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Author SHA1 Message Date
Dennis Herrmann
2bd886f79d - Update to 0.9.6 
PR:		ports/135312
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-06-07 19:01:09 +00:00
Martin Wilke
81b3ce3c32 - Update to 4.0.5 
PR:		135246
Submitted by:	Florian Smeets <flo@kasimir.com> (maintainer)
 2009-06-06 22:53:25 +00:00
Dmitry Marakasov
15568ff477 - Update to 0.9.5 
PR:		135263
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-06-05 23:06:57 +00:00
Philip M. Gollucci
35f7c03e04 - Update to 0.09 
PR:             ports/134837
Approved by:    maintainer timeout (clsung; 15 days)
Submitted by:   me
 2009-06-05 22:56:07 +00:00
Martin Wilke
9735e6c7c7 - Update to 2.0.3 
PR:		135210
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-06-05 21:59:04 +00:00
Thierry Thomas
38c0413f09 Upgrade to 3.4.4. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html#3.4>.
 2009-06-05 19:25:23 +00:00
Li-Wen Hsu
fe82904993 - Update to 1.3.1 
PR:		ports/134179
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2009-06-05 17:13:55 +00:00
Pav Lucistnik
aa952fd48f - Resolve LATEST_LINK conflict 2009-05-31 20:31:08 +00:00
Rong-En Fan
1c688417c5 - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.h 
- Fix WITH_MPICH
- Use LOCALBASE for reference to bits installed by others
- Pass maintainership to the submitter
- Pet portlint(1): IGNORE

PR:		ports/133242
Submitted by:	Florian Smeets <flo at kasimir.com>
Approved by:	Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer)
 2009-05-30 16:17:14 +00:00
Maho Nakata
0412460a8f Take over. 2009-05-29 03:31:23 +00:00
Joe Marcus Clarke
a13d4ebe2d Chase the goffice update. 2009-05-24 19:44:21 +00:00
Dmitry Marakasov
0d74f73caf Avogadro is an advanced molecular editor designed for cross-platform use in 
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.

WWW: http://avogadro.openmolecules.net/

PR:		134710
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
 2009-05-22 22:16:46 +00:00
Pav Lucistnik
d0f33fd4a7 - Chase fftw3 update 2009-05-18 15:08:58 +00:00
Martin Wilke
1fb0bacb5a Chemistry-MacroMol is a toolkit includes basic objects and methods to 
describe macromolecules, a macromolecule is just a molecule that
consists of several "domains". For example, a protein consists
of aminoacid residues, or a nucleic acid consists of bases. Therefore
Chemistry::MacroMol is derived from Chemistry::Mol, with additional
methods to handle the domains.

WWW: http://search.cpan.org/dist/Chemistry-MacroMol/

PR:		ports/134609
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 13:00:50 +00:00
Martin Wilke
2b8e184f62 p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format 
is commonly used to describe proteins, particularly those stored in the
Protein Data Bank.

WWW: http://search.cpan.org/dist/Chemistry-File-PDB/

PR:		ports/134612
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 12:51:49 +00:00
Martin Wilke
275fec265c Chemistr-Mol is a toolkit includes basic objects and methods to 
describe molecules. It consists of several modules: Chemistry::Mol,
Chemistry::Atom, Chemistry::Bond, and Chemistry::File.

WWW: http://search.cpan.org/dist/Chemistry-Mol/

PR:		ports/134462
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-16 23:29:15 +00:00
Pav Lucistnik
3d5d026633 - Chase readline update 
Reported by:	pointyhat
 2009-05-13 20:22:35 +00:00
Beat Gaetzi
27fe0a252e - Update to 0.99.12 
Approved by:	miwi (mentor)
 2009-05-13 16:08:30 +00:00
Mark Linimon
cfbb13225e Release these ports into the wild due to maintainer-timeouts and no 
response to email.  We hope to see him back again sometime.
 2009-05-12 22:32:29 +00:00
Pav Lucistnik
d61c67ffd3 - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6 2009-05-11 18:38:56 +00:00
Joe Marcus Clarke
3b5c05f9c9 Chase the API changes in goffice-0.7.6. 2009-05-10 19:10:31 +00:00
Martin Wilke
f6941c7c85 - Update to 1.00.00 
PR:		134217
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-05-10 18:36:41 +00:00
Joe Marcus Clarke
7f277b7ca6 Fix patching by merging two patches for the same file. 2009-05-09 19:07:23 +00:00
Joe Marcus Clarke
be90f09a1b Chase the goffice update. 2009-05-09 04:57:59 +00:00
Maho Nakata
efd040cee7 Update to 20090112 R1 version. 2009-05-08 06:08:44 +00:00
Yen-Ming Lee
c2c78046f6 - reset MAINTAINER per request 
PR:		134253
Submitted by:	giffunip@tutopia.com
 2009-05-06 06:13:08 +00:00
Joe Marcus Clarke
4287b4ba5c Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5. 2009-05-05 05:14:51 +00:00
Joe Marcus Clarke
b2556d2449 Add some more goffice TYPE name conversions. 2009-05-03 17:59:20 +00:00
Joe Marcus Clarke
d07ad1ca0b Fix another TYPE name change with goffice 0.7.5. 2009-05-03 17:51:47 +00:00
Joe Marcus Clarke
302e506b5b Add another goffice-0.7.5 build fix. 2009-05-03 04:44:53 +00:00
Joe Marcus Clarke
e170985c57 Fix the build with goffice 0.7.5. 2009-05-03 04:00:56 +00:00
Joe Marcus Clarke
9ed5de9174 Chase the goffice update. 2009-05-03 00:38:05 +00:00
Martin Wilke
38be6ca769 - Update to 1.1.0 
PR:		133337
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-04-30 22:43:54 +00:00
Max Brazhnikov
7602b8e28d Update to 2.2.1 2009-04-26 14:49:08 +00:00
Maho Nakata
8f733c55c2 Fix build with NOPORTDOCS, NOPORTEXAMPLES. 
Submitted by:	QAT
 2009-04-24 10:26:05 +00:00
Martin Wilke
64b23ee9d0 Machine Learning PY (mlpy) is a high-performance Python package for 
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:	http://mlpy.fbk.eu/

PR:		ports/133932
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-04-23 17:02:20 +00:00
Maho Nakata
89d4fb1fe0 Update to 3.4.0. 2009-04-21 07:45:40 +00:00
Maho Nakata
33bd043b66 Fix build on amd64. 
Spotted by: QAT and pav.
 2009-04-13 05:20:27 +00:00
Yen-Ming Lee
08f9e8f9c4 - Update to 6.02 
PR:		133601
Submitted by:	leeym
Approved by:	maintainer
 2009-04-11 20:37:01 +00:00
Martin Wilke
f406ee2e01 2009-03-22 science/oof: Broken with GCC 4.2 and beyond 
2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable
 2009-04-11 09:58:39 +00:00
Martin Wilke
db4b1a44a3 - Fix DEPRECATED output 
Reported by:	rmport
 2009-04-11 09:52:52 +00:00
Thierry Thomas
fefa5eaa8b - Upgrade to 5.7.3 
Release notes at
	<http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html>

- enable bindings to get the headers
	This requires makemake and GSL.

Approved by:	Maho (maintainer)
 2009-04-10 15:22:53 +00:00
Dennis Herrmann
cf8759b2c9 - Update maintainer mail address 
PR:		ports/133397
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
Approved by:	tabthorpe (co-mentor)
 2009-04-05 20:50:49 +00:00
Ion-Mihai Tetcu
a5e8a0b9a9 Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging with 
-DNOPORT* defined.

Prompted by:	QAT QA run
Approved by:	maintainer timeout on QATMail
 2009-04-05 12:29:44 +00:00
Rong-En Fan
583e279a73 - Update to 2.89 2009-04-01 01:32:16 +00:00
Martin Wilke
a8dee6b343 - Allow to build with MAKE_JOBS_SAFE 
PR:		133221
Submitted by:	Roland Smith <rsmith@xs4all.nl> (maintainer)
 2009-03-31 07:52:12 +00:00
Joe Marcus Clarke
2e77166891 Chase the goffice update. 2009-03-28 03:05:24 +00:00
Pav Lucistnik
7f4323449e - Fix for new ruby-gettext 
- Update maintainer's email address

PR:		ports/133046
Submitted by:	Shin'ya Murakami <murashin@epa.scitec.kobe-u.ac.jp> (maintainer)
 2009-03-25 12:05:43 +00:00
Max Brazhnikov
eecc33021e bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
Martin Wilke
4e3a8bfce2 - Update to 0.98 
PR:		132971
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-23 21:51:29 +00:00
Thierry Thomas
3d2ad7d3f8 - Upgrade to 5.6.5; 
- Install libabinit;

- Handle NOPORTDOCS and NOPORTEXAMPLES;

- s/test/regression-test/;

- Don't install under a versionned $PREFIX.

Approved by:	maho (maintainer)
 2009-03-23 18:27:37 +00:00
Pav Lucistnik
b50b662db3 - Fix Fortran linking 
- Add a slaveport so fortran enabled netcdf can be packaged

PR:		ports/132430
Submitted by:	thierry
Approved by:	maintainer timeout (14 days)
 2009-03-22 22:09:27 +00:00
Martin Wilke
d4d8ed5164 Geo::ReadGRIB is an object Perl module that provides read 
access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.

WWW:	http://search.cpan.org/dist/Geo-ReadGRIB/

PR:		ports/132776
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-03-22 15:18:46 +00:00
Maho Nakata
dcfda0bf17 Update to 1.6.11. 2009-03-17 08:20:04 +00:00
Thierry Thomas
6a26b6b50c Fix plist with -DNOPORTDOCS. 
Reportded by:	QAT
 2009-03-16 22:34:19 +00:00
Martin Wilke
24f41cf769 - Update to 11.6.17 
PR:		131733
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-16 21:42:23 +00:00
Mark Linimon
c4e3a5d64a Mark as broken on sparc64: fails to compile. 2009-03-16 09:35:28 +00:00
Mark Linimon
5433360866 Mark broken: fails to compile on i386 and sparc64. 2009-03-16 08:43:58 +00:00
Martin Wilke
10b7f51c54 Brian is a simulator for spiking neural networks available on almost all 
platforms. The motivation for this project is that a simulator should
not only save the time of processors, but also the time of scientists.

Brian is easy to learn and use, highly flexible and easily extensible.
The Brian package itself and simulations using it are all written in
the Python programming language, which is an easy, concise and highly
developed language with many advanced features and development tools,
excellent documentation and a large community of users providing support
and extension packages.

WWW:  http://www.briansimulator.org/

PR:		ports/132155
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-03-16 06:07:37 +00:00
Pav Lucistnik
eae854d839 - Mark BROKEN: does not compile (../include/ecif_userinterface_TCL.h:41:17: 
error: tcl.h: No such file or directory)

Reported by:	pointyhat
 2009-03-13 14:25:43 +00:00
Thierry Thomas
befcfc1588 Upgrade to version 3.4.3. 2009-03-07 08:36:35 +00:00
Dennis Herrmann
2b3b399de8 - Use my FreeBSD address on the ports I maintain 
Approved by:	tabthorpe (co-mentor)
 2009-03-06 18:14:36 +00:00
Pav Lucistnik
911b7e57d5 - Mark BROKEN on FreeBSD 6.x, does not compile 
Reported by:	pointyhat
 2009-03-02 21:36:12 +00:00
Martin Wilke
1a9d6ed366 PsychoPy is an open-source package for creating psychology stimuli 
in Python (A real and free alternative to Matlab). PsychoPy combines
the graphical strengths of OpenGL with the easy Python syntax to give
psychophysics a free and simple stimulus presentation and control
package.

The goal is to provide, for the busy scientist (including me!), tools
to control timing and windowing and a simple set of pre-packaged
stimuli and methods. The code is platform independent, using Python
and C libraries that are widely available.

WWW:  http://www.psychopy.org/

PR:		ports/132156
Submitted by:	wenheping at gmail.com
 2009-02-28 19:58:19 +00:00
Martin Wilke
dad52be8e5 - Update to 0.7.0 
PR:		131636
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2009-02-28 19:54:59 +00:00
Martin Wilke
484b5acc7f - Update to 4.0.3 
PR:		131655
Submitted by:	Joerg Pulz <Joerg.Pulz@frm2.tum.de>
Approved by:	maintainer
 2009-02-28 19:49:49 +00:00
Rong-En Fan
81a4189c53 - Update description to reflect reality 2009-02-25 02:30:35 +00:00
Joe Marcus Clarke
602c204a89 Chase the goffice update. 2009-02-24 02:18:50 +00:00
Martin Wilke
7d22134ae1 netCDF version 4 has many features not found in earlier versions of the 
library and is implemented on top of HDF5. This module can read and
write files in both the new netCDF 4 and the old netCDF 3 format, and
can create files that are readable by HDF5 clients. The API modelled
after Scientific.IO.NetCDF, and should be familiar to users of that
module.

Many new features of netCDF 4 are implemented, such as multiple
unlimited dimensions, groups and zlib data compression. All the new
primitive data types (such as 64 bit and unsigned integer types) are
implemented, except variable-length strings (NC_STRING). User defined
data types (compound, vlen, enum etc.) are not supported.

WWW:  http://code.google.com/p/netcdf4-python/

PR:		ports/131866
Submitted by:	wenheping at gmail.com
 2009-02-23 20:18:45 +00:00
Martin Matuska
24bf28eff1 - Change default Tcl/Tk version to 8.5 
- Bump PORTVERSION of ports affected

Tested by:	pointyhat (pav)
 2009-02-23 14:46:37 +00:00
Gerald Pfeifer
a8277dd6f7 Mark unconditionally BROKEN, EXPIRATION_DATE=2009-03-22. 
Suggested by:	pav
 2009-02-22 01:31:20 +00:00
Max Brazhnikov
5f6ba2a345 Use my @FreeBSD.org email for the rest of my ports 2009-02-21 11:31:28 +00:00
Marcelo Araujo
baa19e0df7 - Mark as UNBROKEN on AMD64. 
- It isn't necessary to use USE_FORTRAN.
 2009-02-20 01:35:46 +00:00
Marcelo Araujo
ef56a06c67 - Mark as BROKEN, both doesn't compile on amd64. 
Reported by:	pav (pointyhat)
 2009-02-19 11:48:13 +00:00
Maho Nakata
b69dbd7d34 Fix build with gcc43. 
Spotted by pav
 2009-02-17 07:25:59 +00:00
Maho Nakata
1e01e4ebe1 Fix build with gcc43. 
Spotted by:	pav
 2009-02-14 08:36:17 +00:00
Maho Nakata
553c7e3cbe Fix build with gcc43. 
Fix obtained from
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html
.

Spotted by:	pav
 2009-02-14 08:07:13 +00:00
Wesley Shields
6ce638fdbf - Pass maintainership along. 2009-02-13 15:25:26 +00:00
Martin Matuska
c5e1202db4 - Update ImageMagick to 6.4.9.2 
- Libraries Magick++, MagickCore and MagickWand bumped to 2
- Update all ports using libraries above
 2009-02-10 19:50:55 +00:00
Gerald Pfeifer
44e552f824 Mark BROKEN. 2009-02-07 16:38:30 +00:00
Gerald Pfeifer
602f4b65f3 No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via 
Mk/bsd.gcc.mk.

Remove trailing whitespace to appease portlint.
 2009-02-07 15:11:31 +00:00
Gerald Pfeifer
35753a5a81 Remove obsolete comment. 
Approved by:	thierry
 2009-02-02 10:54:21 +00:00
Maho Nakata
1fffaf7887 Update to 1.1.4 
Suggested by: pav@
 2009-02-02 02:53:05 +00:00
Chin-San Huang
de1b6f6c07 - Update to 1.3.0 
- Enable HDF5 1.8, netCDF 4 and proj by default
- Reformat Makefile

PR:		ports/130720
Submitted by:	sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
 2009-02-01 09:54:29 +00:00
Pav Lucistnik
1e05a3718b - Distfile rerolled with minor change to configure script 
- Update download location

Reported by:	-fetch-original pointyhat run
 2009-01-30 22:25:07 +00:00
Pav Lucistnik
e93c59188a - Update download location, update WWW 
Reported by:	-fetch-original pointyhat run
 2009-01-30 21:15:33 +00:00
Beat Gaetzi
72329eb351 Update my email address to @FreeBSD.org. 
Approved by:	miwi (mentor)
 2009-01-28 23:25:21 +00:00
Thierry Thomas
c584171e48 Upgrade to 1.3.3. 2009-01-26 17:52:55 +00:00
Thierry Thomas
e8e613c2a6 Upgrade to 1.3.3 and use gfortran43. 
Changelog at
<http://rd.edf.com/the-edf-offers/research-and-development/softwares/code-saturne/code-saturne-news081127-en-601064.html>
 2009-01-26 17:52:53 +00:00
Thierry Thomas
fc5d806388 Upgrade to 0.12.0. 2009-01-26 17:52:46 +00:00
Thierry Thomas
1f2126a81c Upgrade to 1.0.8. 2009-01-26 17:52:44 +00:00
Florent Thoumie
584f727bc4 Fix science/afni after X.org 7.4 import (needs Xi). 
Reported by:	pointyhat (via pav)
 2009-01-24 10:02:09 +00:00
Florent Thoumie
340b57f8be - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
 2009-01-23 16:28:36 +00:00
Martin Wilke
de766bbf0d - Chase lang/guile shlib bump 2009-01-22 21:31:33 +00:00
Martin Wilke
13c0f27605 - Chase lang/guile shlib bump 2009-01-22 16:04:11 +00:00
Marcelo Araujo
38b8e670c0 - We need use FCFLAGS to build it in AMD64 and IA64. 
- Bump PORTREVISION.
 2009-01-21 00:36:06 +00:00
Marcelo Araujo
6ac20ad188 - No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now 
done via Mk/bsd.gcc.mk.

Reported by:	gerald
 2009-01-20 17:35:18 +00:00
Dmitry Marakasov
725856c485 - Use USE_FORTRAN knob 
PR:		130734
Submitted by:	Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
 2009-01-20 08:24:11 +00:00
Greg Lewis
fc324b2f3e . Update to 1.12.9. 2009-01-20 05:44:41 +00:00
Pav Lucistnik
2fa218459c - Fix OPTIONS processing 
PR:		ports/130740
Submitted by:	Shin'ya Murakami <murashin@gfd-dennou.org>
 2009-01-19 19:15:54 +00:00