Viper is a minimalistic scientific plotter and run-time visualization module.
Viper has support for visualizing meshes and solutions in DOLFIN.
WWW: https://launchpad.net/fenics-viper
PR: ports/166913
Submitted by: jwbacon@tds.net
The Unified Form Language (UFL) is a domain specific language for declaration
of finite element discretizations of variational forms.
WWW: https://launchpad.net/ufl
PR: ports/166911
Submitted by: jwbacon@tds.net
The FInite element Automatic Tabulator FIAT supports generation of arbitrary
order instances of the Lagrange elements on lines, triangles, and tetrahedra.
WWW: https://launchpad.net/fiat
PR: ports/166910
Submitted by: jwbacon@tds.net
the evaluation of a multilinear form given in mathematical notation.
WWW: https://launchpad.net/ffc
PR: 166700
Submitted by: Jason Bacon <jwbacon@tds.net>
gnuplot to produce fig output and then mangle it to fill in the bars. Any number
of clustered datasets are supported, as well as automatic averaging and other
features.
WWW: http://www.burningcutlery.com/derek/bargraph/
PR: ports/166410
Submitted by: Dereckson <dereckson@gmail.com>
Approved by: wen@ (co-mentor)
Feature safe: yes
- add and update URLs of MASTER_SITES
- update author's email address
- use @dirrmtry
- change port category from math to science.
- Completes repo copy from math/ruby-netcdf -> science/ruby-netcdf
PR: ports/165314
Submitted by: Shin-ya Murakami <murashin@gfd-dennou.org>
Carve is a C++ library designed to perform boolean operations between two
arbitrary polygonal meshes. The standard union and intersection operations
are supported, as are symmetric and asymmetric difference. It is also
possible to implement custom operations using Carve, allowing results to be
formed from any combination of inputs.
Carve supports a variety of inputs, including both closed and open surfaces,
faces with arbitrary edge counts and datasets with multiple disjoint,
embedded or touching surfaces. Carve can also interpolate arbitrary values
across faces, meaning that CSG operations need not discard colour, texture
coordinates or other data.
WWW: http://code.google.com/p/carve/
Package KFAS provides funchtions for Kalman filtering, state,
disturbance and simulation smoothing, forecasting and simulation
of state space models. All functions can use exact diffuse
initialisation when distributions of some or all elements of initial
state vector are unknown. Filtering, state smoothing and simulation
functions use sequential processing algorithm, which is faster than
standard approach, and it also allows singularity of prediction
error variance matrix. KFAS also contains function for computing
the likelihood of exponential family state space models and function
for state smoothing of exponential family state space models.
WWW: http://cran.r-project.org/web/packages/KFAS/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
The queueing toolbox provides functions for queueing networks and Markov
chains analysis. This package can be used to compute steady-state performance
measures for open, closed and mixed networks with single or multiple job
classes. Mean Valud Analysis (MVA), convolution and various bounding
techniques are implemented. Various transient and steady-state performance
measures for Markov chains can als be computed (including state occupancy
probabilities, mean time to absorption, time-averaged sojourn times), both
for continuous-time and discrete-time chains.
One of the aims of this package is to make life easier for useRs
who deal with survey data sets. It provides an infrastructure for
the management of survey data including value labels, definable
missing values, recoding of variables, production of code books,
and import of (subsets of) SPSS and Stata files. Further, it provides
functionality to produce tables and data frames of arbitrary
descriptive statistics and (almost) publication-ready tables of
regression model estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
WWW: http://www.martin-elff.net/software/memisc/
devel/pure-readline: A readline interface for the Pure language
devel/pure-stldict: Pure interface to C++ STL map/unordered_map
devel/pure-stlvec: Pure interface to C++ STL vector
math/pure-mpfr: Multiprecision floats for Pure
x11-toolkits/pure-tk: A basic interface between Pure and Tcl/Tk
PR: ports/161799
Submitted by: Zhihao Yuan <lichray@gmail.com>
Sage is a free open-source mathematics software system licensed under the GPL.
It combines the power of many existing open-source packages into a common
Python-based interface.
Mission: Creating a viable free open source alternative to Magma, Maple,
Mathematica and Matlab.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is dicom. Digital communications in medicine (DICOM) file io. Depends on
Grassroots DICOM (GDCM).
4.7.2. The official release notes can be found at:
http://kde.org/announcements/announce-4.7.2.php
This release ships with many improvements. Read more about them here:
http://FreeBSD.kde.org/news.php#itemKDESC472availableinports
We'd like to say thanks to all testers and contributors, especially to
lwhsu@ for his effort on hosting our test packages.
PR: 156293 [1]
159219 [2]
160164 [3]
Submitted by: Oleg Sidorkin <osidorkin@gmail.com> [1]
Alvaro Castillo <gobledb@gmail.com> [2]
dkeav04@gmail.com [3]
Tested by: exp-run via pav
astro/gkrellsun Abandonware
astro/xrmap No more distfiles
audio/midimountain Abandonware
audio/gkrellmss Abandonware
audio/gnapster Abandonware
databases/xbase No more public distfiles
databases/xbsql No more public distfiles
games/gtkabale No more public distfiles
games/battleball No more public distfiles, does not compile on ia64 or sparc64
games/race No more public distfiles
games/stvef-paks No more public distfiles
games/stvef-server No more public distfiles
games/tome No more public distfiles
games/qkmj No more public distfiles
games/oilwar No more public distfiles
games/xbaby No more public distfiles
games/xword Abandonware
games/kslide No more public distfiles
graphics/xmrm No more public distfiles, does not compile on amd64 or sparc64
graphics/giftrans Upstream disappeared and distfile is not available
graphics/wildmagic BROKEN for more than 6 months, does not fetch
irc/ircd-rusnet No more public distfiles
irc/tkirc No more public distfiles
korean/mizifont No more public distfiles
lang/freetxl No more public distfiles
math/nsc2ke No more public distfiles
misc/mgp-mode.el No more public distfiles
multimedia/p5-RIFF-Info No more public distfiles
net/p5-Net-OpenDHT No more public distfiles
net/mudix No more public distfiles
net-im/newsbot No more public distfiles
net-im/libicq2000 Abandonware
net-im/gossip No longer maintain by upstream, use net-im/empathy instead
net-im/ickle Abandonware
net-mgmt/nipper BROKEN for more than 6 month, does not fetch
net-p2p/mldonkey-serverspy No more public distfiles
news/p5-Gateway No more public distfiles
print/epsmerge No more public distfiles
science/at No more public distfiles
science/pyvox No more public distfiles
security/p5-Email-Obfuscate No more public distfiles
security/libparanoia No more public distfiles
security/execwrap No more public distfiles
vulnerabilities listed in portaudit, and those
that depend on them - part 1
math/mupad
Relies on xpm, vulnerable since 2004-09-15
net-p2p/torrentflux
Vulnerable since 2006-10-07
net/tptest
Vulnerable since 2009-12-17
security/pgp6
Vulnerable since 2005-07-31
www/p5-RTx-RightsMatrix
Only works with www/rt36, which is FORBIDDEN
www/p5-RTx-Shredder
Only works with www/rt36, which is FORBIDDEN
www/p5-RTx-Statistics
Only works with www/rt36, which is FORBIDDEN
www/plone
Vulnerable since 2011-02-10
www/pyblosxom
Vulnerable since 2009-02-11
www/rt36
Vulnerable since 2009-12-09
www/zope-archetypes
Depends on www/plone, which is FORBIDDEN
www/zope-calendaring
Depends on www/plone, which is FORBIDDEN
www/zope-coreblog2
Depends on www/plone, which is FORBIDDEN
www/zope-i18nlayer
Depends on www/plone, which is FORBIDDEN
www/zope-plonelanguagetool
Depends on www/plone, which is FORBIDDEN
www/zope-simpleblog
Depends on www/plone, which is FORBIDDEN
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is mechanics.
Library with functions useful for numerical computation in classical mechanics.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is geometry.
Library for geometric computing extending MatGeom functions. Useful to create, transform, manipulate and display geometric primitives.
Math::Prime::XS detects and calculates prime numbers by either applying Modulo
operator division, the Sieve of Eratosthenes, a Summation calculation or Trial
division.
WWW: http://search.cpan.org/dist/Math-Prime-XS/
A collection of functions to create spatial weights matrix objects
from polygon contiguities, from point patterns by distance and
tesselations, for summarising these objects, and for permitting
their use in spatial data analysis, including regional aggregation
by minimum spanning tree; a collection of tests for spatial
autocorrelation, including global Moran's I, APLE, Geary's C,
Hubert/Mantel general cross product statistic, Empirical Bayes
estimates and Assuno/Reis Index, Getis/Ord G and multicoloured join
count statistics, local Moran's I and Getis/Ord G, saddlepoint
approximations and exact tests for global and local Moran's I; and
functions for estimating spatial simultaneous autoregressive (SAR)
lag and error models, impact measures for lag models, weighted and
unweighted SAR and CAR spatial regression models, semi-parametric
and Moran eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
WWW: http://cran.r-project.org/web/packages/spdep/
