adrenaline.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/22porins.script
%%PORTDOCS%%%%EXAMPLESDIR%%/backup-hyd.script
@ -325,4 +300,3 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/two-positive.script
%%PORTDOCS%%%%EXAMPLESDIR%%/water.pdb
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%

2
biology/hmmer/pkg-plist
View file

@ -43,5 +43,3 @@ man/man1/phmmer.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/globins4.out
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/minifam.h3m
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

1
biology/iolib/pkg-plist
View file

@ -110,4 +110,3 @@ man/man3/write_reading.3.gz
man/man3/write_scf.3.gz
man/man3/write_scf_header.3.gz
man/man4/Read.4.gz
@dirrmtry include/io_lib

1
biology/jalview/pkg-plist
View file

@ -14,4 +14,3 @@ bin/jalview
%%DATADIR%%/castor-0.9.6-xml.jar
%%DATADIR%%/axis.jar
%%DATADIR%%/xml-apis.jar
@dirrm %%DATADIR%%

34
biology/libsbml/pkg-plist
View file

@ -492,37 +492,3 @@ lib/libsbml.so.5.10.2
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twoalgebraicrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twodimensional.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xslt/layout/layout2svg.xsl
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/xslt/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/xslt
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-3
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/r
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml
@dirrm include/sbml/xml
@dirrm include/sbml/validator
@dirrm include/sbml/util
@dirrm include/sbml/units
@dirrm include/sbml/math
@dirrm include/sbml/extension
@dirrm include/sbml/conversion
@dirrm include/sbml/compress
@dirrm include/sbml/common
@dirrm include/sbml/annotation
@dirrm include/sbml

3
biology/mafft/pkg-plist
View file

@ -66,6 +66,3 @@ man/man1/mafft.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna.qinsi
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna.xinsi
@dirrmtry libexec/mafft
%%PORTDOCS%%@dirrmtry %%DOCSDIR%%
%%PORTEXAMPLES%%@dirrmtry %%EXAMPLESDIR%%

1
biology/mopac/pkg-plist
View file

@ -6,4 +6,3 @@ lib/libmopac7.so.0
lib/libmopac7.so.0.0.0
libdata/pkgconfig/libmopac7.pc
libexec/mopac7
@dirrm include/mopac7

1
biology/mummer/pkg-plist
View file

@ -23,4 +23,3 @@ bin/show-tiling
%%PORTDOCS%%%%DOCSDIR%%/INSTALL
%%PORTDOCS%%%%DOCSDIR%%/LICENSE
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%@dirrm %%DOCSDIR%%

9
biology/ncbi-toolkit/pkg-plist
View file

@ -811,12 +811,3 @@ man/man1/vecscreen.1.gz
%%DATADIR%%/sgmlbb.ent
%%DATADIR%%/taxlist.txt
%%DATADIR%%/validrules.prt
@dirrmtry %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%/seq_install
%%PORTDOCS%%@dirrm %%DOCSDIR%%/images
%%PORTDOCS%%@dirrm %%DOCSDIR%%/fa2htgs
%%PORTDOCS%%@dirrm %%DOCSDIR%%/blast
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm lib/ncbi
@dirrm include/ncbi/connect
@dirrm include/ncbi

13
biology/p5-AcePerl/pkg-plist
View file

@ -144,16 +144,3 @@ bin/ace.pl
%%PERL5_MAN3%%/Ace::Sequence::Multi.3.gz
%%PERL5_MAN3%%/Ace::Sequence::Transcript.3.gz
man/man1/ace.pl.1.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Sequence/Feature
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Sequence
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/RPC
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Freesubs
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/GFF
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace/Sequence
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace/Object
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace/Graphics/Glyph
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace/Graphics
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace/Browser
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Ace

7
biology/p5-Bio-ASN1-EntrezGene/pkg-plist
View file

@ -7,10 +7,3 @@
%%PERL5_MAN3%%/Bio::ASN1::EntrezGene::Indexer.3.gz
%%PERL5_MAN3%%/Bio::ASN1::Sequence.3.gz
%%PERL5_MAN3%%/Bio::ASN1::Sequence::Indexer.3.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1/EntrezGene
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrmtry %%SITE_PERL%%/Bio/ASN1/EntrezGene
@dirrmtry %%SITE_PERL%%/Bio/ASN1/Sequence
@dirrmtry %%SITE_PERL%%/Bio/ASN1
@dirrmtry %%SITE_PERL%%/Bio

2
biology/p5-Bio-Das-Lite/pkg-plist
View file

@ -1,4 +1,2 @@
%%SITE_PERL%%/Bio/Das/Lite.pm
%%PERL5_MAN3%%/Bio::Das::Lite.3.gz
@dirrmtry %%SITE_PERL%%/Bio/Das
@dirrmtry %%SITE_PERL%%/Bio

7
biology/p5-Bio-Das/pkg-plist
View file

@ -51,10 +51,3 @@
%%PERL5_MAN3%%/Bio::Das::Type.3.gz
%%PERL5_MAN3%%/Bio::Das::TypeHandler.3.gz
%%PERL5_MAN3%%/Bio::Das::Util.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das
@dirrmtry %%SITE_PERL%%/Bio/Das/Request
@dirrmtry %%SITE_PERL%%/Bio/Das/HTTP
@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL
@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV
@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage
@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer

7
biology/p5-Bio-GFF3/pkg-plist
View file

@ -11,10 +11,3 @@ bin/gff3_from_fasta
%%PERL5_MAN3%%/Bio::GFF3::Transform::FromFasta.3.gz
%%PERL5_MAN3%%/Bio::GFF3::Transform::SyncDirectives.3.gz
man/man1/gff3_from_fasta.1.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/GFF3/Transform
@dirrm %%SITE_PERL%%/Bio/GFF3/LowLevel/Parser
@dirrm %%SITE_PERL%%/Bio/GFF3/LowLevel
@dirrm %%SITE_PERL%%/Bio/GFF3
@dirrmtry %%SITE_PERL%%/Bio

3
biology/p5-Bio-Glite/pkg-plist
View file

@ -1,6 +1,3 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite/.packlist
%%SITE_PERL%%/Bio/Glite.pm
%%PERL5_MAN3%%/Bio::Glite.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrmtry %%SITE_PERL%%/Bio

4
biology/p5-Bio-Graphics/pkg-plist
View file

@ -216,7 +216,3 @@ man/man1/contig_draw.pl.1.gz
man/man1/feature_draw.pl.1.gz
man/man1/frend.pl.1.gz
man/man1/search_overview.pl.1.gz
@dirrmtry %%SITE_PERL%%/Bio/Graphics/FeatureFile
@dirrmtry %%SITE_PERL%%/Bio/Graphics/Glyph
@dirrmtry %%SITE_PERL%%/Bio/Graphics/Wiggle
@dirrmtry %%SITE_PERL%%/Bio/Graphics

7
biology/p5-Bio-MAGETAB/pkg-plist
View file

@ -117,10 +117,3 @@ bin/unload_magetab_namespace.pl
%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::IDF.3.gz
%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::SDRF.3.gz
%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::Tabfile.3.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/MAGETAB
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader
@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer
@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util
@dirrm %%SITE_PERL%%/Bio/MAGETAB
@dirrmtry %%SITE_PERL%%/Bio

6
biology/p5-Bio-NEXUS/pkg-plist
View file

@ -61,9 +61,3 @@ bin/nextool.pl
man/man1/nex2text_tree.pl.1.gz
man/man1/nexplot.pl.1.gz
man/man1/nextool.pl.1.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/NEXUS/Util
@dirrm %%SITE_PERL%%/Bio/NEXUS/Tools
@dirrm %%SITE_PERL%%/Bio/NEXUS
@dirrmtry %%SITE_PERL%%/Bio

25
biology/p5-Bio-Phylo/pkg-plist
View file

@ -239,28 +239,3 @@
%%PERL5_MAN3%%/Bio::Phylo::Util::OptionalInterface.3.gz
%%PERL5_MAN3%%/Bio::Phylo::Util::StackTrace.3.gz
%%PERL5_MAN3%%/Bio::PhyloRole.3.gz
@dirrm %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
@dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Service
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS
@dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML
@dirrm %%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna
@dirrm %%SITE_PERL%%/Bio/Phylo/Models/Substitution
@dirrm %%SITE_PERL%%/Bio/Phylo/Models
@dirrm %%SITE_PERL%%/Bio/Phylo/Mediators
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices
@dirrm %%SITE_PERL%%/Bio/Phylo/Forest
@dirrm %%SITE_PERL%%/Bio/Phylo
@dirrmtry %%SITE_PERL%%/Bio
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio

4
biology/p5-Bio-SCF/pkg-plist
View file

@ -3,7 +3,3 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/SCF.so
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/.packlist
%%PERL5_MAN3%%/Bio::SCF.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio

22
biology/p5-bioperl-run/pkg-plist
View file

@ -261,25 +261,3 @@ bin/bp_run_protdist
%%PORTDOCS%%%%DOCSDIR%%/Changes
%%PORTDOCS%%%%DOCSDIR%%/INSTALL.PROGRAMS
%%PORTDOCS%%%%DOCSDIR%%/README
@dirrmtry %%SITE_PERL%%/Bio/DB/ESoap
@dirrmtry %%SITE_PERL%%/Bio/DB/SoapEUtilities/FetchAdaptor
@dirrmtry %%SITE_PERL%%/Bio/DB/SoapEUtilities
@dirrmtry %%SITE_PERL%%/Bio/Installer
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Alignment
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Analysis
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/BEDTools
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/BWA
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/BlastPlus
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Bowtie
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Maq
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/Hyphy
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/Njtree
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phast
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Phylo
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/Samtools
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run/StandAloneBlastPlus
%%PORTDOCS%%@dirrmtry %%DOCSDIR%%

156
biology/p5-bioperl/pkg-plist
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@ -1937,159 +1937,3 @@ man/man1/bp_unflatten_seq.pl.1.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/seq_pattern.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/standaloneblast.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree/paup2phylip.pl
@dirrm %%SITE_PERL%%/Bio/Align
@dirrm %%SITE_PERL%%/Bio/AlignIO/Handler
@dirrm %%SITE_PERL%%/Bio/AlignIO
@dirrm %%SITE_PERL%%/Bio/Annotation
@dirrm %%SITE_PERL%%/Bio/Assembly/IO
@dirrm %%SITE_PERL%%/Bio/Assembly/Tools
@dirrm %%SITE_PERL%%/Bio/Assembly
@dirrm %%SITE_PERL%%/Bio/Cluster
@dirrm %%SITE_PERL%%/Bio/ClusterIO
@dirrm %%SITE_PERL%%/Bio/CodonUsage
@dirrm %%SITE_PERL%%/Bio/Coordinate/Result
@dirrm %%SITE_PERL%%/Bio/Coordinate
@dirrm %%SITE_PERL%%/Bio/DB/Expression
@dirrm %%SITE_PERL%%/Bio/DB/Flat/BDB
@dirrm %%SITE_PERL%%/Bio/DB/Flat
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/berkeleydb
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/dbi
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/memory
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Aggregator
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Util
@dirrm %%SITE_PERL%%/Bio/DB/GFF
@dirrm %%SITE_PERL%%/Bio/DB/HIV
@dirrm %%SITE_PERL%%/Bio/DB/Query
@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature/Store/DBI
@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature/Store
@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature
@dirrm %%SITE_PERL%%/Bio/DB/SeqVersion
@dirrm %%SITE_PERL%%/Bio/DB/TFBS
@dirrm %%SITE_PERL%%/Bio/DB/Taxonomy
@dirrm %%SITE_PERL%%/Bio/DB
@dirrm %%SITE_PERL%%/Bio/Das
@dirrm %%SITE_PERL%%/Bio/Draw
@dirrm %%SITE_PERL%%/Bio/Event
@dirrm %%SITE_PERL%%/Bio/Factory
@dirrm %%SITE_PERL%%/Bio/Index
@dirrm %%SITE_PERL%%/Bio/LiveSeq/IO
@dirrm %%SITE_PERL%%/Bio/LiveSeq
@dirrm %%SITE_PERL%%/Bio/Location
@dirrm %%SITE_PERL%%/Bio/Map
@dirrm %%SITE_PERL%%/Bio/MapIO
@dirrm %%SITE_PERL%%/Bio/Matrix/IO
@dirrm %%SITE_PERL%%/Bio/Matrix/PSM/IO
@dirrm %%SITE_PERL%%/Bio/Matrix/PSM
@dirrm %%SITE_PERL%%/Bio/Matrix
@dirrm %%SITE_PERL%%/Bio/MolEvol
@dirrm %%SITE_PERL%%/Bio/Nexml
@dirrm %%SITE_PERL%%/Bio/Ontology/SimpleGOEngine
@dirrm %%SITE_PERL%%/Bio/Ontology
@dirrm %%SITE_PERL%%/Bio/OntologyIO/Handlers
@dirrm %%SITE_PERL%%/Bio/OntologyIO
@dirrm %%SITE_PERL%%/Bio/Phenotype/MeSH
@dirrm %%SITE_PERL%%/Bio/Phenotype/OMIM
@dirrm %%SITE_PERL%%/Bio/Phenotype
@dirrm %%SITE_PERL%%/Bio/PhyloNetwork
@dirrm %%SITE_PERL%%/Bio/PopGen/IO
@dirrm %%SITE_PERL%%/Bio/PopGen/Simulation
@dirrm %%SITE_PERL%%/Bio/PopGen
@dirrm %%SITE_PERL%%/Bio/Restriction/Enzyme
@dirrm %%SITE_PERL%%/Bio/Restriction/IO
@dirrm %%SITE_PERL%%/Bio/Restriction
@dirrm %%SITE_PERL%%/Bio/Root
@dirrm %%SITE_PERL%%/Bio/Search/HSP
@dirrm %%SITE_PERL%%/Bio/Search/Hit
@dirrm %%SITE_PERL%%/Bio/Search/Iteration
@dirrm %%SITE_PERL%%/Bio/Search/Result
@dirrm %%SITE_PERL%%/Bio/Search/Tiling
@dirrm %%SITE_PERL%%/Bio/Search
@dirrm %%SITE_PERL%%/Bio/SearchIO/Writer
@dirrm %%SITE_PERL%%/Bio/SearchIO/XML
@dirrm %%SITE_PERL%%/Bio/SearchIO
@dirrm %%SITE_PERL%%/Bio/Seq/Meta
@dirrm %%SITE_PERL%%/Bio/Seq
@dirrm %%SITE_PERL%%/Bio/SeqEvolution
@dirrm %%SITE_PERL%%/Bio/SeqFeature/Gene
@dirrm %%SITE_PERL%%/Bio/SeqFeature/SiRNA
@dirrm %%SITE_PERL%%/Bio/SeqFeature/Tools
@dirrm %%SITE_PERL%%/Bio/SeqFeature
@dirrm %%SITE_PERL%%/Bio/SeqIO/Handler
@dirrm %%SITE_PERL%%/Bio/SeqIO/game
@dirrm %%SITE_PERL%%/Bio/SeqIO/tinyseq
@dirrm %%SITE_PERL%%/Bio/SeqIO
@dirrm %%SITE_PERL%%/Bio/Structure/IO
@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/DSSP
@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/STRIDE
@dirrm %%SITE_PERL%%/Bio/Structure/SecStr
@dirrm %%SITE_PERL%%/Bio/Structure
@dirrm %%SITE_PERL%%/Bio/Symbol
@dirrm %%SITE_PERL%%/Bio/Taxonomy
@dirrm %%SITE_PERL%%/Bio/Tools/Alignment
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/DNA
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/Protein
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis
@dirrm %%SITE_PERL%%/Bio/Tools/EMBOSS
@dirrm %%SITE_PERL%%/Bio/Tools/HMMER
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Molphy
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/PAML
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
@dirrm %%SITE_PERL%%/Bio/Tools/Primer
@dirrm %%SITE_PERL%%/Bio/Tools/Run/WrapperBase
@dirrm %%SITE_PERL%%/Bio/Tools/Run
@dirrm %%SITE_PERL%%/Bio/Tools/SeqPattern
@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA/Ruleset
@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA
@dirrm %%SITE_PERL%%/Bio/Tools/Signalp
@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
@dirrm %%SITE_PERL%%/Bio/Tools/Spidey
@dirrm %%SITE_PERL%%/Bio/Tools
@dirrm %%SITE_PERL%%/Bio/Tree/Draw
@dirrm %%SITE_PERL%%/Bio/Tree
@dirrm %%SITE_PERL%%/Bio/TreeIO
@dirrm %%SITE_PERL%%/Bio/Variation/IO
@dirrm %%SITE_PERL%%/Bio/Variation
@dirrm %%DATADIR%%/models
@dirrm %%DATADIR%%/scripts/Bio-DB-GFF
@dirrm %%DATADIR%%/scripts/Bio-DB-SeqFeature-Store
@dirrm %%DATADIR%%/scripts/DB
@dirrm %%DATADIR%%/scripts/DB-HIV
@dirrm %%DATADIR%%/scripts/das
@dirrm %%DATADIR%%/scripts/index
@dirrm %%DATADIR%%/scripts/popgen
@dirrm %%DATADIR%%/scripts/searchio
@dirrm %%DATADIR%%/scripts/seq
@dirrm %%DATADIR%%/scripts/seqstats
@dirrm %%DATADIR%%/scripts/taxa
@dirrm %%DATADIR%%/scripts/tree
@dirrm %%DATADIR%%/scripts/utilities
@dirrm %%DATADIR%%/scripts
@dirrm %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/bin
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/cgi-bin
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/lib
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/t
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator
%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/Bio-DB-GFF
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/align
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/cluster
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/contributed
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/db
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/liveseq
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/popgen
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/quality
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/root/lib
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/root
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/searchio
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sirna
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/structure
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tk
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tools
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tree
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

1
biology/paml/pkg-plist
View file

@ -8,4 +8,3 @@ bin/yn00
%%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf
%%PORTDOCS%%%%DOCSDIR%%/pamlFAQs.pdf
%%PORTDOCS%%%%DOCSDIR%%/pamlHistory.txt
%%PORTDOCS%%@dirrm %%DOCSDIR%%

1
biology/phylip/pkg-plist
View file

@ -41,4 +41,3 @@ lib/libdrawtree.so
%%DATADIR%%/font4
%%DATADIR%%/font5
%%DATADIR%%/font6
@dirrm %%DATADIR%%

10
biology/platon/pkg-plist
View file

@ -72,13 +72,3 @@ bin/pluton
%%DOCSDIR%%/s913a.res
%%DOCSDIR%%/sucrose.spf
%%PORTDOCS%%%%DOCSDIR%%/platon_html.tar.gz
@dirrm %%DOCSDIR%%/TEST/ABSORB_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/ABSTOMPA_TEST
@dirrm %%DOCSDIR%%/TEST/ADDSYM_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/ASYM_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/MULABS_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/PSICOR_EXAMPLE
@dirrm %%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE
@dirrm %%DOCSDIR%%/TEST
@dirrm %%DOCSDIR%%

14
biology/protomol/pkg-plist
View file

@ -112,17 +112,3 @@ bin/xyzviz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.spce.par
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.spce.psf
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.tip3.par
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/coulomb_309
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_water_184x
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/argon_400
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/bpti_water_1101
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/bpti_water_14281
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/butane_4
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_23
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/decalanine_66
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/electrons_22
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/methane_ethane_xxx
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/testset
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/water_216
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/water_648
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%

62
biology/ruby-bio/pkg-plist
View file

@ -330,65 +330,3 @@ bin/br_bioflat
bin/br_biogetseq
bin/br_pmfetch
etc/bioinformatics/seqdatabase.ini.sample
@dirrm etc/bioinformatics
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme
@dirrm %%RUBY_SITELIBDIR%%/bio/util/color_scheme
@dirrm %%RUBY_SITELIBDIR%%/bio/util
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/plugin
@dirrm %%RUBY_SITELIBDIR%%/bio/shell
@dirrm %%RUBY_SITELIBDIR%%/bio/sequence
@dirrm %%RUBY_SITELIBDIR%%/bio/io/flatfile
@dirrm %%RUBY_SITELIBDIR%%/bio/io/biosql/config
@dirrm %%RUBY_SITELIBDIR%%/bio/io/biosql
@dirrm %%RUBY_SITELIBDIR%%/bio/io
@dirrm %%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram
@dirrm %%RUBY_SITELIBDIR%%/bio/db/phyloxml
@dirrm %%RUBY_SITELIBDIR%%/bio/db/pdb
@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
@dirrm %%RUBY_SITELIBDIR%%/bio/db/genbank
@dirrm %%RUBY_SITELIBDIR%%/bio/db/fastq
@dirrm %%RUBY_SITELIBDIR%%/bio/db/fasta
@dirrm %%RUBY_SITELIBDIR%%/bio/db/embl
@dirrm %%RUBY_SITELIBDIR%%/bio/db/biosql
@dirrm %%RUBY_SITELIBDIR%%/bio/db
@dirrm %%RUBY_SITELIBDIR%%/bio/data
@dirrm %%RUBY_SITELIBDIR%%/bio/compat
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/tmhmm
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/spidey
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sim4
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/phylip
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/yn00
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/codeml
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/baseml
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/meme/mast
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/meme
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/iprscan
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/gcg
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blat
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/bl2seq
@dirrm %%RUBY_SITELIBDIR%%/bio/appl
@dirrm %%RUBY_SITELIBDIR%%/bio
@dirrm %%RUBY_EXAMPLESDIR%%/bio
@dirrm %%RUBY_DOCDIR%%/bio/ja
@dirrm %%RUBY_DOCDIR%%/bio

34
biology/seqan/pkg-plist
View file

@ -2109,37 +2109,3 @@ include/seqan/version.h
%%DATADIR%%/gapped_params/results_N73_H.dat
%%DATADIR%%/gapped_params/results_N74_H.dat
%%DATADIR%%/gapped_params/results_N75_H.dat
@dirrm %%DATADIR%%/gapped_params
@dirrm %%DATADIR%%/docs
@dirrm %%DATADIR%%
@dirrm include/seqan/system
@dirrm include/seqan/store
@dirrm include/seqan/statistics
@dirrm include/seqan/sequence_journaled
@dirrm include/seqan/sequence
@dirrm include/seqan/seeds2
@dirrm include/seqan/seeds
@dirrm include/seqan/score
@dirrm include/seqan/refinement
@dirrm include/seqan/random
@dirrm include/seqan/platform
@dirrm include/seqan/pipe
@dirrm include/seqan/parallel
@dirrm include/seqan/modifier
@dirrm include/seqan/misc
@dirrm include/seqan/map
@dirrm include/seqan/index
@dirrm include/seqan/graph_types
@dirrm include/seqan/graph_msa
@dirrm include/seqan/graph_align
@dirrm include/seqan/graph_algorithms
@dirrm include/seqan/find_motif
@dirrm include/seqan/find2
@dirrm include/seqan/find
@dirrm include/seqan/file
@dirrm include/seqan/consensus
@dirrm include/seqan/chaining
@dirrm include/seqan/blast
@dirrm include/seqan/basic
@dirrm include/seqan/align
@dirrm include/seqan

6
biology/tinker/pkg-plist
View file

@ -607,9 +607,3 @@ bin/xyzsybyl
%%DATADIR%%/test/water.run
%%DATADIR%%/test/water.xyz
%%DATADIR%%/tinker.txt
@dirrm %%DATADIR%%/test
@dirrm %%DATADIR%%/params
@dirrm %%DATADIR%%/bench
@dirrm %%DATADIR%%
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%

71
biology/ugene/pkg-plist
View file

@ -1430,74 +1430,3 @@ share/pixmaps/ugene.xpm
%%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa
%%DATADIR%%/workflow_samples/users/LinkData Fetch.usa
%%DATADIR%%/workflow_samples/users/QualityFilter.usa
@dirrm %%DATADIR%%/workflow_samples/users
@dirrm %%DATADIR%%/workflow_samples/Transcriptomics
@dirrm %%DATADIR%%/workflow_samples/Scenarios
@dirrm %%DATADIR%%/workflow_samples/NGS/tuxedo
@dirrm %%DATADIR%%/workflow_samples/NGS/cistrome
@dirrm %%DATADIR%%/workflow_samples/NGS
@dirrm %%DATADIR%%/workflow_samples/HMMER
@dirrm %%DATADIR%%/workflow_samples/Data merging
@dirrm %%DATADIR%%/workflow_samples/Data marking
@dirrm %%DATADIR%%/workflow_samples/Custom elements
@dirrm %%DATADIR%%/workflow_samples/Conversions
@dirrm %%DATADIR%%/workflow_samples/Alignment
@dirrm %%DATADIR%%/workflow_samples
@dirrm %%DATADIR%%/weight_matrix
@dirrm %%DATADIR%%/snp_scripts
@dirrm %%DATADIR%%/sitecon_models/prokaryotic
@dirrm %%DATADIR%%/sitecon_models/eukaryotic
@dirrm %%DATADIR%%/sitecon_models
@dirrm %%DATADIR%%/samples/Swiss-Prot
@dirrm %%DATADIR%%/samples/Stockholm
@dirrm %%DATADIR%%/samples/SCF
@dirrm %%DATADIR%%/samples/Raw
@dirrm %%DATADIR%%/samples/PDB
@dirrm %%DATADIR%%/samples/Newick
@dirrm %%DATADIR%%/samples/MSF
@dirrm %%DATADIR%%/samples/MMDB
@dirrm %%DATADIR%%/samples/HMM
@dirrm %%DATADIR%%/samples/Genbank
@dirrm %%DATADIR%%/samples/GFF
@dirrm %%DATADIR%%/samples/FASTQ
@dirrm %%DATADIR%%/samples/FASTA
@dirrm %%DATADIR%%/samples/EMBL
@dirrm %%DATADIR%%/samples/CLUSTALW
@dirrm %%DATADIR%%/samples/Assembly
@dirrm %%DATADIR%%/samples/ACE
@dirrm %%DATADIR%%/samples/ABIF
@dirrm %%DATADIR%%/samples
@dirrm %%DATADIR%%/query_samples
@dirrm %%DATADIR%%/primer3
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/vertebrates
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/urochordates
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/plants
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/nematodes
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/insects
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/fungi
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR
@dirrm %%DATADIR%%/position_weight_matrix
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%DATADIR%%/genome_lengths
@dirrm %%DATADIR%%/enzymes
@dirrm %%DATADIR%%/custom_annotations
@dirrm %%DATADIR%%/cmdline
@dirrm %%DATADIR%%/biostruct3d_plugin
@dirrm %%DATADIR%%/back_translation/Yeast
@dirrm %%DATADIR%%/back_translation/Viruses
@dirrm %%DATADIR%%/back_translation/Vertebrates
@dirrm %%DATADIR%%/back_translation/Rodents
@dirrm %%DATADIR%%/back_translation/Primates
@dirrm %%DATADIR%%/back_translation/Plants
@dirrm %%DATADIR%%/back_translation/Mammalia
@dirrm %%DATADIR%%/back_translation/Invertebrates
@dirrm %%DATADIR%%/back_translation/Bacteria
@dirrm %%DATADIR%%/back_translation
@dirrm %%DATADIR%%
@dirrm lib/ugene/plugins
@dirrm lib/ugene