biology/phrab
biology/phred
biology/consed
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
PR: 191336
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
ChangeLog:
* residualPlot error when using 'type="rstudent" has been fixed.
* Minor change to "recode" documentation; improved error checking in
recode().
* Fixed a bug in gamLine with non-canonical links. (Thanks to Hani Christoph)
* Added has.intercept.multinom() to make Anova() work with multinom objects
fit to a dichotomous response (after bug report by Kristian Hovde Liland).
* Replaced vif.lm() with vif.default() to cover wider variety of models
(after question by Laura Rigg about gls models).
* Diagonal panels in scatterplotMatrix() (except for histograms) show
groups separately when plotted by groups (suggestion by Erich Neuwirth).
* Added vcov. argument to Anova.lm().
- (re)take maintainership
- Add patch to fix "Failed to install service" issue occurs in recent windows
(see http://community.zenoss.org/message/48714)
- Make python bindings optional. it's mainly used in ZENOSS internally
and should be optional.
PR: 192853
Submitted by: KIKUCHI Koichiro
File "/usr/local/lib/python2.7/site-packages/pkg_resources.py", line 1514, in _get
with open(path, 'rb') as stream:
IOError: [Errno 13] Permission denied: '/usr/local/lib/python2.7/site-packages/zope.minmax-1.1.2-py2.7.egg-info/namespace_packages.txt'
While here, modernize a bit
liballium attempts to reduce the amount of boilerplate code required to
implement pluggable transports for Tor in C or C++.
WWW: https://github.com/yawning/liballium
obfsclient is a C++11 Tor-managed pluggable transport client
implementation of the following protocols:
obfs2 - The Twobfuscator
obfs3 - The Threebfuscator
ScrambleSuit - Experimental
WWW: https://github.com/yawning/obfsclient
PR: 187926, 187927
Submitted by: fk@fabiankeil.de
File "/usr/local/lib/python2.7/site-packages/pkg_resources.py", line 1514, in _get
with open(path, 'rb') as stream:
IOError: [Errno 13] Permission denied: '/usr/local/lib/python2.7/site-packages/WebError-0.10.3-py2.7.egg-info/entry_points.txt'
While here, modernize a bit
A fork of PrBoom with uncapped framerate, variable gamespeed, re-record,
walkcam, chasecam, full mouselook, fov and other features without loss of
compatibility with original DOOM.
WWW: http://prboom-plus.sourceforge.net/
PR: 188932
Submitted by: thiagohero501@gmail.com
Geeknote is a command line client for Evernote.
Features:
* Create notes in your Evernote account
* Create tags, notebooks
* Use Evernote search in console with different filters
* Edit notes in console using any editor: nano, vim, emacs, mcedit
* Sync your local files, directories with Evernote
* Use Evernote with cron or any scripts
WWW: http://www.geeknote.me
Line 606 of the vendor Makefile has a malformed error message that comes
up if the makefile is given no target. For reasons I don't understand,
the gmake on FreeBSD tolerates it and the same exact gmake on DragonFly
catches it. Just amend the sed command the remove the line completely
as it's never executed in the ports framework.
DragonFly does not have Kerberos in the base system as this port assumes.
In order to build squid33, DF has a dependency on krb5 packages. Morever,
the configure check assumes Kerberos is in the base system, so it fails
to configure. Disable the check completely as it's guaranteed to pass on
FreeBSD and the sought headers are installed with krb5.
