Commit graph

10644 commits

Author SHA1 Message Date
TAKATSU Tomonari
6df5d51437 - Add new port: math/R-cran-Rmpfr
Arithmetic (via S4 classes and methods) for arbitrary precision
  floating point numbers, including transcendental ("special")
  functions. To this end, Rmpfr interfaces to the LGPL'ed MPFR (Multiple
  Precision Floating-Point Reliable) Library which itself is based
  on the GMP (GNU Multiple Precision) Library.

  WWW: https://cran.r-project.org/web/packages/Rmpfr/

  Submitted by:	Jukka A. Ukkonen <jau_AT_iki_DOT_fi> (via private e-mail)
2016-04-29 07:04:54 +00:00
TAKATSU Tomonari
d69db65a06 - Add new port: math/R-cran-gmp
Multiple Precision Arithmetic (big integers and rationals, prime
  number tests, matrix computation), "arithmetic without limitations"
  using the C library GMP (GNU Multiple Precision Arithmetic).

  WWW: https://cran.r-project.org/web/packages/gmp/
2016-04-29 06:56:37 +00:00
Sunpoet Po-Chuan Hsieh
fb5f11462b - Update to 1.27
Changes:	http://search.cpan.org/dist/Math-BigInt-Pari/CHANGES
2016-04-28 19:05:03 +00:00
Sunpoet Po-Chuan Hsieh
a985dfeafb - Update to 1.51
Changes:	http://search.cpan.org/dist/Math-BigInt-GMP/CHANGES
2016-04-28 19:04:59 +00:00
Sunpoet Po-Chuan Hsieh
93515fad56 - Update to 0.42
Changes:	http://search.cpan.org/dist/Math-BigInt-FastCalc/CHANGES
2016-04-28 19:04:54 +00:00
Sunpoet Po-Chuan Hsieh
ef6d0d5935 - Update to 0.260804
Changes:	http://search.cpan.org/dist/Math-BigRat/CHANGES
2016-04-28 19:04:50 +00:00
Sunpoet Po-Chuan Hsieh
82d6eeb816 - Update to 1.999722
Changes:	http://search.cpan.org/dist/Math-BigInt/CHANGES
With hat:	perl
2016-04-28 19:04:45 +00:00
Steve Wills
a302c6b949 math/rubygem-numru-units: remove unneeded USE_RAKE 2016-04-28 14:00:56 +00:00
Steve Wills
206e7e259b math/rubygem-fftw3: remove unneeded USE_RAKE 2016-04-28 13:44:24 +00:00
Steve Wills
b6414e87c5 math/rubygem-narray_miss: remove unneeded USE_RAKE 2016-04-28 13:42:40 +00:00
Kurt Jaeger
0a02c2e8b3 math/geogebra: 5.0.226.0 -> 5.0.231.0
- replace the general scripts so we do not need shell/bash
- pkg-message about linprocfs requirement

PR:		209105
Submitted by:	Zsolt Udvari <udvzsolt@gmail.com> (maintainer)
2016-04-28 08:41:38 +00:00
Wen Heping
5ac4520a68 - Add missing RUN_DEPENDS
PR:		209076
Submitted by:	jjachuf@gmail.com
2016-04-28 02:09:10 +00:00
Wen Heping
cc72d650bd - Add a MASTER_SITES mirror 2016-04-28 01:50:58 +00:00
Steve Wills
e6aa3f9eeb math/rubygem-narray: remove unneeded USE_RAKE 2016-04-27 23:30:19 +00:00
Steve Wills
deeacb5513 math/rubygem-numru-misc: remove unneeded USE_RAKE 2016-04-27 23:20:34 +00:00
Steve Wills
462519941e Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
Johan van Selst
886461fd8b Update to GAP 4.8.3 2016-04-27 20:30:14 +00:00
Steve Wills
b3e8fe8d85 create USES=gem and update rubygem- ports to use it
Note that for now ports still have to have USE_RUBY=yes to use USES=gem

PR:		209041
Differential Revision:	https://reviews.freebsd.org/D6070
2016-04-27 16:36:41 +00:00
Johan van Selst
5c3c35c117 Update to ocamlgraph 1.8.7 2016-04-26 20:49:08 +00:00
Vanilla I. Shu
1724d6927d Update to 1.14. 2016-04-26 03:30:02 +00:00
Nicola Vitale
bd8bca46ae - Update to 16.04.1
- Use GitHub instead of SourceForge as download site
- Pass --docdir option to configure to fix documentation path
- Install info file
- Add autoreconf and shared-mime-info to USES
- Build the port with version 3.0 of wxWidget
- Remove post-install target
- Remove files/patch-data_Makefile.am, files/patch-src_MathCtrl.cpp,
  files/patch-src_MathCtrl.h, files/patch-wxmaxima.desktop
- Add a patch to fix the installation directory of man page
- Update URL of web site
2016-04-24 21:21:15 +00:00
Danilo Egea Gondolfo
c9a5f25d5c - Update to 6.700.5 2016-04-24 17:19:46 +00:00
Florian Smeets
9782c85d2d Update to 0.2.18
PR:		208790
Submitted by:	phd_kimberlite@yahoo.co.jp (maintainer), dieterich@ogolem.org
Sponsored by:	Essen Linuxhotel Hackathon 2016
2016-04-24 08:09:27 +00:00
Steve Wills
86cd4fbe5a many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
Sunpoet Po-Chuan Hsieh
9a1f45d861 - Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
2016-04-20 20:42:39 +00:00
Alex Dupre
b664e8e728 Update to 3.1.4 release. 2016-04-19 12:40:24 +00:00
Marcelo Araujo
0043bb07a4 Hook new ports on its categories Makefile.
Reported by:	antoine
2016-04-19 05:44:27 +00:00
Maho Nakata
f18cdd2f47 Cosmetic updates
- Clean up a malloc() call to get rid of some warnings.
- Pet portlint by using "makepatch" for the patches, added the license,
  changed a tab after the WWW line.

PR: 208295
Submitted by: pfg@
2016-04-18 11:28:17 +00:00
Muhammad Moinur Rahman
a774725001 math/p5-Math-Algebra-Symbols: Update version 1.21=>1.27
- Shift to modbuild as per upstream
- Remove perl_OLD_COMMAND
2016-04-18 08:59:00 +00:00
Wen Heping
55b3c999f4 - Update to 1.2.3 2016-04-18 07:46:16 +00:00
Marcelo Araujo
f050cb4549 Luminol is a light weight python library for time series data analysis.
The two major functionalities it supports are anomaly detection and
correlation. It can be used to investigate possible causes of anomaly.

WWW: https://github.com/linkedin/luminol

Reviewed by:	mat, koobs, Python
Tested by:	gnn (earlier version)
Sponsored by:	gandi.net
Differential Revision:	https://reviews.freebsd.org/D5670
2016-04-18 05:31:57 +00:00
Bartek Rutkowski
970619ee28 math/geogebra: update 5.0.218.0 -> 5.0.226.0
PR:		208838
Submitted by:	Zsolt Udvari <udvzsolt@gmail.com> (maintainer)
2016-04-17 11:34:31 +00:00
Bartek Rutkowski
9156ed0175 math/clfft: update 2.10.1 -> 2.10.2
PR:		208789
Submitted by:	Johannes Dieterich <dieterich@ogolem.org> (maintainer)
2016-04-17 10:44:31 +00:00
Olivier Duchateau
2db0bd3d1b Update to 0.5.2 2016-04-16 09:26:13 +00:00
TAKATSU Tomonari
75debbbebd - Update to 7.1 2016-04-15 12:35:32 +00:00
TAKATSU Tomonari
f8b9327830 - Update to 0.6-4 2016-04-14 21:46:16 +00:00
Wen Heping
82eb352b5e - Update to 5.0.12 2016-04-14 06:33:36 +00:00
Danilo Egea Gondolfo
af02cda201 - Update to 6.700.4 2016-04-13 01:31:39 +00:00
Stephen Montgomery-Smith
3e9459b72e - Update to 2.3.0. 2016-04-11 04:02:57 +00:00
Steve Wills
062bb3bc9e math/p5-Statistics-Frequency: update to 0.04 2016-04-10 16:57:56 +00:00
Mikhail Teterin
22a22f7cb8 Upgrade from 2016.02.27 to 2016.04.10.
Notified by: portscout
2016-04-10 12:41:14 +00:00
Sunpoet Po-Chuan Hsieh
51e912c76a - Update to 2.5.2
Changes:	https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
2016-04-09 12:30:06 +00:00
TAKATSU Tomonari
8b023d0a63 - Update to 0.6.700.3.0 2016-04-09 07:45:17 +00:00
TAKATSU Tomonari
42c3937305 - Update to 7.0
- Fix LICENSE
2016-04-09 06:07:39 +00:00
John Marino
e20688dee9 math/pdal: Fix macro check and restore DragonFly support
Add __DragonFly__ definition check in two places to restore the build
on DF.  While here, change __FreeBSD__ value check to existance check
which was the intent I believe (although result is the same).

Approved by:	Restore DF functionality blanket
2016-04-08 15:13:53 +00:00
Pietro Cerutti
6621dfd6c0 math/yacas: update to 1.4.2, provide DOCS option to build the sphinx-based docs 2016-04-08 11:10:10 +00:00
Thierry Thomas
9c7e4d2f80 Mark BROKEN for 93i386:
error: integer constant is too large for 'long' type
2016-04-06 20:25:26 +00:00
Danilo Egea Gondolfo
ee730e2ec2 - Update to 6.700.3 2016-04-06 13:33:56 +00:00
Carlos J. Puga Medina
c45852130b - Update to 0.10.1 release
- Add GUI_VARS to catch INSTALLS_ICONS knob.
- Drop extra .include line
- Use post-install-GUI-on target.

Reviewed by:	mat, jbeich
Approved by:	junovitch (mentor)
2016-04-05 08:58:34 +00:00
Danilo Egea Gondolfo
ab42c250c4 - Update to 6.600.5 2016-04-05 01:20:56 +00:00
Baptiste Daroussin
34d4baa56c Create a proper library with a SONAME
PR:		208472
Submitted by:	phd_kimberlite@yahoo.co.jp (maintainer)
MFH:		2016Q2
2016-04-04 20:46:22 +00:00
Thomas Zander
ded4e36181 Update to upstream version 2.2.6
PR:		208481
Submitted by:	rhurlin@gwdg.de (maintainer)
2016-04-04 04:19:14 +00:00
Carlos J. Puga Medina
0c0a4e6807 - Use post-install-DOCS-on target
- Use post-install-EXAMPLES-on target

Approved by:	junovitch (mentor)
2016-04-04 00:55:33 +00:00
Carlos J. Puga Medina
d259dc3584 - Update to 0.10.0
- Update MAINTAINER to my @FreeBSD.org address
- Update GUI dependency to GTK3
- Add EXAMPLES option
- Fix pkg-plist

Changelog:

http://lists.gnu.org/archive/html/pspp-announce/2016-03/msg00000.html

Approved by:	junovitch (mentor)
2016-04-03 02:20:14 +00:00
Stephen Montgomery-Smith
2b8a2e507b - Update to 2.1.1. 2016-04-01 21:31:21 +00:00
Mathieu Arnold
8d6597e0bb Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.
With hat:	portmgr
Sponsored by:	Absolight
2016-04-01 14:16:16 +00:00
Mathieu Arnold
999161a9ed Fixup some whitespace at the beginning of lines problems.
With hat:	portmgr
Sponsored by:	Absolight
2016-04-01 13:18:17 +00:00
Sunpoet Po-Chuan Hsieh
d141d68c90 - Update to 2.5.1
Changes:	https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
2016-04-01 11:16:23 +00:00
Mathieu Arnold
5ef60cf65d Cleanup dependencies on lang/p5-Scalar-List-Utils.
The different cases are:

- Only bring it if the one bundled with Perl is outdated.
- The version bundled with all our Perl is sufficient.
- Scalar-List-Util is not really needed by the port.
  (looking for /(Sub|Scalar|List)::Util/ returns nothing.)

While there, do some minor cleanup that caught my eye.

PR:		208378
With hat:	perl@
Sponsored by:	Absolight
2016-03-31 15:23:13 +00:00
Dmitry Marakasov
2bbd54bad2 - Add LICENSE
- Add NO_ARCH
- Switch to options helpers
2016-03-28 23:05:17 +00:00
Dmitry Marakasov
f51a5a458c - Add LICENSE_FILE
- Switch to options helpers
- Regenerate patches with `make makepatch`
2016-03-28 23:04:06 +00:00
Raphael Kubo da Costa
5d623418d7 Update to 1.1.0.
Includes compatibility with the upcoming Boost 1.60. Original patch from the
maintainer himself, and additional adjustments by me. Also thanks to pi@ for
helping test-build the update.

PR:		207059
Submitted by:	coder@tuxfamily.org (maintainer, first version)
Approved by:	coder@tuxfamily.org (maintainer)
2016-03-28 19:21:17 +00:00
Olivier Duchateau
a12ab14203 Update to 1.11.0
Changes: https://github.com/numpy/numpy/blob/master/doc/release/1.11.0-notes.rst
2016-03-28 14:03:50 +00:00
David Naylor
30cb827613 math:R-cran-car: update to 2.1-2.
Changes:
 - Add lmtest and sandwich as test dependencies.

ChangeLog:
 - Modified scatter3d() so that plots can be embedded in HTML.
2016-03-28 06:45:00 +00:00
Sunpoet Po-Chuan Hsieh
98f1b692f4 - Update to 0.36
Changes:	http://search.cpan.org/dist/Math-GSL/Changes
2016-03-27 17:56:36 +00:00
Dmitry Marakasov
f5012ce944 - Update to 5.0.218.0 and add mirror, fixing fetch
- Fix LICENSE
- Simplify installation

PR:		208249
Submitted by:	udvzsolt@gmail.com (maintainer)
2016-03-25 12:34:46 +00:00
Wen Heping
a19d3ec272 - Update to 5.0.11 2016-03-25 06:17:20 +00:00
Wen Heping
fae48b7d4c Summary statistics, two-sample tests, rank tests, generalised linear models,
cumulative link models, Cox models, loglinear models, and general maximum
pseudolikelihood estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series linearisation
or replicate weights. Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. PPS sampling without replacement. Principal
components, factor analysis.

WWW: http://r-survey.r-forge.r-project.org/survey/
2016-03-25 06:16:15 +00:00
Wen Heping
e5eaafafd4 - Update to 1.0.1 2016-03-24 23:42:02 +00:00
Tijl Coosemans
77760fcb63 Make print/ghostscript9-agpl-base the default Ghostscript port. Upstream
changed the license to the AGPL 3 in version 9.07 so print/ghostscript9-base
is stuck at 9.06 which is almost 4 years old now.

Fix the logic in Uses/ghostscript.mk so "agpl" is treated as a real version
on its own instead of as a variant of other versions.

Fix print/ghostscript9-agpl-base to install eps2write.

Update math/asymptote to 2.37 to support newer Ghostscript.

PR:		208159
Exp-run by:	antoine
Approved by:	portmgr (antoine)
2016-03-24 15:47:50 +00:00
Koop Mast
eac2f6f450 Update gnumeric to 1.12.28.
PR:		208139
Submitted by:	lightside@gmx.com
2016-03-24 10:39:10 +00:00
Wen Heping
9bd87d4773 - Update to 1.0 2016-03-24 06:36:30 +00:00
Raphael Kubo da Costa
f342cf28c2 Update to 2.10.1.
PR:		208153
Submitted by:	dieterich@ogolem.org (maintainer)
2016-03-23 10:44:10 +00:00
Vsevolod Stakhov
7349ed49cd - Update libsodium to 1.0.8
- Bump revisions of all dependant ports

PR:		206482
Submitted by:	lev, w.schwarzenfeld@aon.at
2016-03-23 09:20:35 +00:00
John Marino
37f26af77e math/ogdf: Unbreak DragonFly
DragonFly needs the same modifications as FreeBSD.  They were carried
in dports before, but the macros were moved to new files.

Approved by:	Restore DF functionality blanket
2016-03-22 14:46:59 +00:00
Dmitry Sivachenko
eae5f107d0 Update to version 0.8.0 2016-03-22 10:08:27 +00:00
TAKATSU Tomonari
f56034a9dd - Update to 1.2.2 2016-03-20 04:49:55 +00:00
TAKATSU Tomonari
23c015d813 - Update to 0.6.600.4.0 2016-03-20 02:07:14 +00:00
Mathieu Arnold
acf37be223 Montly GH_* cleanup.
Sponsored by:	Absolight
2016-03-19 18:17:50 +00:00
Stephen Montgomery-Smith
7e6b625949 - Update to 2.4.1. 2016-03-19 15:52:48 +00:00
Stephen Montgomery-Smith
65df63e2ef - Update to 2.4.0. 2016-03-18 18:52:07 +00:00
Stephen Montgomery-Smith
09aa5d94f1 - Update to 1.0.9. 2016-03-18 17:42:03 +00:00
Stephen Montgomery-Smith
abe09b4d5d - Update to 2.1.2. 2016-03-17 19:56:32 +00:00
Danilo Egea Gondolfo
9012ab7548 - Update to 6.600.4 2016-03-15 20:44:12 +00:00
Raphael Kubo da Costa
5f54a52585 Change header installation location for kdelibs4-based ports.
Install x11/kdelibs4's headers into include/kde4 instead of include (which
consequently causes several other ports to have their installation paths
changed too).

The idea behind this is to reduce path conflicts between KDE4 ports and the
upcoming KDE Frameworks 5 ports that will be installed into include/KF5. If
we continue installing the KDE4 headers into include/, we can end up in a
situation like this:

    c++ [...] -I/usr/local/include -I/usr/local/include/KF5 file.cpp

If the KDE4 and KF5 versions of a port have the same headers, the KDE4 port
will unintentionally be picked up first and the build will fail.

Most of this huge patch is just PORTREVISION bumps, pkg-plist changes and a
few patches to FooConfig.cmake files to make them look into the kde4/
subdirectory in include/.

Changes which don't fit into the above are:
- deskutils/kdepimlibs4: Import an upstream patch to remove some double
  semicolons that cause base GCC to fail. They have always been present, but
  since the faulty header was referenced via -isystem /usr/local/include
  this never caused any problems.
- devel/subversion, devel/subversion18: Update patch-configure. The current
  kwallet changes there date back to 2011 (r272490), at a time when the
  build could fail when both KDE3 and KDE4 were installed. Replace those
  bits with a change I've submitted upstream to use the kde4-config program
  to determine where KDE4's headers and libraries are installed instead of
  assuming the headers are always in include/.

Once again, huge thanks to Tobias Berner <tcberner@gmail.com> for being the
first one to notice this problem when working on the KDE Frameworks 5 ports,
coming up with the solution and bugging me until I had time to work on this
and ask for the exp-run :-)

PR:		207906 (exp-run)
2016-03-15 12:35:56 +00:00
Raphael Kubo da Costa
bb27281dbc Update to 2.10.
Biggest improvement over the 2.6'er we had before: automatic kernel ejection
for better and more flexible performance.

PR:		206120
Submitted by:	Johannes Dieterich <dieterich@ogolem.org> (maintainer)
2016-03-14 11:13:46 +00:00
Raphael Kubo da Costa
6369e12333 Link against libsuperlu.so instead of libsuperlu.a.
Another problem coming from r410620: math/superlu no longer ships a static
library version, so use the shared library now.
2016-03-13 22:50:16 +00:00
Stephen Montgomery-Smith
c723f5241e - Update to 2.4.1. 2016-03-13 19:16:04 +00:00
Li-Wen Hsu
85f8920ff9 - Update to 0.5.0
PR:		207909
Submitted by:	Iblis Lin <iblis@hs.ntnu.edu.tw> (maintainer)
2016-03-12 15:01:44 +00:00
Kurt Jaeger
694cdca38e math/geogebra: 5.0.208.0 -> 5.0.212.0, change RUN_DEPENDS to USE_LINUX
Changes:
  http://www.geogebra.org/wiki/en/Reference:Changelog_5.0

PR:		207852
Submitted by:	Zsolt Udvari <udvzsolt@gmail.com> (maintainer)
Reported by:	marino
2016-03-09 19:51:11 +00:00
Antoine Brodin
1eff39459f - Remove OPENPYXL1 option from py-pandas
- Set an EXPIRATION_DATE for py-openpyxl1 (deprecated since May 2014)
2016-03-09 19:34:03 +00:00
Kurt Jaeger
9a3160ae5f math/coinmp: add conflict with ogdf
PR:		207531
Submitted by:	gahr
2016-03-09 19:10:34 +00:00
Kurt Jaeger
141a25e582 math/ogdf: 2012.07 -> 2015.05
Changes:
  http://www.ogdf.net/doku.php/tech:versions#v_201505_baobab

- Remove dependencies on math/abacus and math/coinmp, as they are
  now bundled into the OGDF source tarballs and compiled from there
  (COIN remains optional)
- Point MASTER_SITES to the official OGDF website
- Utilise USES=compiler:features to detect C++11 support, and
  add compiler flags -std=c++11 if so (required for build to complete
  without errors)
- Remove custom do-install recipe, and instead use default
  make install target
- Take maintainership

PR:		207531
Submitted by:	Ben Woods <woodsb02@gmail.com>
2016-03-09 16:49:38 +00:00
Wen Heping
8c2f29747a - Update to 1.0
PR:		207266
Submitted by:	takefu@airport.fm
2016-03-09 07:46:56 +00:00
TAKATSU Tomonari
e148b070e2 - Update to 0.1-12
- Update WWW in pkg-descr
2016-03-09 02:42:31 +00:00
Mathieu Arnold
a3091e9662 Unbreak and update to 7.3.1.
PR:		205896
Submitted by:	tkato432 yahoo com
Sponsored by:	Absolight
2016-03-08 16:04:07 +00:00
Mathieu Arnold
aa0ac7a449 Update to 7.3.8.
PR:		205895
Submitted by:	tkato432 yahoo com
Sponsored by:	Absolight
2016-03-08 16:03:59 +00:00
Mathieu Arnold
52474e7bba Update to 5.1.1.
PR:		203482
Submitted by:	tkato432 yahoo com
Sponsored by:	Absolight
2016-03-08 15:55:13 +00:00
Mathieu Arnold
81db090da8 Update to 2016.02.27
PR:		206895
Submitted by:	tkato432 yahoo com
Sponsored by:	Absolight
2016-03-07 23:01:06 +00:00
Sunpoet Po-Chuan Hsieh
4ad769de68 - Update to 3.0.0
- Add LICENSE_FILE
- Update IGNORE_WITH_PHP

Changes:	https://pecl.php.net/package-changelog.php?package=Bitset
2016-03-07 20:12:10 +00:00