science/dakota: Update 6.13.0 -> 6.15.0
This commit is contained in:
Yuri Victorovich
parent
e8c81013fc
commit
c5921be582
8 changed files with 91 additions and 111 deletions
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@ -1,8 +1,9 @@
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PORTNAME= dakota
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DISTVERSION= 6.13.0
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PORTREVISION= 4
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DISTVERSION= 6.15.0
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CATEGORIES= science
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MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
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DISTNAME= ${PORTNAME}-${DISTVERSION}-public-src-cli
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DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Interface between analysis codes & iterative systems analysis methods
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@ -10,14 +11,23 @@ COMMENT= Interface between analysis codes & iterative systems analysis methods
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LICENSE= LGPL21
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= nanoflann>0:math/nanoflann
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LIB_DEPENDS= libblas.so:math/blas \
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libboost_system.so:devel/boost-libs \
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liblapack.so:math/lapack
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libgsl.so:math/gsl \
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libhdf5.so:science/hdf5 \
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liblapack.so:math/lapack \
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libnlopt.so:math/nlopt \
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libsz.so:science/szip
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RUN_DEPENDS= bash:shells/bash
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USES= cmake compiler:c++11-lang fortran perl5 python shebangfix
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USES= cmake compiler:c++11-lang fortran motif perl5 pkgconfig python shebangfix xorg
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USE_XORG= ice sm x11 xau xdmcp xext xft xmu xrender xt
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USE_LDCONFIG= yes
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USE_GITHUB= nodefault
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GH_TUPLE= stan-dev:math:v2.18.0:stanmath/stanmath
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SHEBANG_GLOB= *.sh *.py
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SHEBANG_FILES= interfaces/Python/mpitile \
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scripts/pyprepro/dprepro \
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@ -25,17 +35,21 @@ SHEBANG_FILES= interfaces/Python/mpitile \
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scripts/dprepro.perl \
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test/dakota_test.perl
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CMAKE_ON= Boost_NO_BOOST_CMAKE \
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CMAKE_ON= HAVE_X_GRAPHICS # always enable graphics because w/out it a lot of unrelated files aren't installed due to bugs in the project
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CMAKE_ON+= Boost_NO_BOOST_CMAKE \
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DAKOTA_GIT_checkout
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#CMAKE_ON+= HAVE_C3 # causes "duplicate include" error
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#CMAKE_ON+= DAKOTA_DL_SOLVER # fails to compile: error: declaration of anonymous class must be a definition
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#CMAKE_ON+= HAVE_NOWPAC # installs files into $PORTSDIR
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CMAKE_ON+= HAVE_DREAM HAVE_ADAPTIVE_SAMPLING HAVE_OPTPP DAKOTA_HOPS HAVE_ACRO \
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HAVE_JEGA HAVE_NOMAD HAVE_NPSOL HAVE_NL2SOL HAVE_DOT HAVE_SURFPACK \
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HAVE_CONMIN HAVE_DDACE HAVE_FSUDACE HAVE_PSUADE HAVE_ROL HAVE_DEMO_TPL # enable some methods that aren't enabled by default, see the list @ src/DakotaIterator.cpp
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CMAKE_ON+= HAVE_QUESO \
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HAVE_MUQ MUQ_USE_PYTHON \
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# enable some methods that aren't enabled by default, see the list @ src/DakotaIterator.cpp
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CMAKE_ON+= DAKOTA_HAVE_GSL DAKOTA_HAVE_HDF5
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CMAKE_OFF= DAKOTA_ENABLE_TESTS
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CMAKE_ARGS= -DDakota_VERSION_SRC:STRING=${DISTVERSION} -DDakota_GIT_REVL:STRING=${GIT_HASH} -DDakota_RELEASE_DATE:${STRING}=20201116
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CMAKE_ARGS= -DDakota_VERSION_SRC:STRING=${DISTVERSION} -DDakota_GIT_REVL:STRING=unknown -DDakota_RELEASE_DATE:${STRING}=20211115 \
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-DPython_EXECUTABLE=${PYTHON_CMD} \
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-DMUQ_STANMATH_DIR=${WRKSRC}/stanmath
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FFLAGS+= -fallow-argument-mismatch
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LDFLAGS+= -lexecinfo
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@ -43,59 +57,22 @@ LDFLAGS+= -lexecinfo
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CONFLICTS_BUILD= dakota # self: picks up some bundled packages from the pre-installed dakota package and then fails to install them
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CONFLICTS_INSTALL= openblas
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USES_GIT= no
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GIT_URL= https://software.sandia.gov/git/dakota
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GIT_HASH= 82fd55ea1c6bb6d32e4c68e7f92d991d658ba90a
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.if ${USES_GIT} == "yes"
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FETCH_DEPENDS= git:devel/git
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do-fetch:
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@if [ "${FORCE_FETCH_ALL}" = "true" ] || ! [ -f "${DISTDIR}/${DIST_SUBDIR}/${DISTNAME}${EXTRACT_SUFX}" ]; then \
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${MKDIR} ${DISTDIR}/${DIST_SUBDIR} && \
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cd ${DISTDIR}/${DIST_SUBDIR} && \
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git clone -q ${GIT_URL} ${PORTNAME}-${DISTVERSIONFULL} && \
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(cd ${PORTNAME}-${DISTVERSIONFULL} && \
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git checkout devel && \
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git submodule init packages/external && \
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git submodule init packages/pecos && \
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git submodule init packages/surfpack && \
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git submodule update) && \
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(cd ${PORTNAME}-${DISTVERSIONFULL} && git reset -q --hard ${GIT_HASH} && ${RM} -r .git) && \
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${FIND} ${PORTNAME}-${DISTVERSIONFULL} -and -exec ${TOUCH} -h -d 1970-01-01T00:00:00Z {} \; && \
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${FIND} ${PORTNAME}-${DISTVERSIONFULL} -print0 | LC_ALL=C ${SORT} -z | \
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${TAR} czf ${PORTNAME}-${DISTVERSIONFULL}${EXTRACT_SUFX} --format=bsdtar --gid 0 --uid 0 --options gzip:!timestamp --no-recursion --null -T - && \
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${RM} -r ${PORTNAME}-${DISTVERSIONFULL}; \
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fi
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.else
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DISTNAME= ${PORTNAME}-${DISTVERSION}-release-public.src-UI
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.endif
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OPTIONS_DEFINE= GSL GUI HDF5
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OPTIONS_DEFAULT= GSL HDF5
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OPTIONS_SUB= yes
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GSL_DESC= GSL support
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GSL_CMAKE_BOOL= DAKOTA_HAVE_GSL HAVE_QUESO HAVE_QUESO_GPMSA # QUESO requires GSL
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GSL_LIB_DEPENDS= libgsl.so:math/gsl
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HDF5_CMAKE_BOOL= DAKOTA_HAVE_HDF5 \
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HAVE_MUQ # MUQ module requires HDF5
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HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \
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libsz.so:science/szip
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GUI_DESC= Build the Dakota/Motif Graphics package
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GUI_CMAKE_BOOL= HAVE_X_GRAPHICS
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GUI_BROKEN= error: non-void function 'SciPlotListReturnPtr' should return a value
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post-extract:
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@${FIND} ${WRKSRC} -name "*.orig" -delete
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@${ECHO} ${DISTVERSION} > ${WRKSRC}/VERSION # expected by the 'install' target
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pre-configure: # MUQ_STANMATH_DIR is lost otherwise
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@${REINPLACE_CMD} 's|find_package(PkgConfig)|set(MUQ_STANMATH_DIR ${WRKSRC}/stanmath)|' ${WRKSRC}/packages/external/muq2/cmake/finds/FindSTANMATH.cmake
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post-install:
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# remove eigen3 that Dakota installs
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cd ${STAGEDIR}${PREFIX} && ${RM} -r include/eigen3 share/eigen3
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# remove cblas.h that Dakota installs
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${RM} ${STAGEDIR}${PREFIX}/include/cblas.h
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# remove *.orig files
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${RM} ${STAGEDIR}${PREFIX}/include/colin/AppResponse.h.orig
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# install libraries that it fails to install
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.for l in libmuqUtilities.so libmuqModeling.so libmuqSamplingAlgorithms.so
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.for l in libmuqSamplingAlgorithms.so libmuqApproximation.so libmuqInference.so libmuqModeling.so libmuqOptimization.so libmuqUtilities.so
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${INSTALL_LIB} ${BUILD_WRKSRC}/packages/external/muq2/lib/${l} ${STAGEDIR}${PREFIX}/lib
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.endfor
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@ -1,3 +1,5 @@
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TIMESTAMP = 1613774738
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SHA256 (dakota-6.13.0-release-public.src-UI.tar.gz) = 064f6e49569893cfcbe53a86b089fa3502b8b5f3c52f0122b88f93704464b9e7
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SIZE (dakota-6.13.0-release-public.src-UI.tar.gz) = 139642138
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TIMESTAMP = 1643858651
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SHA256 (dakota-6.15.0-public-src-cli.tar.gz) = b6d971b7d6fe913aa64fef29cf8fcf55d0e5339f9f55fb164e3cc38716b48f61
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SIZE (dakota-6.15.0-public-src-cli.tar.gz) = 125618819
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SHA256 (stan-dev-math-v2.18.0_GH0.tar.gz) = 53fbce2b28aea76695af7a91f51fdd356367153fc42b3573e2b91e6586eca91d
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SIZE (stan-dev-math-v2.18.0_GH0.tar.gz) = 17528084
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@ -1,17 +1,20 @@
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--- CMakeLists.txt.orig 1970-01-01 00:00:00 UTC
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--- CMakeLists.txt.orig 2021-11-05 17:27:37 UTC
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+++ CMakeLists.txt
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@@ -253,7 +253,9 @@ if(ENABLE_DAKOTA_DOCS)
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add_subdirectory(docs)
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@@ -258,9 +258,11 @@ if(ENABLE_DAKOTA_DOCS)
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endif()
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# Legacy examples
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-add_subdirectory(examples)
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+if (FREEBSD_ENABLE_EXAMPLES)
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+ add_subdirectory(examples)
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+endif()
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# New examples library, taking care to guard against empty directory
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-if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/dakota-examples/CMakeLists.txt")
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+if(FREEBSD_ENABLE_EXAMPLES AND EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/dakota-examples/CMakeLists.txt")
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add_subdirectory(dakota-examples)
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endif()
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add_subdirectory(interfaces)
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@@ -275,19 +277,23 @@ install(FILES INSTALL LICENSE COPYRIGHT README
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@@ -284,19 +286,23 @@ install(FILES INSTALL LICENSE COPYRIGHT README
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DESTINATION ${DAKOTA_TOPFILES_INSTALL}
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)
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@ -33,5 +36,5 @@
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)
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+endif()
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# Final CPack settings (depends on DAKOTA_GIT_checkout)
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# Final CPack settings
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dakota_cpack_finalize()
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@ -1,11 +0,0 @@
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--- cmake/DakotaVersionUtils.cmake.orig 2021-02-10 05:46:56 UTC
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+++ cmake/DakotaVersionUtils.cmake
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@@ -28,7 +28,7 @@ macro(dakota_version_from_git)
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# Building in a Git repo or a source package?
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set(DAKOTA_VERSION_file_path)
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- set(DAKOTA_GIT_checkout FALSE)
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+ set(DAKOTA_GIT_checkout TRUE)
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if(EXISTS ${Dakota_SOURCE_DIR}/.git)
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@ -1,17 +0,0 @@
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- patch provided by the upstream
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--- packages/external/acro/packages/colin/src/colin/AppResponse.h.orig 2021-02-17 01:12:03 UTC
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+++ packages/external/acro/packages/colin/src/colin/AppResponse.h
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@@ -54,10 +54,10 @@ class AppResponse
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public: // typedefs
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///
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- typedef std::pair<response_info_t, const utilib::Any > response_pair_t;
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+ typedef std::pair<response_info_t, utilib::Any > response_pair_t;
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///
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- typedef std::map<response_info_t, const utilib::Any > response_map_t;
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+ typedef std::map<response_info_t, utilib::Any > response_map_t;
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public: // construct / destruct / copy / compare methods
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@ -0,0 +1,22 @@
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- reported to the ML on 2022-02-01
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--- packages/external/sciplot/SciPlot.c.orig 2022-02-01 09:03:55 UTC
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+++ packages/external/sciplot/SciPlot.c
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@@ -3761,7 +3761,7 @@ realpair* SciPlotListReturnPtr (Widget wi, int idnum,
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SciPlotList *p;
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SciPlotWidget w;
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if (!XtIsSciPlot(wi))
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- return;
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+ return NULL;
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w = (SciPlotWidget) wi;
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p = _ListFind(w, idnum);
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@@ -3792,7 +3792,7 @@ Boolean SciPlotQuickUpdateCheck (Widget wi)
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{
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SciPlotWidget w;
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if (!XtIsSciPlot(wi))
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- return;
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+ return NULL;
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w = (SciPlotWidget) wi;
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return CheckMinMax(w);
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@ -1,14 +0,0 @@
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- patch provided by the upstream
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--- src/ProcessHandleApplicInterface.cpp.orig 2021-02-17 01:12:32 UTC
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+++ src/ProcessHandleApplicInterface.cpp
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@@ -17,6 +17,9 @@
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#include "ParallelLibrary.hpp"
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#include "WorkdirHelper.hpp"
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#include <algorithm>
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+#ifdef HAVE_SYS_WAIT_H
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+#include <sys/wait.h> // for wait process status macros (Posix only)
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+#endif
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namespace Dakota {
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@ -1,5 +1,6 @@
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bin/coliny
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bin/dakota
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bin/dakota-ui.sh
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bin/dakota.input.nspec
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bin/dakota.input.summary
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bin/dakota.sh
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@ -11,6 +12,7 @@ bin/dakota_restart_util
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bin/dprepro
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bin/dprepro.perl
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bin/dprepro.py
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bin/dprepro3
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bin/fsu_cvt_standalone
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bin/fsu_halton_standalone
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bin/fsu_hammersley_standalone
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@ -26,6 +28,7 @@ bin/timer
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include/3po/cobyla.h
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include/APPSEvalMgr.hpp
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include/APPSOptimizer.hpp
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include/ActiveKey.hpp
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include/ActiveSubspaceModel.hpp
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include/AdaptedBasisModel.hpp
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include/AlgorithmConfig.hpp
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@ -288,6 +291,8 @@ include/GeneticAlgorithmPostProcessor.hpp.inl
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include/GeneticAlgorithmSelector.hpp
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include/GeneticAlgorithmSelector.hpp.inl
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include/GeometricRandomVariable.hpp
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include/Graph2D.hpp
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include/Graphics.hpp
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include/GridApplicInterface.hpp
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include/GumbelRandomVariable.hpp
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include/HDF5_IO.hpp
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@ -507,13 +512,16 @@ include/NegBinomialRandomVariable.hpp
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include/NestedModel.hpp
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include/NodalInterpPolyApproximation.hpp
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include/NomadOptimizer.hpp
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include/NonDACVSampling.hpp
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include/NonDAdaptImpSampling.hpp
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include/NonDAdaptiveSampling.hpp
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include/NonDBayesCalibration.hpp
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include/NonDC3FunctionTrain.hpp
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include/NonDCalibration.hpp
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include/NonDControlVariateSampling.hpp
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include/NonDCubature.hpp
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include/NonDDREAMBayesCalibration.hpp
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include/NonDEnsembleSampling.hpp
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include/NonDExpansion.hpp
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include/NonDGPImpSampling.hpp
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include/NonDGPMSABayesCalibration.hpp
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@ -521,6 +529,7 @@ include/NonDGlobalEvidence.hpp
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include/NonDGlobalInterval.hpp
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include/NonDGlobalReliability.hpp
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include/NonDGlobalSingleInterval.hpp
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include/NonDHierarchSampling.hpp
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include/NonDIntegration.hpp
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include/NonDInterval.hpp
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include/NonDLHSEvidence.hpp
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@ -532,10 +541,13 @@ include/NonDLocalInterval.hpp
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include/NonDLocalReliability.hpp
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include/NonDLocalSingleInterval.hpp
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include/NonDMUQBayesCalibration.hpp
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include/NonDMultifidelitySampling.hpp
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include/NonDMultilevControlVarSampling.hpp
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include/NonDMultilevelFunctionTrain.hpp
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include/NonDMultilevelPolynomialChaos.hpp
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include/NonDMultilevelSampling.hpp
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include/NonDMultilevelStochCollocation.hpp
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include/NonDNonHierarchSampling.hpp
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include/NonDPOFDarts.hpp
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include/NonDPolynomialChaos.hpp
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include/NonDQUESOBayesCalibration.hpp
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@ -549,6 +561,7 @@ include/NonDSurrogateExpansion.hpp
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include/NonDWASABIBayesCalibration.hpp
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include/NonDuplicatingRouletteWheelSelector.hpp
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include/NonDuplicatingRouletteWheelSelector.hpp.inl
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include/NonHierarchSurrModel.hpp
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include/NonLinearConstraint.h
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include/NonLinearConstraintNature.hpp
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include/NonLinearConstraintNature.hpp.inl
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@ -660,6 +673,7 @@ include/ProcessHandleApplicInterface.hpp
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include/ProgramOptions.hpp
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include/ProjectOrthogPolyApproximation.hpp
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include/PseudoRandomTestsOnly.h
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include/Pybind11Interface.hpp
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include/PythonInterface.hpp
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include/QMEApproximation.hpp
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include/QUESOImpl.hpp
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@ -1157,6 +1171,7 @@ include/SurrBasedMinimizer.hpp
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include/SurrogateData.hpp
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include/SurrogateModel.hpp
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include/SurrogatesBase.hpp
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include/SurrogatesGPKernels.hpp
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include/SurrogatesGPObjective.hpp
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include/SurrogatesGaussianProcess.hpp
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include/SurrogatesPolynomialRegression.hpp
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@ -1462,7 +1477,6 @@ include/bayes_calibration_utils.hpp
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include/bit_mask.hpp
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include/bit_mask.hpp.inl
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include/cb_level_log_gateway.hpp
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include/cblas.h
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include/cdflib.h
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include/colin/AmplApplication.h
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include/colin/AmplDriver.h
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@ -1471,7 +1485,6 @@ include/colin/AnalysisCodeApplication.h
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include/colin/AppRequest.h
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include/colin/AppRequest_Impl.h
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include/colin/AppResponse.h
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include/colin/AppResponse.h.orig
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include/colin/AppResponseAnalysis.h
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include/colin/AppResponseInfo.h
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include/colin/AppResponseLValues.h
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@ -1639,6 +1652,7 @@ include/log_gateways.hpp
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include/logs.hpp
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include/macros.hpp
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include/math_tools.hpp
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include/menu.h
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include/minimal_levels.hpp
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include/mutex.hpp
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include/mutex.hpp.inl
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@ -1651,6 +1665,7 @@ include/nidr.h
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include/null_log.hpp
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include/numeric_limits.hpp
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include/oa.h
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include/optpp_blas_wrap.h
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include/orthogonal_matching_pursuit.hpp
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include/ostream_entry.hpp
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include/ostream_log.hpp
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@ -2493,12 +2508,12 @@ lib/libcolin.so
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|||
lib/libconmin.so
|
||||
lib/libcport.so
|
||||
lib/libdakota_dll_api.so
|
||||
lib/libdakota_sciplot.so
|
||||
lib/libdakota_src.so
|
||||
lib/libdakota_src_fortran.so
|
||||
lib/libdakota_surrogates.so
|
||||
lib/libdakota_util.so
|
||||
lib/libddace.so
|
||||
lib/libdemo_tpl.so
|
||||
lib/libdfftpack.so
|
||||
lib/libdream.so
|
||||
lib/libeutils.so
|
||||
|
|
@ -2511,9 +2526,12 @@ lib/liblhs.so
|
|||
lib/liblhs_mod.so
|
||||
lib/liblhs_mods.so
|
||||
lib/libmoga.so
|
||||
lib/libmuqUtilities.so
|
||||
lib/libmuqApproximation.so
|
||||
lib/libmuqInference.so
|
||||
lib/libmuqModeling.so
|
||||
lib/libmuqOptimization.so
|
||||
lib/libmuqSamplingAlgorithms.so
|
||||
lib/libmuqUtilities.so
|
||||
lib/libncsuopt.so
|
||||
lib/libnidr.so
|
||||
lib/libnomad.so
|
||||
|
|
@ -2522,7 +2540,7 @@ lib/libpebbl.so
|
|||
lib/libpecos_src.so
|
||||
lib/libpecos_util.so
|
||||
lib/libpsuade.so
|
||||
%%GSL%%lib/libqueso.so
|
||||
lib/libqueso.so
|
||||
lib/librol.so
|
||||
lib/librol.so.13
|
||||
lib/librol.so.13.0
|
||||
|
|
|
|||
Loading…
Reference in a new issue