Update to version 0.6.2
PR: 21954 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
This commit is contained in:
James E. Housley
parent
a09d414989
commit
f35e729498
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=33772
3 changed files with 154 additions and 196 deletions
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@ -6,7 +6,7 @@
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#
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PORTNAME= bioperl
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PORTVERSION= 0.6.1
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PORTVERSION= 0.6.2
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CATEGORIES= biology perl5
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MASTER_SITES= ftp://bio.perl.org/pub/DIST/ \
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http://bio.perl.org/Core/Latest/ \
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@ -17,108 +17,67 @@ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} bioperl-ext-0.6.tar.gz
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MAINTAINER= johann@egenetics.com
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BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/LWP/UserAgent.pm:${PORTSDIR}/www/p5-libwww \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/IO/Scalar.pm:${PORTSDIR}/devel/p5-IO-stringy \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl
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BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/HTTP/Request/Common.pm:${PORTSDIR}/www/p5-libwww \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/LWP/UserAgent.pm:${PORTSDIR}/www/p5-libwww \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/IO/Scalar.pm:${PORTSDIR}/devel/p5-IO-stringy
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USE_PERL5= YES
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PERL_CONFIGURE= YES
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EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06
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MAN3= Bio::Tools::CodonTable.3 \
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Bio::PrimarySeq.3 \
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Bio::Tools::SeqStats.3 \
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Bio::SimpleAlign.3 \
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Bio::Search::Processor::Fasta.3 \
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Bio::Root::Xref.3 \
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Bio::Annotation::DBLink.3 \
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Bio::SeqIO::swiss.3 \
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Bio::Annotation::Comment.3 \
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Bio::Tools::Sim4::Results.3 \
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Bio::Annotation::Reference.3 \
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Bio::SeqIO::pir.3 \
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Bio::Search::Hit::Fasta.3 \
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Bio::Tools::SeqAnal.3 \
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Bio::Annotation.3 \
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||||
Bio::Tools::Blast::HTML.3 \
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Bio::Tools::HMMER::Results.3 \
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||||
Bio::SeqIO::scf.3 \
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Bio::SeqIO::genbank.3 \
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Bio::Root::RootI.3 \
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Bio::Tools::SeqWords.3 \
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Bio::Root::Global.3 \
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Bio::Tools::pSW.3 \
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||||
Bio::SeqIO::raw.3 \
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||||
Bio::Tools::Blast::HSP.3 \
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||||
bioperl.3 \
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||||
Bio::RangeI.3 \
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||||
Bio::Search::Processor.3 \
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||||
Bio::Root::Object.3 \
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||||
Bio::Tools::WWW.3 \
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||||
Bio::PrimarySeqI.3 \
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||||
Bio::Index::Abstract.3 \
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||||
Bio::DB::Ace.3 \
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||||
Bio::SeqFeature::Generic.3 \
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||||
Bio::DB::SeqI.3 \
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||||
Bio::Root::Vector.3 \
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||||
Bio::Seq.3 \
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||||
Bio::Range.3 \
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||||
Bio::UnivAln.3 \
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||||
Bio::Tools::Blast::Run::Webblast.3 \
|
||||
Bio::SeqIO::gcg.3 \
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||||
biodesign.3 \
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||||
Bio::Tools::RestrictionEnzyme.3 \
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||||
Bio::DB::RandomAccessI.3 \
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||||
biostart.3 \
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Bio::Tools::Sim4::Exon.3 \
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Bio::Search::Hit::HitI.3 \
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bioback.3 \
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Bio::Tools::HMMER::Domain.3 \
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Bio::SeqIO::FTHelper.3 \
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Bio::Root::IOManager.3 \
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Bio::LocatableSeq.3 \
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Bio::Index::AbstractSeq.3 \
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Bio::Tools::Fasta.3 \
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Bio::Tools::Blast::Sbjct.3 \
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Bio::Tools::IUPAC.3 \
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Bio::SeqIO.3 \
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Bio::SeqIO::MultiFile.3 \
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Bio::Tools::AlignFactory.3 \
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Bio::SeqIO::fasta.3 \
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Bio::SeqFeature::FeaturePair.3 \
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Bio::DB::GenBank.3 \
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Bio::SeqI.3 \
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Bio::Tools::Blast.3 \
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Bio::Tools::HMMER::Set.3 \
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Bio::SeqFeatureI.3 \
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Bio::SearchDist.3 \
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Bio::Tools::Sigcleave.3 \
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Bio::Search::Result::ResultI.3 \
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Bio::Root::Utilities.3 \
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Bio::Root::Err.3 \
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Bio::Search::Result::Fasta.3 \
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Bio::Tools::SeqPattern.3 \
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MAN3= Bio::Annotation.3 Bio::Annotation::Comment.3 \
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Bio::Annotation::DBLink.3 Bio::Annotation::Reference.3 \
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Bio::DB::Ace.3 Bio::DB::GenBank.3 Bio::DB::GenPept.3 \
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Bio::DB::RandomAccessI.3 Bio::DB::SeqI.3 \
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Bio::Index::Abstract.3 Bio::Index::AbstractSeq.3 \
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Bio::Index::EMBL.3 Bio::Index::Fasta.3 \
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Bio::Index::SwissPfam.3 Bio::LocatableSeq.3 \
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Bio::PrimarySeq.3 Bio::PrimarySeqI.3 Bio::Range.3 \
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Bio::RangeI.3 Bio::Root::Err.3 Bio::Root::Global.3 \
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Bio::Root::IOManager.3 Bio::Root::Object.3 \
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Bio::Root::RootI.3 Bio::Root::Utilities.3 \
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Bio::Root::Vector.3 Bio::Root::Xref.3 \
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Bio::Search::Hit::Fasta.3 Bio::Search::Hit::HitI.3 \
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Bio::Search::Processor.3 Bio::Search::Processor::Fasta.3 \
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Bio::Search::Processor::ProcessorI.3 \
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Bio::Index::EMBL.3 \
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Bio::Species.3 \
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Bio::Search::Result::Fasta.3 \
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Bio::Search::Result::ResultI.3 Bio::SearchDist.3 \
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Bio::Seq.3 Bio::SeqFeature::FeaturePair.3 \
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Bio::SeqFeature::Generic.3 Bio::SeqFeatureI.3 Bio::SeqI.3 \
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Bio::SeqIO.3 Bio::SeqIO::FTHelper.3 \
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Bio::SeqIO::MultiFile.3 Bio::SeqIO::embl.3 \
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Bio::SeqIO::fasta.3 Bio::SeqIO::gcg.3 \
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Bio::SeqIO::genbank.3 Bio::SeqIO::pir.3 Bio::SeqIO::raw.3 \
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Bio::SeqIO::scf.3 Bio::SeqIO::swiss.3 Bio::SimpleAlign.3 \
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Bio::Species.3 Bio::Tools::AlignFactory.3 \
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Bio::Tools::Blast.3 Bio::Tools::Blast::HSP.3 \
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Bio::Tools::Blast::HTML.3 \
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Bio::Tools::Blast::Run::LocalBlast.3 \
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Bio::SeqIO::embl.3 \
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Bio::Index::SwissPfam.3 \
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Bio::DB::GenPept.3 \
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Bio::Index::Fasta.3
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Bio::Tools::Blast::Run::Webblast.3 \
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Bio::Tools::Blast::Sbjct.3 Bio::Tools::CodonTable.3 \
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Bio::Tools::Fasta.3 Bio::Tools::HMMER::Domain.3 \
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Bio::Tools::HMMER::Results.3 Bio::Tools::HMMER::Set.3 \
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Bio::Tools::IUPAC.3 Bio::Tools::RestrictionEnzyme.3 \
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Bio::Tools::SeqAnal.3 Bio::Tools::SeqPattern.3 \
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Bio::Tools::SeqStats.3 Bio::Tools::SeqWords.3 \
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Bio::Tools::Sigcleave.3 Bio::Tools::WWW.3 \
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Bio::Tools::pSW.3 Bio::UnivAln.3 \
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bioback.3 biodesign.3 bioperl.3 biostart.3
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MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION}
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do-configure:
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@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL)
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@(cd ${EXT_WRKSRC}/Bio/Ext/Align; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL)
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EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06/Bio/Ext/Align
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do-build:
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@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET})
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@(cd ${EXT_WRKSRC}/Bio/Ext/Align; ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET})
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post-configure:
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@ (cd ${EXT_WRKSRC} && \
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${SETENV} ${CONFIGURE_ENV} \
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${PERL5} ${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS})
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do-install:
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@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET})
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@(cd ${EXT_WRKSRC}/Bio/Ext/Align; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET})
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post-build:
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@ (cd ${EXT_WRKSRC} && \
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${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET})
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post-install:
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@ (cd ${EXT_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} \
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${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET})
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.include <bsd.port.mk>
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@ -1,2 +1,2 @@
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MD5 (bioperl-0.6.1.tar.gz) = e3506188027a94ea87443389a78c2fdc
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MD5 (bioperl-0.6.2.tar.gz) = 26330f4f0c1e08a4f5cbcbe8b05b72f1
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MD5 (bioperl-ext-0.6.tar.gz) = 5bf87e0cf94d3d41fabbfd209971d240
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@ -1,109 +1,108 @@
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lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenBank.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SeqI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Ace.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/RandomAccessI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenPept.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Err.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/RootI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Global.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Xref.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Object.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Vector.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Utilities.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IOManager.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/RangeI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/UnivAln.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeatureI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/genbank.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/FTHelper.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/raw.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/embl.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/scf.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/gcg.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/swiss.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/pir.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/MultiFile.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Results.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Exon.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/IUPAC.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/CodonTable.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AlignFactory.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Makefile.PL
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/postclient.pl
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/LocalBlast.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Webblast.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/CHANGES
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HSP.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Sbjct.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/README
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HTML.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/pSW.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqPattern.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/WWW.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Results.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Set.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Domain.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sigcleave.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqWords.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqStats.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqAnal.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/RestrictionEnzyme.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SearchDist.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit/HitI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit/Fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor/Fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor/ProcessorI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result/ResultI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result/Fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeqI.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Range.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SimpleAlign.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/EMBL.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/AbstractSeq.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Fasta.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Abstract.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/SwissPfam.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Species.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeq.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/LocatableSeq.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Comment.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Reference.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/DBLink.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/FeaturePair.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Generic.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod
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||||
lib/perl5/site_perl/%%PERL_VER%%/bioback.pod
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||||
lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod
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||||
lib/perl5/site_perl/%%PERL_VER%%/biostart.pod
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/.packlist
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.bs
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.so
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||||
lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm
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lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist
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||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Root
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO
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@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation.pm
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lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Comment.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/DBLink.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Reference.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Ace.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenBank.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenPept.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/RandomAccessI.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SeqI.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Abstract.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/AbstractSeq.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/EMBL.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/SwissPfam.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/LocatableSeq.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeq.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeqI.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Range.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/RangeI.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Err.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Global.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IOManager.pm
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||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Object.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/RootI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Utilities.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Vector.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Xref.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit/Fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit/HitI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor/Fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor/ProcessorI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result/Fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result/ResultI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SearchDist.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/FeaturePair.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Generic.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeatureI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqI.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/FTHelper.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/MultiFile.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/embl.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/gcg.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/genbank.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/pir.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/raw.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/scf.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/swiss.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/SimpleAlign.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Species.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AlignFactory.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/CHANGES
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HSP.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HTML.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/README
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/LocalBlast.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Makefile.PL
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Webblast.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/postclient.pl
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Sbjct.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/CodonTable.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Fasta.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Domain.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Results.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Set.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/IUPAC.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/RestrictionEnzyme.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqAnal.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqPattern.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqStats.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqWords.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sigcleave.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/WWW.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/pSW.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/Bio/UnivAln.pm
|
||||
lib/perl5/site_perl/%%PERL_VER%%/bioback.pod
|
||||
lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod
|
||||
lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod
|
||||
lib/perl5/site_perl/%%PERL_VER%%/biostart.pod
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Index
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Result
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Processor
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search/Hit
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Search
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Root
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Index
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext
|
||||
@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio
|
||||
|
|
|
|||
Loading…
Reference in a new issue