It is designed to be enjoyed using keyboard. Result is shown in
scrollable display, history of expressions is available with up
and down arrow.
Some other features:
optional keypad, syntax highlight, matched parenthesis indicator,
just-in-time calculation (show result even before you finish typing)
and autocomplete for variables.
WWW: http://speedcrunch.digitalfanatics.org/
PR: ports/114969
Submitted by: Yinghong.Liu <relaxbsd at gmail.com>
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
maintaining file-format compatibility with Unidata's NetCDF. NetCDF gives
scientific programmers a space-efficient and portable means for storing data.
However, it does so in a serial manner, making it difficult to achieve high
I/O performance. By making some small changes to the API specified by NetCDF,
we can use MPI-IO and its collective operations.
WWW: http://trac.mcs.anl.gov/projects/parallel-netcdf
PR: ports/112265
Submitted by: Chao Shin <quakelee at cn.FreeBSD.org>
as a short-term measure to facilitate inter-operation of functional MRI
data analysis software packages.
WWW: http://nifti.nimh.nih.gov/
PR: ports/112183
Submitted by: Jason W. Bacon
2007-03-28 graphics/hobbes-icons-xpm: Archaic port
2007-04-10 japanese/firefox-ja: Incomplete pkg-plist
2007-04-10 japanese/lookup-xemacs: Does not install
2007-04-10 lang/linux-hla: Does not compile
2007-04-10 mail/vmailmgr: Incomplete pkg-plist
2007-04-10 multimedia/qvamps: Touches filesystem prior to 'make install'
2007-03-10 net-mgmt/sting: Broken on all supported versions of FreeBSD
2007-04-10 net-mgmt/tas: Incomplete pkg-plist
2007-04-10 net-p2p/verlihub-plugins: Does not configure, it needs at least verlihub 1.0
2007-04-10 news/inn-stable: Fails to patch
2007-04-10 palm/malsync: Does not build with new pilot-link
2007-04-10 russian/elm.language: Leaves behind files on deinstall
2007-04-10 russian/pine.language: Leaves behind config file on deinstall
2007-04-01 science/py-scipy03: Replaced by py-scipy
2007-04-10 security/php4-cryptopp: Does not compile
calculation program calculates energy, molecular structure,
vibrational frequencies from the basic principle of quantum mechanics.
A site license for GAMESS is available at no cost to both academic
and industrial users. Please refer
http://wwwmsg.fi.ameslab.gov/GAMESS/dist.menu.html
for details.
We also included simple launcher called `gamess'
for your convenience. You don't set any environment variable
to run gamess. Just type
% gamess <somefile.inp>
is enough.
WWW: http://wwwmsg.fi.ameslab.gov/GAMESS/
I also recived an e-mail from Mike Schmidt <mike@si.fi.ameslab.gov>
as my inquery.
> I'm maintaining gamess port for FreeBSD only for myself,
> but I'd like to maintain this program at ports tree so that
> everyone can install gamess for FreeBSD very easily like following:
> obtain gamess-current.tar.gz then, put it to some directory, then:
>
> % mkdir /usr/ports/distfiles/gamess.20060907.4
> % cp gamess-current.tar.gz /usr/ports/distfiles/gamess.20060907.4/
> % cd /usr/ports/science/gamess
> % make
> % sudo make install
> ...
> will finish the compilation and installation.
>
> So I'd like to ask you about it.
>
> Can I put port such a skeleton, which is merely an installation
> instruction for FreeBSD ports tree like MPQC?
> http://www.freebsd.org/cgi/cvsweb.cgi/ports/science/mpqc/
> Everyone can access this instruction publically.
> Of course, I don't expose gamess archive for public, and if gamess =20
> archive
> is not found, make stops like:
>
>> % make
>> =3D=3D=3D> gamess-20060907.4 You must manually get the source =20
>> distribution from master site. http://www.msg.ameslab.gov/GAMESS/=20
>> dist.menu.html. Please selsect "Source code distribution", and =20
>> check on "running on Intel compatible PC running Linux". You must =20
>> have license, but freely obtainable..
>> *** Error code 1
>
Mike Schmidt <mike@si.fi.ameslab.gov> replied as:
> I do not really object to your idea about "make" for BSD, since
> you don't include source code with it. but don't really understand
> why it would be necessary.
:)
TAMS Analyzer for Macintosh OS X. Note, at some point the two projects will
have identical file formats, at which point the initial G (for GNUstep)
will be dropped. GTAMS stands for GNUstep Text Analysis Markup System, it
is a convention for identifying themes in text. The software offers a wide
range of tools for applying themes to texts and identifying patterns of
themes within and between texts.
PR: 103680
Submitted by: Gürkan Sengün
project at INRIA-Rocquencourt.
It is intended to display computation results (in mechanics of the solids or
fluids, thermics, electromagnetism, etc.) on grids 2d (triangles and
quadrangles), 3d (tetrahedrons or hexahedrons) or surfaces (triangles and
quandrangles).
segmentation. Segmentation is the process of identifying and classifying
data found in a digitally sampled representation. Typically the sampled
representation is an image acquired from such medical instrumentation as
CT or MRI scanners. Registration is the task of aligning or developing
correspondences between data. For example, in the medical environment,
a CT scan may be aligned with a MRI scan in order to combine the
information contained in both.
WWW: http://www.itk.org
Port maintainer: Jason W. Bacon
bacon@smithers.neuro.mcw.edu
PR: ports/95166
Submitted by: bacon at smithers.neuro.mcw.edu
analysis tool written with Gtk+.
It can be used for all most frequently used data processing operations
including: leveling, false color plotting, shading, filtering, denoising, data
editing, integral transforms, grain analysis, profile extraction, fractal
analysis, and many more. The program is primarily focused on SPM data analysis
(e.g. data obtained from AFM, STM, NSOM, and similar microscopes). However, it
can also be used for analysis of SEM (Scanning Electron Microscopy) data or any
other 2D data.
WWW: http://gwyddion.net/
PR: ports/101773
Submitted by: David Necas <yeti@gwyddion.net>
__________________
OOF is designed to help materials scientists calculate macroscopic
properties from images of real or simulated microstructures. It is
composed of two cooperating parts: ppm2oof and oof. ppm2oof reads images
in the ppm (Portable Pixel Map) format and assigns material properties to
features in the image. oof conducts virtual experiments on the data
structures created by ppm2oof to determine the macroscopic properties of
the microstructure. Currently, the programs calculate stresses and
strains, but someday we hope to include thermal, electric, and magnetic
field calculations.
Check the Homepage for online manuals and new versions
WWW: http://www.ctcms.nist.gov/oof/
PR: ports/98601
Submitted by: Pedro F. Giffuni
MINC (Medical Imaging NetCDF) is a medical imaging data format and an
associated set of tools and libraries. MINC was created in 1993 by Peter
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
Institute. Many others have contributed to the design and implementation
MINC over the years.
PR: ports/93495
Submitted by: Jason Bacon <bacon (at) smithers.neuro.mcw.edu>
Repocopied by: marcus
The function of ElmerPost is to visualize the numerical results produced
by ElmerSolver and other finite element programs. ElmerPost operates with
the data specific to the unknown variables (temperature, velocity,
pressure, displacement etc.) defined in the mathematical model. ElmerPost
plots e.g. contours and vector fields, and can manipulate computed data
into another form using the built-in MATC-language (for instance heat
fluxes from temperature distributions).
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
ElmerFront is a tool for initializing the computational process in Elmer.
It communicates with external software producing geometrical data, i.e.,
CAD files and computational meshes. ElmerFront generates its own finite
element meshes, allows the user to build mathematical models graphically,
and finally produces input data for ElmerSolver.
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
ElmerSolver is thus an independent module that processes the computational
mesh and the model input file containing references to the selected
equations and model parameters. ElmerSolver makes the equations into a
discrete form, handles coupled systems, non-linearities and
time-dependences, and provides output data for visualization.
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
Elmer is an open-source computational tool for multi-physics problems.
Elmer includes physical models of fluid dynamics, structural mechanics,
electromagnetics and heat transfer. These are described by partial
differential equations which Elmer solves by the Finite Element Method (FEM).
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
Elmer is an open-source computational tool for multi-physics problems.
Elmer includes physical models of fluid dynamics, structural mechanics,
electromagnetics and heat transfer. These are described by partial
differential equations which Elmer solves by the Finite Element Method (FEM)
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
extruded and rotated 3D geometries. ElmerGrid is independent but fully
supports ElmerSolver and ElmerPost. It may be used to create linear,
quadratic and cubic triangles and rectangles. It has also versatile
capabilities in mesh manipulation.
ElmerGrid may also be used in grid manipulation. ElmerGrid may, for
example, be used to transfer different mesh formats to that understood by
ElmerSolver or ElmerPost. ElmerGrid also includes mesh partitioning
routines that have been optimized for ElmerSolver. The partitioning may be
done by METIS or by a simple geometric division.
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
Elmer is an open-source computational tool for multi-physics problems.
Elmer includes physical models of fluid dynamics, structural mechanics,
electromagnetics and heat transfer. These are described by partial
differential equations which Elmer solves by the Finite Element Method (FEM)
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
xsmc but with a simpler user interface; written with GNU/GTK library and
released under GNU/GPL. Written by Lapo Pieri IK5NAX
WWW: http://www.qsl.net/ik5nax
PR: ports/93224
Submitted by: Diane Bruce <db (at) db.net> - VA3DB
associated set of tools and libraries. MINC was created in 1993 by Peter
Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
Institute. Many others have contributed to the design and implementation
MINC over the years.
PR: ports/91918
Submitted by: Jason W. Bacon <bacon (at) smithers.neuro.mcw.edu>
multi-dimensional data sets. The basic component of CDF is a software
programming interface that is a device independent view of the CDF data
model. The application developer is insulated from the actual physical
file format for reasons of conceptual simplicity, device independence,
and future expandability. CDF files created on any given platform can
be transported to any other platform on to which CDF is ported and used
with any CDF tools or layered applications.
A comparison between CDF, netCDF, HDF and HDF5 is available at
<http://cdf.gsfc.nasa.gov/html/FAQ.html>.
anything from complex fluid flows involving chemical reactions, turbulence and
heat transfer, to solid dynamics, electromagnetics and the pricing of financial
options.
WWW: http://www.opencfd.co.uk/openfoam/index.html
PR: ports/91886
Submitted by: thierry
