See PR for signficant changes to math/R port including options,
build defaults, and patch updates.
PR: 211393
Submitted by: Joseph Mingrone (maintainer)
I made a mistake; some of the post-patch target does apply to DragonFly
as well as the pre-configure target. Tighten up which code is designated
as FreeBSD only. (again, a No-Op for FreeBSD)
Approved by: OSVERSION/OPSYS blanket
There are several OSVERSION checks but everything is specific to FreeBSD
so the entire block is wrapped with a single OPSYS check to minimize
changes to the makefile.
Approved by: OSVERSION/OPSYS blanket
file, so the order remains the same.
Every PHP (or Zend) extension now installs its own .ini file in
/usr/local/etc/php. A PHP extension will be automatically activated
when installed. The order into which extensions are loaded is
automatically guessed. In some very rare cases, the guess will be
wrong, and PHP_MOD_PRIO will need to be set. Refer to the USES=php
section of the Porter's Handbook for more information.
Convert ports touching etc/php/extensions.ini manually, or telling the
OP to do it.
And finally, bump PORTREVISION for all php extensions.
PR: 210697
Submitted by: mat
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D7022
- Convert to USES=localbase
- Move OPTIONS block to proper place, use helpers
- Argument --disable-dl for MYSQL=off was dropped because
it made configure script fail when IODBC=on
PR: 203448
Submitted by: pfg [1]
2. updated to version 4.0.3
deleted obsolete patch 'patch-libinterp-octave-value-ov-classdef'
Java and GUI are now optional
plist is now generated automatically
revised dependencies
PR: 211291
Submitted by: bsam (1), Alexander Sherikov (2)
influenceR: Software Tools to Quantify Structural Importance of
Nodes in a Network
Provides functionality to compute various node centrality measures
on networks. Included are functions to compute betweenness centrality
(by utilizing Madduri and Bader's SNAP library), implementations
of Burt's constraint and effective network size (ENS) metrics,
Borgatti's algorithm to identify key players, and Valente's bridging
metric. On Unix systems, the betweenness, Key Players, and bridging
implementations are parallelized with OpenMP, which may run faster
on systems which have OpenMP configured.
WWW: https://cran.r-project.org/web/packages/influenceR/
everything at once. Sometime, rename post-install into a options helper
target.
I did not fix ports that were such a mess that I could not figure out
what they really wanted to do. I also did not change ports that had
some version of an auto-plist code in post-install, for the same reason.
With hat: portmgr
Sponsored by: Absolight
Detailed maintainer log:
- Explicitly rely on required perl for the build
- math/R cannot be built in poudriere when math/atlas is chosen for the
BLAS implementation. It's not the default, so handle gracefully with
an IGNORE (could also have set MANUAL_PACKAGE_BUILD with
ATLAS_VARS= MANUAL_PACKAGE_BUILD=...)
- fix a type: DOC_BUILD_DEPEND -> DOCS_BUILD_DEPEND
PR: 210983
Submitted by: jrm@ftfl.ca (maintainer)
Simulates continuous distributions of random vectors using Markov
chain Monte Carlo (MCMC). Users specify the distribution by an R
function that evaluates the log unnormalized density. Algorithms
are random walk Metropolis algorithm (function metrop), simulated
tempering (function temper), and morphometric random walk Metropolis
(Johnson and Geyer, Annals of Statistics, 2012, function morph.metrop),
which achieves geometric ergodicity by change of variable.
WWW: https://cran.r-project.org/web/packages/mcmc/
Cadabra is a symbolic computer algebra system (CAS) designed
specifically for the solution of problems encountered in field
theory. It has extensive functionality for tensor computer algebra,
tensor polynomial simplification including multi-term symmetries,
fermions and anti-commuting variables, Clifford algebras and Fierz
transformations, component computations, implicit coordinate
dependence, multiple index types and many more. The input format
is a subset of TeX.
WWW: http://cadabra.science/
PR: 210476
Submitted by: Yuri Victorovich <yuri@rawbw.com>
PR: 210595
Submitted by: yuri@rawbw.com
PySparse extends the Python interpreter by a set of sparse matrix
types holding double precision values. PySparse also includes modules
that implement:
- iterative methods for solving linear systems of equations
- a set of standard preconditioners
- an interface to a direct solver for sparse linear systems of
equations (SuperLU)
- a Jacobi-Davidson eigenvalue solver for the symmetric, generalised
matrix eigenvalue problem (JDSYM)
https://github.com/PythonOptimizers/pysparse
