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biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)

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Read and write Generic Feature Format (GFF) with Biopython integration.

Also adding py-dna-features-viewer to Makefile, missed on last commit
This commit is contained in:
Jason W. Bacon 2022-02-03 13:37:21 -06:00
parent ae84243f74
commit d936c94c64
4 changed files with 24 additions and 0 deletions
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2
biology/Makefile
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@ -141,6 +141,7 @@
SUBDIR += psi88
SUBDIR += py-Genesis-PyAPI
SUBDIR += py-PySCeS
SUBDIR += py-bcbio-gff
SUBDIR += py-biom-format
SUBDIR += py-biopython
SUBDIR += py-bx-python
@ -148,6 +149,7 @@
SUBDIR += py-cutadapt
SUBDIR += py-deeptools
SUBDIR += py-deeptoolsintervals
SUBDIR += py-dna-features-viewer
SUBDIR += py-dnaio
SUBDIR += py-ete3
SUBDIR += py-gffutils

16
biology/py-bcbio-gff/Makefile Normal file
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@ -0,0 +1,16 @@
PORTNAME= bcbio-gff
DISTVERSION= 0.6.9
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Read and write Generic Feature Format (GFF) with Biopython integration
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
USES= python
USE_PYTHON= autoplist distutils
.include <bsd.port.mk>

3
biology/py-bcbio-gff/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1643900022
SHA256 (bcbio-gff-0.6.9.tar.gz) = 34dfa970e14f4533dc63c0a5512b7b5221e4a06449e6aaa344162ed5fdd7a1de
SIZE (bcbio-gff-0.6.9.tar.gz) = 44236

3
biology/py-bcbio-gff/pkg-descr Normal file
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@ -0,0 +1,3 @@
Read and write Generic Feature Format (GFF) with Biopython integration.
WWW: https://pypi.python.org/project/bcbio-gff/