Simulates continuous distributions of random vectors using Markov
chain Monte Carlo (MCMC). Users specify the distribution by an R
function that evaluates the log unnormalized density. Algorithms
are random walk Metropolis algorithm (function metrop), simulated
tempering (function temper), and morphometric random walk Metropolis
(Johnson and Geyer, Annals of Statistics, 2012, function morph.metrop),
which achieves geometric ergodicity by change of variable.
WWW: https://cran.r-project.org/web/packages/mcmc/
Cadabra is a symbolic computer algebra system (CAS) designed
specifically for the solution of problems encountered in field
theory. It has extensive functionality for tensor computer algebra,
tensor polynomial simplification including multi-term symmetries,
fermions and anti-commuting variables, Clifford algebras and Fierz
transformations, component computations, implicit coordinate
dependence, multiple index types and many more. The input format
is a subset of TeX.
WWW: http://cadabra.science/
PR: 210476
Submitted by: Yuri Victorovich <yuri@rawbw.com>
PR: 210595
Submitted by: yuri@rawbw.com
PySparse extends the Python interpreter by a set of sparse matrix
types holding double precision values. PySparse also includes modules
that implement:
- iterative methods for solving linear systems of equations
- a set of standard preconditioners
- an interface to a direct solver for sparse linear systems of
equations (SuperLU)
- a Jacobi-Davidson eigenvalue solver for the symmetric, generalised
matrix eigenvalue problem (JDSYM)
https://github.com/PythonOptimizers/pysparse
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The last change submitted or approved by Horia in Bugzilla dates back to
September 2015. Since then, all commits to his ports were landed by others
after the maintainer timeout period expired (see r383744, r405055, r405057,
r400461 and r414655, for example).
Horia did show interest in coming back after I sent a private email a few
months ago, but since nothing has changed it is better to reassign his ports
back to the heap.
Differential Revision: https://reviews.freebsd.org/D5980
- Adjust dependencies, 'numpy/core/multiarray.so' is also linked to
math/openblas (reported by QA script)
- Add patches in order to detect 'sys/endian.h' header
* Update DISTVERSION and distinfo checksum (965)
* Add CONFIGURE_SCRIPT (filename change to .sh extension)
* Add DEBUG option
* Use --trace, --stats (and --logs) with DEBUG, rather than in the
default (non-debug) build.
* Specify --static explicitly even though its built to avoid possible
future footshooting.
http://fmv.jku.at/picosat/NEWS
There are a couple of enhancements that can be made to math/R
regarding optimization: one would be to enable LTO and OpenMP
whenever the compiler supports it, another one would be to allow
linking to OpenBLAS besides ATLAS or R's internal BLAS implementation.
The patch was inspired by math/octave's handling of BLAS.
PR: 207425
Submitted by: elferdo@gmail.com
Approved by: bf (maintainer timeout)
This only affects "Created by" lines with one exception: devel/uclcmd. There the maintainer is changed. This was overlooked in r416918.
Approved by: junovitch (mentor)
p5-Term-ReadLine-(Gnu,Perl,TTYtter).
I can't find any reason for p5-ReadLine-Gnu to have been added as
ReadLine-Gnu instead of Term-ReadLine-Gnu twenty years ago.
devel/p5-Term-ReadLine-Perl was added as a dupplicate a few years back
where it should not have, so change its maintainer to be perl@ like
devel/p5-ReadLine-Perl had.
Sponsored by: Absolight
