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6 commits

Author SHA1 Message Date
Luca Pizzamiglio
ecaa1024a6 biology/htslib biology/bcftools biology/samtools: Update to 1.6 
PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
 2017-10-25 10:19:50 +00:00
Kurt Jaeger
04b3bb054f biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 
Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
 2016-05-26 20:28:55 +00:00
Jason Unovitch
d5dffd3623 biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
 2015-12-25 01:31:09 +00:00
Mathieu Arnold
c6457ffef4 Update ports in the [bcd]* categories to not use GH_COMMIT. 
With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
 2015-05-06 15:16:53 +00:00
Bartek Rutkowski
9b9d6e55f6 biology/samtools: update 1.1 -> 1.2 
PR:		198292
Submitted by:	Reed Cartwright <cartwright@asu.edu>
 2015-03-06 12:53:58 +00:00
Pawel Pekala
dc1d64b572 Samtools implements various utilities for post-processing alignments in the 
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

WWW: http://www.htslib.org/

PR:		195592
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>
 2014-12-15 21:59:19 +00:00