Commit graph

10866 commits

Author SHA1 Message Date
Wen Heping
1c8404d28d - Update to 2.12.2
PR:		213338
Submitted by:	dieterich@ogolem.org(maintainer)
2016-10-10 13:03:23 +00:00
TAKATSU Tomonari
229913f9fd - Add new port: math/R-cran-numDeriv
Methods for calculating (usually) accurate numerical first and
  second order derivatives. Accurate calculations are done using
  'Richardson"s' extrapolation or, when applicable, a complex step
  derivative is available. A simple difference method is also provided.
  Simple difference is (usually) less accurate but is much quicker
  than 'Richardson"s' extrapolation and provides a useful cross-check.
  Methods are provided for real scalar and vector valued functions.

  WWW: https://cran.r-project.org/web/packages/numDeriv/
2016-10-10 12:49:50 +00:00
TAKATSU Tomonari
af8ef31346 - Update to 2.1.2 2016-10-10 11:41:41 +00:00
Adam Weinberger
74ad33a2b2 Update to 1.04, sort plist, add NO_ARCH, and remove unnecessary
TEST_DEPENDS.

Changes: https://metacpan.org/changes/distribution/Math-Polygon
2016-10-08 23:04:58 +00:00
Adam Weinberger
e74aef638d Update to 2.13, and add NO_ARCH.
Changes: https://metacpan.org/changes/distribution/Math-MatrixReal
2016-10-08 23:03:08 +00:00
TAKATSU Tomonari
0de5502268 - Update to 0.6-8 2016-10-08 22:34:35 +00:00
Dmitry Marakasov
a6720787dc - Switch to options helpers 2016-10-08 09:01:53 +00:00
Dmitry Marakasov
ba2ea6465d - Fix LICENSE
- Add LICENSE_FILE
- Switch to options helpers
- Cosmetic fixes
- Regenerate patches
2016-10-07 09:01:51 +00:00
Olivier Duchateau
cb69e494aa Update to 1.11.2
Changes: https://github.com/numpy/numpy/blob/v1.11.2/doc/release/1.11.2-notes.rst
2016-10-06 20:31:21 +00:00
Tobias C. Berner
4c5cbea7b9 Update eigen3 to 3.2.10
Changelog: http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.2.10

Reviewed by:    rakuco
Approved by:    rakuco (mentor)
Differential Revision:  https://reviews.freebsd.org/D8149
2016-10-05 06:18:09 +00:00
Jan Beich
3a043572ad math/eigen3: unbreak consumers on 9.x after r421231
In file included from /usr/local/include/eigen3/unsupported/Eigen/MatrixFunctions:58,
                 from modules/contrib/src/rgbdodometry.cpp:65:
/usr/local/include/eigen3/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h: In member function 'void Eigen::MatrixExponential<MatrixType>::computeUV(float)':
/usr/local/include/eigen3/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h:296: error: call of overloaded 'pow(int, int&)' is ambiguous
/usr/include/math.h:210: note: candidates are: double pow(double, double)
/usr/include/c++/4.2/cmath:357: note:                 float std::pow(float, float)
/usr/include/c++/4.2/cmath:361: note:                 long double std::pow(long double, long double)
/usr/include/c++/4.2/cmath:365: note:                 double std::pow(double, int)
/usr/include/c++/4.2/cmath:369: note:                 float std::pow(float, int)
/usr/include/c++/4.2/cmath:373: note:                 long double std::pow(long double, int)

Reported by:	pkg-fallout
2016-10-05 04:28:06 +00:00
Stephen Montgomery-Smith
7553fb2c21 - Add LICENSE.
- Fix portlint errors.
2016-10-05 01:55:59 +00:00
Dmitry Marakasov
a527833ef2 - Add LICENSE
- Switch to options helpers
- Switch to new test framework
- Regenerate patches
2016-10-04 15:15:59 +00:00
Mathieu Arnold
6dc7ebb8f0 Silence check-plist, there is already PORTDOCS=*
Sponsored by:	Absolight
2016-10-04 11:41:45 +00:00
Jan Beich
ba3ffd9b12 graphics/opencv: add suffix to make room for 3.x series
To avoid confusion, the main port is to track the latest release.
Whether to rename includes/libraries as well making it possible to
install 2.x and 3.x side-by-side remains to be investigated.

PR:		210505 (for tracking)
Inspired by:	PkgSrc
2016-10-03 17:47:08 +00:00
Thomas Zander
25b6f83eb5 Allow selection of optimised BLAS implementations via OPTIONs
PR:		213090
Submitted by:	elferdo@gmail.com
2016-10-03 15:57:04 +00:00
Jan Beich
dc9752c0bb math/openfst: unbreak on 9.x
symbol-table-ops.cc: In function 'bool fst::AddAuxiliarySymbols(const string&, int64, int64, fst::SymbolTable*)':
symbol-table-ops.cc:131:43: error: 'to_string' is not a member of 'std'
     if (index != syms->AddSymbol(prefix + std::to_string(i), index)) {
                                           ^
Reported by:	pkg-fallout
Approved by:	portmgr blanket
2016-10-03 06:52:41 +00:00
Stephen Montgomery-Smith
b015aad9ed - Add LICENSE. 2016-10-02 19:59:01 +00:00
Stephen Montgomery-Smith
34580bf8bb - Update to 3.1.1. 2016-10-02 17:49:30 +00:00
Stephen Montgomery-Smith
a29e36a0ca - Update to 2.4.2. 2016-10-02 17:48:51 +00:00
Stephen Montgomery-Smith
8628181ae0 - Update to 1.0.14. 2016-10-02 17:48:15 +00:00
Stephen Montgomery-Smith
8bcd3f9197 - Update to 1.5.2. 2016-10-02 17:47:36 +00:00
Ruslan Makhmatkhanov
edf64b31b4 math/pecl-stats: configure PORTSCOUT
- configure PORTSCOUT
- fix typo on pkg-descr
- small change on COMMENT

PR:		212766
Submitted by:   Danilo G. Baio (dbaio) <dbaio@bsd.com.br> (maintainer)
2016-10-02 12:09:05 +00:00
Antoine Brodin
d6f9c75b9a Deprecate ports broken for more than 6 months 2016-10-01 10:55:40 +00:00
Danilo Egea Gondolfo
f47cbc9eef - Update to 7.400.3 2016-09-30 21:13:04 +00:00
Rene Ladan
a783ff66a0 Remove expired ports:
2016-09-30 math/why3-spark: Only useful for deprecated lang/spark
2016-09-30 lang/spark: Broken for more than 6 months
2016-09-30 math/alt-ergo-spark: Only useful for deprecate lang/spark
2016-09-30 security/nessus-libnasl: Abandoned, consider using OpenVAS
2016-09-30 security/nessus: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-libraries: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-plugins: Abandoned, consider using OpenVAS
2016-09-30 20:31:51 +00:00
Wen Heping
ddcf653a2f Five omnibus tests for testing the composite hypothesis of normality.
WWW: http://cran.r-project.org/web/packages/nortest/

PR:		213089
Submitted by:	pfg@
2016-09-30 07:08:56 +00:00
Wen Heping
9e2ca25ffd Density, distribution function, quantile function, random generation
and expected value function for the truncated normal distribution
with mean equal to 'mean' and standard deviation equal to 'sd'.

WWW: http://cran.r-project.org/web/packages/truncnorm/

PR:		213091
Submitted by:	pfg@
2016-09-30 06:24:27 +00:00
Alex Dupre
a9f8bc813e Comment out PATCH_DEPENDS.
Spotted by:	mat
2016-09-28 08:17:03 +00:00
Alex Dupre
b16370a225 Update to 3.1.5 release. 2016-09-28 08:04:21 +00:00
Antoine Brodin
ea16d28b49 - Update devel/doxygen to 1.8.12
- Adjust plist of ports depending on it

PR:		212869
2016-09-27 16:32:52 +00:00
Wen Heping
96d4434fc5 - Update to 1.2.1 2016-09-26 23:37:37 +00:00
Wen Heping
f6c9c48579 - Update to 3.31.2 2016-09-26 23:25:43 +00:00
Pietro Cerutti
8123a2344e math/mpexpr: update to 1.2 (official) release
The previous version was a RC, despite there was no mention of it in the
distfile. Most patches have been incorporated upstreams.
2016-09-26 18:28:41 +00:00
Tijl Coosemans
48f4591035 - Update devel/icu to 57.1.
- Clean up the Makefile.
- Follow some upstream recommendations (--with-data-packaging=archive,
  --disable-renaming, -DICU_NO_USER_DATA_OVERRIDE).
- Patch makefiles to install static libraries with INSTALL_DATA so they
  aren't stripped.
- Patch config/mh-bsd-gcc to sync with config/mh-linux-gcc.
- Fix endianness detection in ICU.  The code wanted to use BYTE_ORDER
  defined in machine/endian.h, but this isn't visible because ICU is
  compiled with _XOPEN_SOURCE.  Patch the code to use _BYTE_ORDER instead.
- Compile ICU with C++11 compiler to enable move constructors.
- Patch ICU to fix a problem with atomics in the case of a C++11 compiler
  without C++11 header <atomic> (like Clang on FreeBSD 9).
- Bump all ports that depend on it due to library version change.
- Add USES=compiler:c++0x to some ports that pick up -std=c++0x from ICU
  pkgconfig files.
- Add USES=compiler:c++11-lib to graphics/libcdr01 because it also needs
  a C++11 runtime library now.  Add this to all ports that depend on it
  so their executables load the right libstdc++.so on FreeBSD 9.

PR:		205120
Exp-run by:	antoine
Approved by:	portmgr (antoine)
2016-09-24 11:06:57 +00:00
Joseph Mingrone
1cbd3576d5 Update email address to jrm@FreeBSD.org for ports that I maintain
Reviewed by:	mat, swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D7995
2016-09-23 21:42:02 +00:00
Torsten Zuehlsdorff
d9bd705a58 lang/php56: Update from 5.6.25 to 5.6.26
Security:    CVE-2016-7416
Security:    CVE-2016-7412
Security:    CVE-2016-7414
Security:    CVE-2016-7417
Security:    CVE-2016-7411
Security:    CVE-2016-7413
Security:    CVE-2016-7418

MFH:         2016Q3
Approved by: swills (mentor)
2016-09-23 08:26:44 +00:00
Baptiste Daroussin
d4f5c79992 Even if upstream thinks clang does not support openmp we will soon know how to
make it works :)
2016-09-22 15:15:21 +00:00
Dmitry Marakasov
d187f798cc - Update to 1.1.0
PR:		212857
Submitted by:	neel@neelc.org (maintainer)
2016-09-22 14:30:25 +00:00
Torsten Zuehlsdorff
ad86e61f50 lang/php70: Update from 7.0.10 to 7.0.11
Security:    CVE-2016-7416
Security:    CVE-2016-7412
Security:    CVE-2016-7414
Security:    CVE-2016-7417
Security:    CVE-2016-7413
Security:    CVE-2016-7418

MFH:         2016Q3
Approved by: pi (mentor)
2016-09-21 15:43:47 +00:00
Wen Heping
6911378046 - Update to 5.38.1
PR:		212827
Submitted by:	satosi.kimura@nifty.ne.jp
2016-09-21 01:25:11 +00:00
Mark Linimon
bf1d416b93 Mark as broken on sparc64.
Approved by:	portmgr (tier-2 blanket)
2016-09-18 13:53:14 +00:00
Mark Linimon
a39baa64d4 Mark broken on sparc64.
Approved by:	portmgr (tier-2 blanket)
2016-09-18 11:48:46 +00:00
Mark Linimon
7a8763202b Mark broken on sparc64.
Approved by:	portmgr (tier-2 blanket)
2016-09-18 11:32:51 +00:00
TAKATSU Tomonari
4d8d0ba07b - Update to 7.2 2016-09-17 06:48:40 +00:00
Stephen Montgomery-Smith
0c72c0f3cb - Update to 0.1.2. 2016-09-17 01:23:00 +00:00
Dmitry Marakasov
1015f56cf9 - Update to 1.0.5
- Update LICENSE
- Take maintainer'ship

Changelog:

1.0.5
  - Fix bug in stats_stat_binomial_coef which causes segfault in some
    environments
  - Fix bug in stats_stat_factorial which leads infinite loop in some
    cases
  - stats_stat_factorial returns immediately when the value are reached
    to +INF
  - Change supported version to PHP 5.3 or higher

1.0.4
  - Fixed bugs (see tests for details)

PR:		212504
Submitted by:	dbaio@bsd.com.br
2016-09-16 22:38:04 +00:00
Pietro Cerutti
63360cedd4 math/mpexpr: update to 1.2 2016-09-16 07:38:43 +00:00
David Naylor
a1626bcdb5 math/R-cran-stabledist: updated to version 0.7-1
- add new test dependencies:
   - devel/R-cran-RUnit
   - finance/R-cran-fBasics
   - math/R-cran-Rmpfr

Generated by:	portcran (0.1.2)
2016-09-15 19:53:01 +00:00
Steve Wills
149ba7338a Unmark broken on powerpc64
These ports built successfully
2016-09-15 01:41:28 +00:00