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8 commits

Author SHA1 Message Date
Kurt Jaeger
04b3bb054f biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 
Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
 2016-05-26 20:28:55 +00:00
Dmitry Marakasov
e87a8bd319 - Fix trailing whitespace in pkg-messages 
Approved by:	portmgr blanket
 2016-05-19 11:09:14 +00:00
Mathieu Arnold
7f4572eae4 Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c. 
With hat:	portmgr
Sponsored by:	Absolight
 2016-04-01 13:29:15 +00:00
John Marino
e8ac90dd1c biology/samtools: document ncurses requirement (USES+=ncurses) 
approved by:	infrastructure blanket
 2016-02-01 21:59:14 +00:00
Jason Unovitch
d5dffd3623 biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
 2015-12-25 01:31:09 +00:00
Mathieu Arnold
c6457ffef4 Update ports in the [bcd]* categories to not use GH_COMMIT. 
With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
 2015-05-06 15:16:53 +00:00
Bartek Rutkowski
9b9d6e55f6 biology/samtools: update 1.1 -> 1.2 
PR:		198292
Submitted by:	Reed Cartwright <cartwright@asu.edu>
 2015-03-06 12:53:58 +00:00
Pawel Pekala
dc1d64b572 Samtools implements various utilities for post-processing alignments in the 
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

WWW: http://www.htslib.org/

PR:		195592
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>
 2014-12-15 21:59:19 +00:00