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biology/diamond: Update to version 0.8.31.

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Upstream changelog:

  - Added compositional score adjustments (option --comp-based-stats
    (0,1)). This is a useful feature for filtering false positive hits and
    is enabled by default.

  - Removed --single-domain option and replaced by --max-hsps, to set the
    maximum number of Hsps per query/subject pair, to be consistent with
    BLAST. This option is set to 1 by default as getting more than 1 Hsp
    per subject seems to be confusing users.

  - Added option --no-self-hits to filter identical self-hits.

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D9134
This commit is contained in:
Joseph Mingrone 2017-01-12 23:23:19 +00:00
parent e4fe58ca05
commit ac30d1f025
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=431331
2 changed files with 4 additions and 4 deletions
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2
biology/diamond/Makefile
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@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= diamond
PORTVERSION= 0.8.30
PORTVERSION= 0.8.31
DISTVERSIONPREFIX=v
CATEGORIES= biology

6
biology/diamond/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1483113104
SHA256 (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = ee138e4241c2712d6ce967785474312c52a45c6b56715b00e2abf759605e1fbb
SIZE (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = 329097
TIMESTAMP = 1484137862
SHA256 (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = b89fec7665346d80dd3e8e0c7fb599117cd0f6c9831cf568dd08bf9b894b075a
SIZE (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = 335317