Commit graph

1497 commits

Author SHA1 Message Date
Wen Heping
b057defb54 - Update to 2.3.5
- Add LICENSE
- Remove pkg-message since license changed upstream
- Do not install test files as example
2013-08-20 14:11:56 +00:00
John Marino
b0b3dcecc0 biology/tinker: Regenerate distinfo to unbreak fetch
Apparently the distfile was rerolled.  The sizes of the file are only a few
bytes apart.  Since the master site never changed, it's reasonable just to
regenerate the distinfo and bump the PORTREVISION.

PR:		180664
Approved by:	bapt/culot (mentors, implicit)
2013-08-18 11:38:34 +00:00
Gerald Pfeifer
41e60477bd Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
Right now this is a noop in the former case and a noop in the latter
case unless lang/gcc44 has been installed explicitly.

This puts a bit more emphasis on standardizing on a canonical version
"current" GCC and makes it easier to update that canonical version
by changing the default in Mk/bsd.gcc.mk and updating the lang/gcc port.

That is, USE_GCC=yes means "use a decent/modern version of GCC" without
having to worry about details.

Approved by:	portmgr (bdrewery)
2013-08-17 16:27:24 +00:00
Alex Kozlov
d4041784dc - Remove MAKE_JOBS_SAFE variable
Approved by:	portmgr (bdrewery)
2013-08-14 22:35:50 +00:00
John Marino
7e734bd16c biology/libgenome: Mark jobs unsafe
Approved by: 	bapt/culot (mentors, implicit)
2013-08-14 09:53:39 +00:00
Dirk Meyer
b83d7bf933 - update libdg to 2.1.0 2013-08-09 14:05:52 +00:00
Sunpoet Po-Chuan Hsieh
1104169569 - Pet portlint: remove blank line among *_DEPENDS 2013-08-06 13:03:54 +00:00
Andrej Zverev
2c25cf429d - Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
2013-08-06 08:50:49 +00:00
Mathieu Arnold
62a41b423b - Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
2013-08-03 13:44:00 +00:00
Andrej Zverev
99ad912735 - Convert to new perl framework
- Trim Makefile header
2013-08-03 08:45:51 +00:00
Mathieu Arnold
4819ca343b - Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
2013-08-02 18:52:07 +00:00
Philippe Audeoud
fc53f40978 - Update to 1.6
- Convert to new perl5 framework
- Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes
2013-08-01 13:15:48 +00:00
Rene Ladan
66fee90926 KDE3 and QT3 expired on 2013-07-01, remove these ports.
Unfortunately, this also affects some ports using QT3 as a GUI toolkit.

Changes to infrastructure files:
- bsd.kde.mk : obsolete, remove
- bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while
- CHANGES : document the removals from bsd.port.mk
- KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead)
- MOVED : add the removed ports

PR:		ports/180745
Submitted by:	rene
Approved by:	portmgr (bapt)
Exp-run by:	bapt
2013-07-26 19:19:20 +00:00
Wen Heping
c65306f29b - Update to 3.0
- Convert to optionsNG
- Drop maintainership
2013-07-20 15:08:45 +00:00
Wen Heping
881d1953d7 - Update to 0.56 2013-07-20 10:04:32 +00:00
Wen Heping
75445be75e - Update to 2.37
Changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.37/Changes
2013-07-20 10:03:10 +00:00
Wen Heping
50ee70d703 - Update to 36.3.6
- Drop maintainership
2013-07-19 14:08:02 +00:00
Martin Wilke
c931ed3f31 - Update to 6.2.06
PR:		180518
Submitted by:	Ports Fury
2013-07-15 14:50:22 +00:00
Martin Wilke
0896ca6624 - Update to 4.4.2
PR:		180515
Submitted by:	Ports Fury
2013-07-15 14:49:02 +00:00
Sunpoet Po-Chuan Hsieh
c2d1a14c7c - Update to 7.31.0
- Bump PORTREVISION for ftp/curl shlib change
- Add TEST_DEPENDS
- Convert to new options framework
- Adjust options:
  - Add COOKIES
  - Add CYASSL, NSS, POLARSSL, THREADED_RESOLVER, TLS_SRP [1]
  - Add GSSAPI and SPNEGO [2]
  - Remove KERBEROS4
  - Rename LIBIDN to IDN
  - Remove TRACKMEMORY [1]
- Sort option handler
- Add SLAVEDIRS: ftp/curl-hiphop
- Cosmetic change
- Cleanup Makefile header
- While I'm here, fix typo (PORTREVSION) in x11-wm/ede/Makefile

Changes:	http://curl.haxx.se/changes.html
PR:		ports/172325 (-exp run), ports/177369 (based on) [1]
Submitted by:	Hirohisa Yamaguchi <umq@ueo.co.jp> [1], hrs (via email) [2]
Exp run by:	miwi
2013-07-11 16:26:26 +00:00
Baptiste Daroussin
0e92144c9f Convert from USE_MOTIF to USES=motif 2013-07-10 07:33:24 +00:00
Baptiste Daroussin
bad37a6cd4 Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
2013-07-09 21:49:35 +00:00
Antoine Brodin
4cf302d6b0 Fix some PORT_OPTIONS conversions 2013-06-30 20:53:06 +00:00
Baptiste Daroussin
5b4f8f3bbd Convert to USES=imake
Trim headers
2013-06-28 18:32:25 +00:00
Raphael Kubo da Costa
9db47c1f7c Fix some screw ups introduced in r319847.
I'm not sure if the submitter of ports/179224 didn't even test his patch or
if the distfile was re-rolled in a bizarre way.

Anyway, fix distfile and also cd into the correct directories to actually
build the port.

PR:		ports/179790
2013-06-24 18:09:52 +00:00
Boris Samorodov
747a2e993f Remove stale (since r321246) pkg-plist file. 2013-06-19 21:04:36 +00:00
Boris Samorodov
e92c6f2a98 . introdice optionsNG to the port;
. remove shlib ABI version from LIB_DEPENDS;
. introduce EXAMPLE option (do not install examples to DOCSDIR);
. bump PORTREVISION;
. get use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile;
. get rid of pkg-plist;
. trim Makefile heades;
. remove acticle from COMMENT;
. simplify install commands.
2013-06-19 20:06:59 +00:00
Boris Samorodov
6c45647e07 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. introduce EXAMPLES option (do not install examples to DOCSDIR);
. bump PORTREVISION;
. make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile;
. get rid of pkg-plist;
. simpify install commands.
2013-06-19 20:01:30 +00:00
Boris Samorodov
75e93c8196 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. mute mdir commands and unmute install commands;
. do not use mkdir for parent directories (mkdir implies "-p");
. introduce EXAMPLE option (do not install examples to DOCSDIR);
. bump PORTREVISION;
. make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile;
. get rid of pkg-plist;
. use standard DOCSDIR and EXAMPLESDIR (instead of a PREFIX/foo/bar path);
. trim Makefile headers.
2013-06-19 19:54:13 +00:00
Boris Samorodov
0c61d2954c . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.
2013-06-19 19:20:25 +00:00
Boris Samorodov
8def27fa74 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. mute mkdir;
. use PLIST_FILES and PORTDOCS at Makefile;
. remove pkg-plist;
. trim Makefile headers;
. remove article from COMMENT;
. pet portlint -- use opne space after WWW: at pkg-descr.
2013-06-19 19:15:14 +00:00
Boris Samorodov
de034ce0d6 Use optionsNG for DOCS. 2013-06-19 19:07:35 +00:00
Boris Samorodov
6c227ca468 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PORTDOCS at Makefile (thus simplify pkg-plist);
. use plain install instead of a .for loop;
. trim Makefile headers.
2013-06-19 19:05:47 +00:00
Boris Samorodov
0ed60a672e . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES, PORTDATA and PORTDOCS;
. use standard DATADIR and DOCSDIR (rather PREFIX/foo/bar);
. remove pkg-plist.
2013-06-19 19:01:47 +00:00
Boris Samorodov
c23d4e5464 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. trim Makefile headers.
2013-06-19 18:56:37 +00:00
Boris Samorodov
a4c819f709 . add license (GPLv2);
. bump PORTREVISION;
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. trim Makefile headers.
2013-06-19 18:53:54 +00:00
Boris Samorodov
e4da7811ba . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use f instead of file for a variable (portlint warns against file);
. do not mute install commands;
. remove article from COMMENT;
. trim Makefile headers;
. pet portlint: use one space after WWW: at pkg-descr.
2013-06-19 18:51:16 +00:00
Boris Samorodov
f257e1ad16 . remove pkg-plist (along with the previous commit). 2013-06-19 18:44:32 +00:00
Boris Samorodov
cb68e7ac4a . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PORTDOCS and PORTDATA at makefile;
. mute mkdirs;
. add padding to PKGMESSAGE;
. remove article from COMMENT.
2013-06-19 18:43:13 +00:00
Boris Samorodov
52d1606f7c . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
. use PORTEXAMPLES at Makefile;
. trim Makefile headers.
2013-06-19 18:38:46 +00:00
Boris Samorodov
7ce5fafe53 . add license (GPLv2);
. bump PORTREVISION;
. trim article from COMMENT;
. trim Makefile headers.
2013-06-19 16:36:53 +00:00
Boris Samorodov
2f705dfa96 . pet portlint: add USE_LDCONFIG;
. bump PORTREVISION.
2013-06-19 15:43:56 +00:00
Boris Samorodov
0fe9c450a3 . trim Makefile headers;
. remove the indefinite article from COMMENT.
2013-06-19 15:39:18 +00:00
Boris Samorodov
3d4edf2fac . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES and PORTDOCS;
. remove pkg-plist (4 lines).
2013-06-19 14:10:02 +00:00
Boris Samorodov
1eb6ad8592 . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. remove LICENSE_FILE for a standard license (GPLv2);
. trim Makefile headers.
2013-06-19 13:35:55 +00:00
Boris Samorodov
f0b8908924 Index: Makefile
===================================================================
--- Makefile	(revision 321238)
+++ Makefile	(working copy)
@@ -1,9 +1,5 @@
-# New ports collection makefile for:	seqio
-# Date created:				17 August 2001
-# Whom:					Tony Maher
-#
+# Created by: Tony Maher
 # $FreeBSD$
-#

 PORTNAME=	seqio
 PORTVERSION=	1.2.2
@@ -13,38 +9,32 @@
 DISTNAME=	${PORTNAME}

 MAINTAINER=	ports@FreeBSD.org
-COMMENT=	A set of C functions which can read/write biological sequence files
+COMMENT=	Set of C functions which can read/write biological sequence files

 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}

 EXAMPLES=	example1.c example2.c example3.c example4.c seqio.c \
 		seqio.h Makefile
 PROGRAMS=	fmtseq grepseq idxseq typeseq wcseq
+PLIST_FILES+=	${PROGRAMS:S,^,bin/,}
+PORTEXAMPLES=	*
+PORTDOCS=	*

+OPTIONS_DEFINE=	DOCS EXAMPLES
+
+.include <bsd.port.options.mk>
+
 do-install:
-	cd ${WRKSRC}; \
-	for file in ${PROGRAMS}; do \
-		${INSTALL_PROGRAM} $$file ${PREFIX}/bin; \
-	done
-.if !defined(NOPORTEXAMPLES)
-	${MKDIR} ${EXAMPLESDIR}
-	cd ${WRKSRC}; \
-	for file in ${EXAMPLES}; do \
-		${INSTALL_DATA} $$file ${EXAMPLESDIR}; \
-	done
+	${INSTALL_PROGRAM} ${PROGRAMS:S,^,${WRKSRC}/,} ${PREFIX}/bin
+.if ${PORT_OPTIONS:MEXAMPLES}
+	@${MKDIR} ${EXAMPLESDIR}
+	${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/,} ${EXAMPLESDIR}
 .endif
-.if !defined(NOPORTDOCS)
-	${MKDIR} ${DOCSDIR}
-	${MKDIR} ${DOCSDIR}/html
+.if ${PORT_OPTIONS:MDOCS}
+	@${MKDIR} ${DOCSDIR}/html
 	${INSTALL_DATA} ${WRKSRC}/bioseq.txt ${DOCSDIR}
-	cd ${WRKSRC}/doc; \
-	for file in *.doc; do \
-		${INSTALL_DATA} $$file ${DOCSDIR}; \
-	done
-	cd ${WRKSRC}/html; \
-	for file in *.html; do \
-		${INSTALL_DATA} $$file ${DOCSDIR}/html; \
-	done
+	${INSTALL_DATA} ${WRKSRC}/doc/*.doc ${DOCSDIR}
+	${INSTALL_DATA} ${WRKSRC}/html/*.html ${DOCSDIR}/html
 .endif

 .include <bsd.port.mk>
2013-06-19 13:09:19 +00:00
Boris Samorodov
4392a3472d . NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES and PORTDOCS;
. get rid of  pkg-plist;
. pet portlint: use one space after WWW: at pkg-descr;
. trim Makefile headers;
. remove the indefinite article from COMMENT.
2013-06-19 12:43:28 +00:00
Andrej Zverev
b62e166e01 - Avoid of using SITE_PERL
- Remove depend on DB_File.pm since it part of perl distribution

PR:		ports/178877
Submitted by:	az
Approved by:	matainer (timeout)
2013-06-07 06:51:42 +00:00
Martin Wilke
db74061cad - Update to 3.6.9.5
PR:		179224
Submitted by:	Ports Fury
2013-06-04 10:02:30 +00:00
Martin Wilke
0ed7cc3196 - Fix build with clang
PR:		179215
Submitted by:	Ports Fury
2013-06-04 08:26:03 +00:00