Commit graph

8 commits

Author SHA1 Message Date
Mathieu Arnold
a0bcd2cf68 Use USES=pathfix where applicable.
PR:		213195
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D8093
2016-10-21 15:21:13 +00:00
Kurt Jaeger
04b3bb054f biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
2016-05-26 20:28:55 +00:00
Mathieu Arnold
7f4572eae4 Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat:	portmgr
Sponsored by:	Absolight
2016-04-01 13:29:15 +00:00
John Marino
7b3cd29d73 biology/htslib: Replace FreeBSD-specific fix with a generic one
This port will not build if ENOTRECOVERABLE is not defined, period.
It's not necessary to check OPSYS and version, just apply the fallback
definition if it's not defined.  This unbreaks DragonFly after last
commit.
2015-12-29 15:05:44 +00:00
Jason Unovitch
d5dffd3623 biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
2015-12-25 01:31:09 +00:00
Mathieu Arnold
c6457ffef4 Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
2015-05-06 15:16:53 +00:00
Bartek Rutkowski
e478a19bbf biology/htslib: update 1.1 -> 1.2.1
PR:		198291
Submitted by:	Reed Cartwright <cartwright@asu.edu>
2015-03-06 12:45:22 +00:00
Pawel Pekala
91bd9cdb68 HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.

WWW: http://www.htslib.org/

PR:		195591
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>
2014-12-14 22:35:07 +00:00