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Update to 1.5

Browse source 
Submitted by:	distfile survey by kris, fenner
This commit is contained in:
Maho Nakata 2006-03-15 08:10:49 +00:00
parent 1ade0865e8
commit a8bac6a90f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=157146
4 changed files with 246 additions and 228 deletions
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5
biology/garlic/Makefile
View file

@ -6,8 +6,7 @@
#
PORTNAME= garlic
PORTVERSION= 1.4
PORTREVISION= 2
PORTVERSION= 1.5
CATEGORIES= biology
MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
@ -26,7 +25,7 @@ ALL_TARGET= # empty
.if defined(WITH_OPTIMIZED_FLAGS)
CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double
.if (${MACHINE_ARCH} == "i386")
.if (${ARCH} == "i386")
CFLAGS+= -mfancy-math-387 -mpreferred-stack-boundary=3
.endif # i386
.endif

12
biology/garlic/distinfo
View file

@ -1,6 +1,6 @@
MD5 (garlic-1.4.tar.gz) = 054b8fdb3575609229bac2f743c85cd9
SHA256 (garlic-1.4.tar.gz) = 71588a28310fe528376b750756e5aeb754d52d19dfce075a8dbc42d35668682f
SIZE (garlic-1.4.tar.gz) = 525932
MD5 (garlic-1.4-doc.tar.gz) = f53f758ca785630c22d19d3744015122
SHA256 (garlic-1.4-doc.tar.gz) = 684d743ea4fbbf15bdce20089d8424fd34fc43555c156b9a111558ec6699e7c3
SIZE (garlic-1.4-doc.tar.gz) = 1144169
MD5 (garlic-1.5.tar.gz) = a45b478ea1247fa9875b35cfa2001cb8
SHA256 (garlic-1.5.tar.gz) = d0c1b97274dc1154490c1ee64201fc67fc7036442e18df41d72cb55b896bb334
SIZE (garlic-1.5.tar.gz) = 561319
MD5 (garlic-1.5-doc.tar.gz) = 6f407ecfc5bf9126b4a79b6c20e4edb8
SHA256 (garlic-1.5-doc.tar.gz) = 927e9750500e1acb8c0299d273be19bafda0a9971badbc90d4866f696ef5bbe3
SIZE (garlic-1.5-doc.tar.gz) = 1202222

10
biology/garlic/files/patch-Makefile
View file

@ -1,15 +1,15 @@
--- Makefile.orig Fri May 30 20:27:25 2003
+++ Makefile Mon Jul 28 12:01:48 2003
--- Makefile.orig Thu Mar 2 20:12:46 2006
+++ Makefile Wed Mar 15 16:50:07 2006
@@ -1,14 +1,14 @@
-CC = gcc
+CC = %%CC%%
#CCOPT = -O
#CCOPT = -O3
-CCOPT = -O3
+CCOPT = %%CFLAGS%% -I%%LOCALBASE%%/include -I%%X11BASE%%/include
#CCOPT = -O3 -g3
#CCOPT = -ansi -pedantic -g3
-CCOPT = -ansi -pedantic -O -Wall -Wstrict-prototypes -g3
+CCOPT = %%CFLAGS%% -I%%LOCALBASE%%/include -I%%X11BASE%%/include
#CCOPT = -ansi -pedantic -O -Wall -Wstrict-prototypes -g3
HEADERS = defines.h typedefs.h

447
biology/garlic/pkg-plist
View file

@ -2,48 +2,182 @@ bin/garlic
share/garlic/.garlicrc
share/garlic/residues.pdb
@dirrm share/garlic
%%PORTDOCS%%%%DOCSDIR%%/data/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/data/index.html
%%PORTDOCS%%%%DOCSDIR%%/data/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/refcard/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/refcard/index.html
%%PORTDOCS%%%%DOCSDIR%%/refcard/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/refcard/refcard.html
%%PORTDOCS%%%%DOCSDIR%%/techinfo/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/techinfo/index.html
%%PORTDOCS%%%%DOCSDIR%%/techinfo/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/mouse/neighbor.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/outplot.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/index.html
%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outplot.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outstr.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outcomp.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outrama.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/outstr.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/outcomp.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/outrama.gif
%%PORTDOCS%%%%DOCSDIR%%/mouse/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/download/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/download/index.html
%%PORTDOCS%%%%DOCSDIR%%/download/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/scripts/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/scripts/colors.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/atoms.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/probes.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/bonds.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/license/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/license/index.html
%%PORTDOCS%%%%DOCSDIR%%/license/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/docs.html
%%PORTDOCS%%%%DOCSDIR%%/index.html
%%PORTDOCS%%%%DOCSDIR%%/ascorbic_acid1.jpg
%%PORTDOCS%%%%DOCSDIR%%/ascorbic_acid2.jpg
%%PORTDOCS%%%%DOCSDIR%%/bold_statement.html
%%PORTDOCS%%%%DOCSDIR%%/bugfixes/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/bugfixes/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/bugfixes/index.html
%%PORTDOCS%%%%DOCSDIR%%/changes/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/changes/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/changes/index.html
%%PORTDOCS%%%%DOCSDIR%%/commands/aacodes.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/add.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ang.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ato.html
%%PORTDOCS%%%%DOCSDIR%%/commands/atoms.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/bac.html
%%PORTDOCS%%%%DOCSDIR%%/commands/bal.html
%%PORTDOCS%%%%DOCSDIR%%/commands/balls_and_sticks.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/bg.html
%%PORTDOCS%%%%DOCSDIR%%/commands/blu.html
%%PORTDOCS%%%%DOCSDIR%%/commands/blur1.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur2.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur3.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur4.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur5.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur6.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur7.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/blur8.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/bon.html
%%PORTDOCS%%%%DOCSDIR%%/commands/bonds.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/cat.html
%%PORTDOCS%%%%DOCSDIR%%/commands/cen.html
%%PORTDOCS%%%%DOCSDIR%%/commands/chi_angles.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/col.html
%%PORTDOCS%%%%DOCSDIR%%/commands/colors.png
%%PORTDOCS%%%%DOCSDIR%%/commands/com.html
%%PORTDOCS%%%%DOCSDIR%%/commands/cre.html
%%PORTDOCS%%%%DOCSDIR%%/commands/dihedrals.html
%%PORTDOCS%%%%DOCSDIR%%/commands/dis.html
%%PORTDOCS%%%%DOCSDIR%%/commands/doc.html
%%PORTDOCS%%%%DOCSDIR%%/commands/dock1.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/dock2.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/dum.html
%%PORTDOCS%%%%DOCSDIR%%/commands/dummy_atoms.html
%%PORTDOCS%%%%DOCSDIR%%/commands/edi.html
%%PORTDOCS%%%%DOCSDIR%%/commands/eis_oct.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/exe.html
%%PORTDOCS%%%%DOCSDIR%%/commands/exi.html
%%PORTDOCS%%%%DOCSDIR%%/commands/fad.html
%%PORTDOCS%%%%DOCSDIR%%/commands/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/commands/fg.html
%%PORTDOCS%%%%DOCSDIR%%/commands/fon.html
%%PORTDOCS%%%%DOCSDIR%%/commands/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/generic_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/gly_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/gro.html
%%PORTDOCS%%%%DOCSDIR%%/commands/hid.html
%%PORTDOCS%%%%DOCSDIR%%/commands/hyb.html
%%PORTDOCS%%%%DOCSDIR%%/commands/id.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/ign.html
%%PORTDOCS%%%%DOCSDIR%%/commands/index.html
%%PORTDOCS%%%%DOCSDIR%%/commands/insert
%%PORTDOCS%%%%DOCSDIR%%/commands/kd_eis.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/kd_oct.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/lab.html
%%PORTDOCS%%%%DOCSDIR%%/commands/large_probe.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/legend.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/loa.html
%%PORTDOCS%%%%DOCSDIR%%/commands/log.html
%%PORTDOCS%%%%DOCSDIR%%/commands/mem.html
%%PORTDOCS%%%%DOCSDIR%%/commands/mon.html
%%PORTDOCS%%%%DOCSDIR%%/commands/mov.html
%%PORTDOCS%%%%DOCSDIR%%/commands/nei.html
%%PORTDOCS%%%%DOCSDIR%%/commands/neighbor.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/omega_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/papain1.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/papain2.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/pat.html
%%PORTDOCS%%%%DOCSDIR%%/commands/patterns.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/pau.html
%%PORTDOCS%%%%DOCSDIR%%/commands/phipsi.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/pla.html
%%PORTDOCS%%%%DOCSDIR%%/commands/plane1.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/plane2.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/plane3.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/plo.html
%%PORTDOCS%%%%DOCSDIR%%/commands/plot1.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot2.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot3.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot_eq1.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot_eq2.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/pos.html
%%PORTDOCS%%%%DOCSDIR%%/commands/prepro_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/pro.html
%%PORTDOCS%%%%DOCSDIR%%/commands/pro_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/probes.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/rad.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ram.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ramacont.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/ramaplot.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/ref.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ref_off.gif
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%%PORTDOCS%%%%DOCSDIR%%/commands/res.html
%%PORTDOCS%%%%DOCSDIR%%/commands/residues.html
%%PORTDOCS%%%%DOCSDIR%%/commands/rot.html
%%PORTDOCS%%%%DOCSDIR%%/commands/sav.html
%%PORTDOCS%%%%DOCSDIR%%/commands/sca.html
%%PORTDOCS%%%%DOCSDIR%%/commands/schemes.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/seahorse.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/sel.html
%%PORTDOCS%%%%DOCSDIR%%/commands/seq.html
%%PORTDOCS%%%%DOCSDIR%%/commands/set.html
%%PORTDOCS%%%%DOCSDIR%%/commands/sho.html
%%PORTDOCS%%%%DOCSDIR%%/commands/sla.html
%%PORTDOCS%%%%DOCSDIR%%/commands/small_probe.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/squid.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/ssb.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ste.html
%%PORTDOCS%%%%DOCSDIR%%/commands/stefin1.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/stefin2.jpg
%%PORTDOCS%%%%DOCSDIR%%/commands/sti.html
%%PORTDOCS%%%%DOCSDIR%%/commands/str.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/str.html
%%PORTDOCS%%%%DOCSDIR%%/commands/substmat.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/tag.html
%%PORTDOCS%%%%DOCSDIR%%/commands/tbg.html
%%PORTDOCS%%%%DOCSDIR%%/commands/tfg.html
%%PORTDOCS%%%%DOCSDIR%%/commands/tit.html
%%PORTDOCS%%%%DOCSDIR%%/commands/tra.html
%%PORTDOCS%%%%DOCSDIR%%/commands/ven.html
%%PORTDOCS%%%%DOCSDIR%%/commands/venn.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/whe.html
%%PORTDOCS%%%%DOCSDIR%%/commands/wheel.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/win.html
%%PORTDOCS%%%%DOCSDIR%%/competition/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/competition/index.html
%%PORTDOCS%%%%DOCSDIR%%/config/.garlicrc
%%PORTDOCS%%%%DOCSDIR%%/config/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/config/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/config/important_files.html
%%PORTDOCS%%%%DOCSDIR%%/config/index.html
%%PORTDOCS%%%%DOCSDIR%%/controls/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/controls/funkeys.jpg
%%PORTDOCS%%%%DOCSDIR%%/controls/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/controls/index.html
%%PORTDOCS%%%%DOCSDIR%%/controls/modkeys.jpg
%%PORTDOCS%%%%DOCSDIR%%/controls/numkeys.jpg
%%PORTDOCS%%%%DOCSDIR%%/controls/pc.gif
%%PORTDOCS%%%%DOCSDIR%%/controls/term.gif
%%PORTDOCS%%%%DOCSDIR%%/cookbook/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/cookbook/garlic_recipe1.html
%%PORTDOCS%%%%DOCSDIR%%/cookbook/index.html
%%PORTDOCS%%%%DOCSDIR%%/data/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/data/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/data/index.html
%%PORTDOCS%%%%DOCSDIR%%/demo1.png
%%PORTDOCS%%%%DOCSDIR%%/demo2.png
%%PORTDOCS%%%%DOCSDIR%%/docs.html
%%PORTDOCS%%%%DOCSDIR%%/download/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/download/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/download/index.html
%%PORTDOCS%%%%DOCSDIR%%/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/fdl.html
%%PORTDOCS%%%%DOCSDIR%%/features/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/features/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/features/index.html
%%PORTDOCS%%%%DOCSDIR%%/future-docs.html
%%PORTDOCS%%%%DOCSDIR%%/gallery/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/gallery/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/gallery/index.html
%%PORTDOCS%%%%DOCSDIR%%/gallery/small1.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small10.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small11.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small12.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small2.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small3.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small4.png
@ -52,167 +186,61 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%DOCSDIR%%/gallery/small7.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small8.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/small9.png
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%%PORTDOCS%%%%DOCSDIR%%/gallery/small12.png
%%PORTDOCS%%%%DOCSDIR%%/gallery/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/config/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/config/.garlicrc
%%PORTDOCS%%%%DOCSDIR%%/config/index.html
%%PORTDOCS%%%%DOCSDIR%%/config/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/support/favicon.ico
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%%PORTDOCS%%%%DOCSDIR%%/commands/pro_hint.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/res.html
%%PORTDOCS%%%%DOCSDIR%%/commands/balls_and_sticks.gif
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%%PORTDOCS%%%%DOCSDIR%%/commands/eis_oct.gif
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%%PORTDOCS%%%%DOCSDIR%%/commands/sca.html
%%PORTDOCS%%%%DOCSDIR%%/commands/plot1.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot2.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/plot3.gif
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%%PORTDOCS%%%%DOCSDIR%%/commands/dis.html
%%PORTDOCS%%%%DOCSDIR%%/commands/seahorse.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/dihedrals.html
%%PORTDOCS%%%%DOCSDIR%%/commands/gro.html
%%PORTDOCS%%%%DOCSDIR%%/commands/tfg.html
%%PORTDOCS%%%%DOCSDIR%%/commands/small_probe.gif
%%PORTDOCS%%%%DOCSDIR%%/commands/rad.html
%%PORTDOCS%%%%DOCSDIR%%/commands/plane1.jpg
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%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outrama.gif
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%%PORTDOCS%%%%DOCSDIR%%/mouse/favicon.ico
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%%PORTDOCS%%%%DOCSDIR%%/mouse/outplot.gif
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%%PORTDOCS%%%%DOCSDIR%%/precompiled_packages/index.html
%%PORTDOCS%%%%DOCSDIR%%/refcard/favicon.ico
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%%PORTDOCS%%%%DOCSDIR%%/refcard/index.html
%%PORTDOCS%%%%DOCSDIR%%/refcard/refcard.html
%%PORTDOCS%%%%DOCSDIR%%/scripts/atoms.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/bonds.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/colors.script
%%PORTDOCS%%%%DOCSDIR%%/scripts/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/scripts/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/scripts/probes.script
%%PORTDOCS%%%%DOCSDIR%%/support/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/support/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/support/index.html
%%PORTDOCS%%%%DOCSDIR%%/techinfo/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/techinfo/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/techinfo/index.html
%%PORTDOCS%%%%DOCSDIR%%/tolower.script
%%PORTDOCS%%%%DOCSDIR%%/tutorial/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/tutorial/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/tutorial/index.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson1.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson10.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson11.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson12.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/index.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson1.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson2.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson3.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson4.html
@ -225,34 +253,18 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%DOCSDIR%%/tutorial/script2.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/script3.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/script4.html
%%PORTDOCS%%%%DOCSDIR%%/tutorial/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/tutorial/window.gif
%%PORTDOCS%%%%DOCSDIR%%/whatis/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/whatis/index.html
%%PORTDOCS%%%%DOCSDIR%%/whatis/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/competition/index.html
%%PORTDOCS%%%%DOCSDIR%%/competition/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/versions.html
%%PORTDOCS%%%%DOCSDIR%%/options/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/options/index.html
%%PORTDOCS%%%%DOCSDIR%%/options/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/install/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/install/macosx.html
%%PORTDOCS%%%%DOCSDIR%%/install/index.html
%%PORTDOCS%%%%DOCSDIR%%/install/octane.html
%%PORTDOCS%%%%DOCSDIR%%/install/mol_path.html
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%%PORTDOCS%%%%DOCSDIR%%/install/rs6000.html
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%%PORTDOCS%%%%DOCSDIR%%/whatis/favicon.ico
%%PORTDOCS%%%%DOCSDIR%%/whatis/garlic.gif
%%PORTDOCS%%%%DOCSDIR%%/whatis/index.html
%%PORTDOCS%%@dirrm %%DOCSDIR%%/whatis
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorial
%%PORTDOCS%%@dirrm %%DOCSDIR%%/techinfo
%%PORTDOCS%%@dirrm %%DOCSDIR%%/support
%%PORTDOCS%%@dirrm %%DOCSDIR%%/scripts
%%PORTDOCS%%@dirrm %%DOCSDIR%%/refcard
%%PORTDOCS%%@dirrm %%DOCSDIR%%/precompiled_packages
%%PORTDOCS%%@dirrm %%DOCSDIR%%/options
%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse/.xvpics
%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse
@ -270,16 +282,23 @@ share/garlic/residues.pdb
%%PORTDOCS%%@dirrm %%DOCSDIR%%/changes
%%PORTDOCS%%@dirrm %%DOCSDIR%%/bugfixes
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%%%EXAMPLESDIR%%/18-porins.script
%%PORTDOCS%%%%EXAMPLESDIR%%/18porins.script
%%PORTDOCS%%%%EXAMPLESDIR%%/18porins2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/1mal.script
%%PORTDOCS%%%%EXAMPLESDIR%%/2fcp.script
%%PORTDOCS%%%%EXAMPLESDIR%%/2omf.script
%%PORTDOCS%%%%EXAMPLESDIR%%/2por.script
%%PORTDOCS%%%%EXAMPLESDIR%%/adrenalin.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/arrow.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/ascorbic-acid.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/atoms.script
%%PORTDOCS%%%%EXAMPLESDIR%%/b.script
%%PORTDOCS%%%%EXAMPLESDIR%%/barrel.script
%%PORTDOCS%%%%EXAMPLESDIR%%/bonds.script
%%PORTDOCS%%%%EXAMPLESDIR%%/borneol.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/box.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/ccacaa.script
%%PORTDOCS%%%%EXAMPLESDIR%%/colors.script
%%PORTDOCS%%%%EXAMPLESDIR%%/dance.script
%%PORTDOCS%%%%EXAMPLESDIR%%/gallery.script
@ -290,7 +309,6 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script
%%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/porin.script
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%%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script
@ -303,5 +321,6 @@ share/garlic/residues.pdb
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%%PORTDOCS%%%%EXAMPLESDIR%%/test.script
%%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/two-positive.script
%%PORTDOCS%%%%EXAMPLESDIR%%/water.pdb
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%