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silent updates of archives:

Browse source 
a) program: Draw the hydrophobicity function F5
b) documentation: add very minor description not
   related FreeBSD.

1) bump portrevision
2) several clean ups for Makefile
This commit is contained in:
Maho Nakata 2003-12-28 08:02:14 +00:00
parent 88cab673f6
commit a7e3bc1c4c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=96734
3 changed files with 8 additions and 4 deletions
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6
biology/garlic/Makefile
View file

@ -7,6 +7,7 @@
PORTNAME= garlic PORTNAME= garlic
PORTVERSION= 1.4 PORTVERSION= 1.4
PORTREVISION= 1
CATEGORIES= biology CATEGORIES= biology
MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/ MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
@ -26,10 +27,11 @@ ALL_TARGET= # empty
.if defined(WITH_OPTIMIZED_FLAGS) .if defined(WITH_OPTIMIZED_FLAGS)
CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double
.if (${MACHINE_ARCH} == "i386") .if (${MACHINE_ARCH} == "i386")
CFLAGS+= -mcpu=i686 -march=i686 -mfancy-math-387 CFLAGS+= -mfancy-math-387 -mpreferred-stack-boundary=3
.endif # i386 .endif # i386
.endif .endif
post-patch: post-patch:
@${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \ @${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \
s|%%LOCALBASE%%|${LOCALBASE}|g ;\ s|%%LOCALBASE%%|${LOCALBASE}|g ;\
@ -50,7 +52,7 @@ do-install:
@${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR} @${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR}
@${MKDIR} ${DOCSDIR} @${MKDIR} ${DOCSDIR}
@${MKDIR} ${WRKDIR}/doc @${MKDIR} ${WRKDIR}/doc
@cd ${WRKDIR}/doc ; ${TAR} xvfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} @(cd ${WRKDIR}/doc ; ${TAR} xfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} )
@${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \ @${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \
${TAR} -C ${DOCSDIR} -xf - ${TAR} -C ${DOCSDIR} -xf -
@${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP} @${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP}

4
biology/garlic/distinfo
View file

@ -1,2 +1,2 @@
MD5 (garlic-1.4.tar.gz) = d20462ca2aa0ea7fe78d56b5905558cd MD5 (garlic-1.4.tar.gz) = 054b8fdb3575609229bac2f743c85cd9
MD5 (garlic-1.4-doc.tar.gz) = 8272b727100a742fe68b7b209d546a89 MD5 (garlic-1.4-doc.tar.gz) = f53f758ca785630c22d19d3744015122

2
biology/garlic/pkg-plist
View file

@ -290,6 +290,7 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script %%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script %%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script
%%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/porin.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script %%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script
@ -302,4 +303,5 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/singlebond.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/singlebond.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/test.script %%PORTDOCS%%%%EXAMPLESDIR%%/test.script
%%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb %%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/water.pdb
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%% %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%